Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0010001

Physical Location & Seq

Genomic Coordinates Reverse (-)

6576065 .. 6578291

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG075300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAACTATGTCTTCTGCTGAATGTGATTGATCCCAAGATTGGTGGTGTCATGATCATGGGTGATAGGGGAACCGGGAAATCCACAACTGTTAGGTCTTTGACTGATTTGCTTCCCGAAATTAAGATTGTTGCTGGTGATCCCTACAATTCGGACCCAGAAGATCCAGAGGCCATGGGCCCGGAAGTGAGAGAGAGCATTGTGAAAGGAGTGCAACTTCCTGTGGCGACCACTAAGATCAACATGGTTGATTTACCTTTGGGTGCTACGGAAGATAGAGTGTGTGGGACAATCGACATTGAGAAAGCTCTGACTGAGGGTGTCAAGGCATTTGAGCCGGGACTTCTTGCAAAAGCTAATAGAGGCATTCTTTATGTGGATGAAGTTAATCTTTTGGATGATCATTTAGTGGATGTTCTATTGGATTCTGCTGCCTCTGGATGGAACACAGTGGAGAGGGAGGGTATTTCGATTTCTCATCCTGCAAGGTTCATTTTGATTGGCTCTGGCAATCCAGAAGAAGGGGAGCTCAGGCCGCAGTTGCTTGACCGTTTTGGTATGCATGCTCAAGTTGGGACTGTGAGGGATGCAGAACTGAGAGTGAAGATTGTGGAGGAGAGAGCTCGGTTTGACAAAAACCCAAAAGATTTTCGGGTTTCTTACGAAGCTGAGCAAGATAAGCTTCAGGAACAAATTACCTCAGCTAGAAGTGGTCTTCCATCTGTACAGATTGACCAGGATCTCAAGGTGAAAATCTCCCGGGTTTGTTCAGAGTTGAATGTCGACGGATTGAGAGGAGACATAGTGACTAACAGGGCTGCAAAAGCTTTGGCTGCTCTAAAGGGAAGGGATAAGGTGACTCCAGAAGATATTGCTACTGTCATCCCTAACTGCTTAAGACATCGTCTTCGGAAGGATCCTTTAGAGTCGATTGACTCTGGTTTACTTGTCATTGAGAAATTTTACGAGATCTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010007 GO:0010033 GO:0015994 GO:0015995 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016851 GO:0016874 GO:0016887 GO:0017111 GO:0018130 GO:0019438 GO:0030312 GO:0032991 GO:0033013 GO:0033014 GO:0034641 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046148 GO:0046483 GO:0050896 GO:0051002 GO:0051003 GO:0051186 GO:0051188 GO:0071704 GO:0071944 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Mg_chelatase

Protein Analysis

326

Amino Acids

35.77

Weight (kDa)

