pycom05g28220

Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg- protoporphyrin IX

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
29022068 .. 29023809
1742 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g28220.3

Sequence Viewer

Length: 1266 bp
ATGGCGTCCGTACTCGGAAGTTGCTCGACAGCGGCAACTTTGGCCCCTCGACATCTCTCATCTCGCGCTTCCAGGACTTCAATTCCCTCTCTCTCCATATGCCCAGGGAAGAGTTTTGGGAGGAAGTTTTATGGAGGGATTGGGATTCATGGAAAGAAAAGGTCTCAATTCCATGTGACCAATGTTGCTACTGAAATCAGCCCTTCTGAGCAGGCGCAGAGGGTAGCTGCTAAGGAAAACCAGAGGCCAGTATATCCATTTGCTGCTATTGTAGGACAAGATGAGATGAAACTGTGTCTTCTGCTGAATGTGATTGATCCCAAGATTGGTGGTGTCATGATCATGGGAGATAGGGGAACTGGAAAATCCACAACCGTTAGGTCTTTGGTCGATTTGCTTCCTGAAATTAAGGTAGTTTCTGGTGACCCTTACAACTCAGACCCAGAAGATCCGGAGTCCATGGGCGCGGAAGTTAGAGAGAGCATTGTGAAGGGGGAGCAGCTTCCTGTTATCAAGACTAAGATCAACATGGTTGATTTACCCTTGGGTGCTACAGAAGATAGAGTCTGCGGGACAATTGACATTGAGAAAGCTCTCACTGAGGGGGTCAAGGCATTTGAGCCTGGCCTTCTTGCAAAAGCTAATAGAGGAATTCTGTATGTGGACGAAGTTAATCTTTTGGATGATCATTTAGTGGATGTTTTATTGGATTCTGCTGCATCGGGATGGAACACGGTGGAGAGAGAGGGTATTTCAATTTCACATCCTGCCCGGTTTATTTTGATTGGCTCGGGCAATCCAGAAGAAGGAGAGCTCAGGCCACAGTTGCTTGACCGTTTTGGAATGCACGCACAGGTTGGGACTGTGAGGGATGCAGAGCTAAGAGTGAAGATTGTGGAGGAGAGGGCTCGGTTTGACAAAAACCCTAAAGAATTTCGGGTTTCTTACGAAGCTGAGCAAGAAAAGCTTCAGGAACAAATCGGCTCAGCTAGAAGTTATCTTCCATCTGTTCAGATTGATCAGGACCTCAAGGTGAAAATCTCCAAGGTTTGCGCAGAGTTGAATGTCGATGGATTGAGAGGAGACATAGTGACTAACAGAGCTGCAAAAGCCTTGGCTGCTCTGAAGGGAAGTGATAAGGTGTCTCCAGAGGATATTGCCACTGTCATCCCTAACTGCTTAAGACATCGTCTTCGGAAGGATCCTTTAGAGTCGATCGACTCCGGTTTACTTGTCATGGAGAAGTTCTACGAGGTGTTTAGCTGA

Protein Analysis

422

Amino Acids

45.91

Weight (kDa)