5.07

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_22	PF13401	17 - 168	6.5e-06	AAA domain
Mg_chelatase	PF01078	102 - 172	1.9e-07	Magnesium chelatase, subunit ChlI
AAA_lid_2	PF17863	252 - 310	3.4e-20	AAA lid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010001)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18480 AT5G45930
fragaria_vesca	FvH4_3g08130 FvH4_3g08130 FvH4_3g08130
malus_domestica	MD05G1304900.v1.1 MD10G1284000.v1.1
prunus_persica	Prupe.4G057500_v2.0.a1
pyrus_communis	pycom05g28220 pycom10g23690
rosa_chinensis	RchiOBHm_Chr5g0010061
rosa_laevigata	RLG00000031723
rosa_multiflora	Rmu_sc0002275.1_g000009 Rmu_sc0016197.1_g000002
rosa_roxburghii	Rroxscaffold_1G00066110
rosa_rugosa	Rorug04G0448900
rosa_samantha	Rh5AG079800 Rh5BG074600 Rh5CG087200 Rh5DG075300
rosa_wichuraiana	Rw5G007390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	783
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	2 cut(s)	668, 958
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
AflII	CTTAAG	1 cut(s)	895
AgsI	TTSAA	1 cut(s)	778
AjnI	CCWGG	1 cut(s)	735
AluBI	AGCT	9 cut(s)	308, 356, 529, 623, 668, 682, 704, 827, 978
AluI	AGCT	9 cut(s)	308, 356, 529, 623, 668, 682, 704, 827, 978
Alw21I	GWGCWC	2 cut(s)	531, 625
Alw26I	GTCTC	1 cut(s)	792
AlwI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
Ama87I	CYCGRG	1 cut(s)	759
AoxI	GGCC	3 cut(s)	171, 178, 533
ApaI	GGGCCC	1 cut(s)	182
ApeKI	GCWGC	3 cut(s)	431, 818, 833
ApoI	RAATTY	1 cut(s)	959
ArsI	GACNNNNNNTTYG	2 cut(s)	891, 923
AspS9I	GGNCC	3 cut(s)	154, 178, 179
AsuC2I	CCSGG	5 cut(s)	76, 182, 339, 760, 761
AsuHPI	GGTGA	4 cut(s)	74, 149, 760, 868
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	1 cut(s)	154
BaeGI	GKGCMC	1 cut(s)	182
BamHI	GGATCC	1 cut(s)	916
BanII	GRGCYC	3 cut(s)	182, 531, 625
BbsI	GAAGAC	3 cut(s)	5, 707, 899
Bbv12I	GWGCWC	2 cut(s)	531, 625
BbvCI	CCTCAGC	1 cut(s)	700
BbvI	GCAGC	3 cut(s)	418, 805, 820
BccI	CCATC	2 cut(s)	435, 727
BciT130I	CCWGG	1 cut(s)	737
BclI	TGATCA	2 cut(s)	54, 400
BcnI	CCSGG	5 cut(s)	76, 182, 339, 760, 761
BcoDI	GTCTC	1 cut(s)	792
BfaI	CTAG	1 cut(s)	705
BfrI	CTTAAG	1 cut(s)	895
BglII	AGATCT	1 cut(s)	969
BisI	GCNGC	4 cut(s)	432, 536, 819, 834
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	4 cut(s)	433, 537, 820, 835
Bme1390I	CCNGG	6 cut(s)	76, 182, 339, 737, 760, 761
Bme18I	GGWCC	1 cut(s)	154
BmeT110I	CYCGRG	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	154, 178, 179
BmiI	GGNNCC	4 cut(s)	73, 156, 180, 918
BmrFI	CCNGG	6 cut(s)	76, 182, 339, 737, 760, 761
BmsI	GCATC	1 cut(s)	577
BpiI	GAAGAC	3 cut(s)	5, 707, 899
BpmI	CTGGAG	1 cut(s)	846
Bpu10I	CCTNAGC	2 cut(s)	530, 700
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	552, 728
BpuMI	CCSGG	5 cut(s)	76, 182, 339, 760, 761
BsaJI	CCNNGG	2 cut(s)	174, 759
BsaXI	ACNNNNNCTCC	2 cut(s)	789, 819
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BseBI	CCWGG	1 cut(s)	737
BseDI	CCNNGG	2 cut(s)	174, 759
BseGI	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BseLI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BseMII	CTCAG	5 cut(s)	306, 544, 587, 660, 714
BseRI	GAGGAG	2 cut(s)	629, 810
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	3 cut(s)	418, 805, 820
BshFI	GGCC	3 cut(s)	173, 180, 535
BsiHKAI	GWGCWC	2 cut(s)	531, 625
BsiHKCI	CYCGRG	1 cut(s)	759
BsiSI	CCGG	4 cut(s)	75, 182, 338, 760
BslFI	GGGAC	3 cut(s)	301, 354, 589
BslI	CCNNNNNNNGG	3 cut(s)	41, 441, 521
BsmAI	GTCTC	1 cut(s)	792
BsmFI	GGGAC	3 cut(s)	301, 354, 589
BsmI	GAATGC	1 cut(s)	366
BsnI	GGCC	3 cut(s)	173, 180, 535
BsoBI	CYCGRG	1 cut(s)	759
Bsp120I	GGGCCC	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	182, 531, 625
Bsp1407I	TGTACA	1 cut(s)	724
Bsp143I	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Bsp1720I	GCTNAGC	1 cut(s)	669
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	3 cut(s)	173, 180, 535
BspCNI	CTCAG	5 cut(s)	307, 543, 588, 661, 713
BspHI	TCATGA	1 cut(s)	51
BspLI	GGNNCC	4 cut(s)	73, 156, 180, 918
BspPI	GGATC	6 cut(s)	26, 134, 158, 747, 911, 924
BspTI	CTTAAG	1 cut(s)	895
BsrGI	TGTACA	1 cut(s)	724
BssECI	CCNNGG	2 cut(s)	174, 759
BssMI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
BssT1I	CCWWGG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	737
Bst4CI	ACNGT	5 cut(s)	91, 451, 551, 580, 880
BstAFI	CTTAAG	1 cut(s)	895
BstAUI	TGTACA	1 cut(s)	724
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BstKTI	GATC	9 cut(s)	34, 57, 142, 166, 240, 403, 742, 919, 972
BstMAI	GTCTC	1 cut(s)	792
BstMBI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
BstMWI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
BstNI	CCWGG	1 cut(s)	737
BstNSI	RCATGY	1 cut(s)	566
BstSCI	CCNGG	6 cut(s)	74, 180, 337, 735, 758, 759
BstSLI	GKGCMC	1 cut(s)	182
BstV1I	GCAGC	3 cut(s)	418, 805, 820
BstV2I	GAAGAC	3 cut(s)	5, 707, 899
BstX2I	RGATCY	4 cut(s)	163, 739, 916, 969
BstYI	RGATCY	4 cut(s)	163, 739, 916, 969
BsuRI	GGCC	3 cut(s)	173, 180, 535
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	7 cut(s)	385, 403, 418, 446, 478, 592, 882
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	564
CciI	TCATGA	1 cut(s)	51
Cfr13I	GGNCC	3 cut(s)	154, 178, 179
Cfr9I	CCCGGG	1 cut(s)	759
Csp6I	GTAC	1 cut(s)	725
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	5 cut(s)	52, 58, 175, 244, 563
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
DpnI	GATC	9 cut(s)	33, 56, 141, 165, 239, 402, 741, 918, 971
DpnII	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Ecl136II	GAGCTC	2 cut(s)	529, 623
Eco130I	CCWWGG	1 cut(s)	174
Eco24I	GRGCYC	3 cut(s)	182, 531, 625
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	2 cut(s)	529, 623
Eco57I	CTGAAG	2 cut(s)	668, 958
Eco88I	CYCGRG	1 cut(s)	759
EcoICRI	GAGCTC	2 cut(s)	529, 623
EcoRII	CCWGG	1 cut(s)	735
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	564
EcoT38I	GRGCYC	3 cut(s)	182, 531, 625
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	5 cut(s)	55, 61, 178, 247, 566
FaiI	YATR	9 cut(s)	10, 53, 59, 176, 245, 375, 560, 564, 803
FalI	AAGNNNNNCTT	4 cut(s)	375, 407, 666, 698
FaqI	GGGAC	3 cut(s)	301, 354, 589
FatI	CATG	5 cut(s)	51, 57, 174, 243, 562
FbaI	TGATCA	2 cut(s)	54, 400
FblI	GTMKAC	1 cut(s)	783
Fnu4HI	GCNGC	4 cut(s)	432, 536, 819, 834
FokI	GGATG	7 cut(s)	392, 410, 425, 453, 465, 599, 869
FriOI	GRGCYC	3 cut(s)	182, 531, 625
Fsp4HI	GCNGC	4 cut(s)	432, 536, 819, 834
FspBI	CTAG	1 cut(s)	705
GluI	GCNGC	4 cut(s)	432, 536, 819, 834
GsuI	CTGGAG	1 cut(s)	846
HaeIII	GGCC	3 cut(s)	173, 180, 535
HapII	CCGG	4 cut(s)	75, 182, 338, 760
Hin1II	CATG	5 cut(s)	55, 61, 178, 247, 566
HincII	GTYRAC	1 cut(s)	784
HindII	GTYRAC	1 cut(s)	784
HindIII	AAGCTT	2 cut(s)	680, 825
HinfI	GANTC	4 cut(s)	425, 859, 926, 935
HpaII	CCGG	4 cut(s)	75, 182, 338, 760
HphI	GGTGA	4 cut(s)	74, 149, 760, 868
Hpy166II	GTNNAC	2 cut(s)	784, 944
Hpy188I	TCNGA	4 cut(s)	154, 312, 772, 912
Hpy188III	TCNNGA	7 cut(s)	52, 116, 167, 438, 515, 686, 863
Hpy8I	GTNNAC	2 cut(s)	784, 944
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	515, 840, 907
HpyCH4III	ACNGT	5 cut(s)	91, 451, 551, 580, 880
HpyCH4V	TGCA	6 cut(s)	214, 350, 485, 562, 590, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
HpyF3I	CTNAG	6 cut(s)	234, 315, 530, 596, 669, 700
Hsp92II	CATG	5 cut(s)	55, 61, 178, 247, 566
Ksp22I	TGATCA	2 cut(s)	54, 400
Kzo9I	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	3 cut(s)	418, 805, 820
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	705
MaeIII	GTNAC	2 cut(s)	805, 856
MalI	GATC	9 cut(s)	33, 56, 141, 165, 239, 402, 741, 918, 971
MboI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
MboII	GAAGA	9 cut(s)	5, 173, 284, 530, 616, 707, 878, 899, 964
MflI	RGATCY	4 cut(s)	163, 739, 916, 969
MhlI	GDGCHC	3 cut(s)	182, 531, 625
MluCI	AATT	4 cut(s)	120, 148, 693, 959
MlyI	GAGTC	3 cut(s)	853, 929, 935
Mph1103I	ATGCAT	1 cut(s)	564
MseI	TTAA	3 cut(s)	123, 387, 896
MslI	CAYNNNNRTG	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	978
MspCI	CTTAAG	1 cut(s)	895
MspI	CCGG	4 cut(s)	75, 182, 338, 760
MspR9I	CCNGG	6 cut(s)	76, 182, 339, 737, 760, 761
Mva1269I	GAATGC	1 cut(s)	366
MvaI	CCWGG	1 cut(s)	737
MwoI	GCNNNNNNNGC	5 cut(s)	535, 541, 679, 824, 833
NciI	CCSGG	5 cut(s)	76, 182, 339, 760, 761
NcoI	CCATGG	1 cut(s)	174
NdeII	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
NlaIII	CATG	5 cut(s)	55, 61, 178, 247, 566
NlaIV	GGNNCC	4 cut(s)	73, 156, 180, 918
NmuCI	GTSAC	2 cut(s)	805, 856
NsiI	ATGCAT	1 cut(s)	564
NspI	RCATGY	1 cut(s)	566
PaeI	GCATGC	1 cut(s)	566
PagI	TCATGA	1 cut(s)	51
PctI	GAATGC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	425
PflFI	GACNNNGTC	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	433, 537, 820, 835
PleI	GAGTC	3 cut(s)	853, 929, 934
PpsI	GAGTC	3 cut(s)	853, 929, 934
Psp124BI	GAGCTC	2 cut(s)	531, 625
Psp6I	CCWGG	1 cut(s)	735
PspGI	CCWGG	1 cut(s)	735
PspN4I	GGNNCC	4 cut(s)	73, 156, 180, 918
PspOMI	GGGCCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	154, 178, 179
PsuI	RGATCY	4 cut(s)	163, 739, 916, 969
PsyI	GACNNNGTC	1 cut(s)	903
PvuII	CAGCTG	1 cut(s)	978
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	2 cut(s)	531, 625
SalI	GTCGAC	1 cut(s)	782
SaqAI	TTAA	3 cut(s)	123, 387, 896
SatI	GCNGC	4 cut(s)	432, 536, 819, 834
Sau3AI	GATC	9 cut(s)	31, 54, 139, 163, 237, 400, 739, 916, 969
Sau96I	GGNCC	3 cut(s)	154, 178, 179
SchI	GAGTC	3 cut(s)	853, 929, 935
ScrFI	CCNGG	6 cut(s)	76, 182, 339, 737, 760, 761
SduI	GDGCHC	3 cut(s)	182, 531, 625
SfaNI	GCATC	1 cut(s)	577
SinI	GGWCC	1 cut(s)	154
SmaI	CCCGGG	1 cut(s)	761
SmiMI	CAYNNNNRTG	1 cut(s)	56
SmlI	CTYRAG	3 cut(s)	567, 743, 895
SmoI	CTYRAG	3 cut(s)	567, 743, 895
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	4 cut(s)	120, 148, 693, 959
SsiI	CCGC	1 cut(s)	536
SspMI	CTAG	1 cut(s)	705
SstI	GAGCTC	2 cut(s)	531, 625
StyD4I	CCNGG	6 cut(s)	74, 180, 337, 735, 758, 759
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	5 cut(s)	91, 451, 551, 580, 880
TaqI	TCGA	4 cut(s)	294, 470, 783, 929
TasI	AATT	4 cut(s)	120, 148, 693, 959
TatI	WGTACW	1 cut(s)	724
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	3 cut(s)	123, 387, 896
Tru9I	TTAA	3 cut(s)	123, 387, 896
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	2 cut(s)	805, 856
TseI	GCWGC	3 cut(s)	431, 818, 833
Tsp45I	GTSAC	2 cut(s)	805, 856
TspDTI	ATGAA	3 cut(s)	17, 396, 481
TspGWI	ACGGA	2 cut(s)	284, 801
TspMI	CCCGGG	1 cut(s)	759
TspRI	CASTG	1 cut(s)	456
Tth111I	GACNNNGTC	1 cut(s)	903
Vha464I	CTTAAG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	959
XceI	RCATGY	1 cut(s)	566
XmaI	CCCGGG	1 cut(s)	759
XmiI	GTMKAC	1 cut(s)	783
XspI	CTAG	1 cut(s)	705
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.