5.93

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1054
AccII CGCG 2 cut(s) 66, 467
AccIII TCCGGA 1 cut(s) 451
AciI CCGC 3 cut(s) 32, 467, 570
AclWI GGATC 4 cut(s) 311, 443, 1196, 1209
AcsI RAATTY 2 cut(s) 651, 932
AcuI CTGAAG 2 cut(s) 953, 1145
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 12
AfiI CCNNNNNNNGG 2 cut(s) 326, 806
AflII CTTAAG 1 cut(s) 1180
AgsI TTSAA 3 cut(s) 81, 756, 1063
AjnI CCWGG 3 cut(s) 71, 103, 622
Alw21I GWGCWC 1 cut(s) 816
Alw26I GTCTC 3 cut(s) 168, 1077, 1149
AlwI GGATC 4 cut(s) 311, 443, 1196, 1209
Ama87I CYCGRG 1 cut(s) 790
Aor13HI TCCGGA 1 cut(s) 451
AoxI GGCC 4 cut(s) 42, 245, 625, 818
ApeKI GCWGC 6 cut(s) 227, 263, 499, 716, 1103, 1118
ApoI RAATTY 2 cut(s) 651, 932
ArsI GACNNNNNNTTYG 2 cut(s) 1176, 1208
Asp700I GAANNNNTTC 1 cut(s) 966
AspLEI GCGC 4 cut(s) 68, 217, 467, 1055
AspS9I GGNCC 2 cut(s) 43, 1024
AsuC2I CCSGG 1 cut(s) 772
AsuHPI GGTGA 2 cut(s) 434, 1045
AvaI CYCGRG 1 cut(s) 790
AvaII GGWCC 1 cut(s) 1024
BamHI GGATCC 1 cut(s) 1201
BanII GRGCYC 2 cut(s) 816, 910
BbsI GAAGAC 2 cut(s) 290, 1184
Bbv12I GWGCWC 1 cut(s) 816
BbvI GCAGC 6 cut(s) 214, 250, 511, 703, 1090, 1105
BccI CCATC 3 cut(s) 720, 1012, 1064
BciT130I CCWGG 3 cut(s) 73, 105, 624
BclI TGATCA 3 cut(s) 339, 685, 1018
BcnI CCSGG 1 cut(s) 772
BcoDI GTCTC 3 cut(s) 168, 1077, 1149
BfaI CTAG 1 cut(s) 990
BfmI CTRYAG 1 cut(s) 552
BfrI CTTAAG 1 cut(s) 1180
BisI GCNGC 7 cut(s) 33, 228, 264, 500, 717, 1104, 1119
BlpI GCTNAGC 2 cut(s) 954, 985
BlsI GCNGC 7 cut(s) 34, 229, 265, 501, 718, 1105, 1120
Bme1390I CCNGG 4 cut(s) 73, 105, 624, 772
Bme18I GGWCC 1 cut(s) 1024
BmeT110I CYCGRG 1 cut(s) 790
BmgT120I GGNCC 2 cut(s) 43, 1024
BmiI GGNNCC 2 cut(s) 45, 1203
BmrFI CCNGG 4 cut(s) 73, 105, 624, 772
BmsI GCATC 2 cut(s) 728, 862
BpiI GAAGAC 2 cut(s) 290, 1184
BpmI CTGGAG 1 cut(s) 1131
Bpu10I CCTNAGC 2 cut(s) 231, 815
Bpu1102I GCTNAGC 2 cut(s) 954, 985
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 1 cut(s) 772
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 6 cut(s) 103, 104, 459, 543, 1044, 1113
BsaWI WCCGGW 2 cut(s) 451, 1223
BsaXI ACNNNNNCTCC 2 cut(s) 1074, 1104
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 806
Bse1I ACTGG 2 cut(s) 248, 364
BseAI TCCGGA 1 cut(s) 451
BseBI CCWGG 3 cut(s) 73, 105, 624
BseDI CCNNGG 6 cut(s) 103, 104, 459, 543, 1044, 1113
BseGI GGATG 6 cut(s) 688, 703, 731, 763, 877, 1167
BseLI CCNNNNNNNGG 2 cut(s) 326, 806
BseMII CTCAG 6 cut(s) 198, 450, 591, 829, 945, 999
BseNI ACTGG 2 cut(s) 248, 364
BseRI GAGGAG 2 cut(s) 914, 1095
BseXI GCAGC 6 cut(s) 214, 250, 511, 703, 1090, 1105
Bsh1236I CGCG 2 cut(s) 66, 467
Bsh1285I CGRYCG 1 cut(s) 1218
BshFI GGCC 4 cut(s) 44, 247, 627, 820
BsiEI CGRYCG 1 cut(s) 1218
BsiHKAI GWGCWC 1 cut(s) 816
BsiHKCI CYCGRG 1 cut(s) 790
BsiSI CCGG 3 cut(s) 452, 772, 1224
BslFI GGGAC 2 cut(s) 586, 874
BslI CCNNNNNNNGG 2 cut(s) 326, 806
BsmAI GTCTC 3 cut(s) 168, 1077, 1149
BsmFI GGGAC 2 cut(s) 586, 874
BsmI GAATGC 1 cut(s) 849
BsnI GGCC 4 cut(s) 44, 247, 627, 820
Bso31I GGTCTC 1 cut(s) 168
BsoBI CYCGRG 1 cut(s) 790
Bsp1286I GDGCHC 2 cut(s) 816, 910
Bsp13I TCCGGA 1 cut(s) 451
Bsp143I GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
Bsp1720I GCTNAGC 2 cut(s) 954, 985
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 3 cut(s) 32, 467, 570
BspANI GGCC 4 cut(s) 44, 247, 627, 820
BspCNI CTCAG 6 cut(s) 199, 449, 592, 828, 946, 998
BspEI TCCGGA 1 cut(s) 451
BspFNI CGCG 2 cut(s) 66, 467
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 45, 1203
BspPI GGATC 4 cut(s) 311, 443, 1196, 1209
BspTI CTTAAG 1 cut(s) 1180
BspTNI GGTCTC 1 cut(s) 168
BsrI ACTGG 2 cut(s) 248, 364
BssECI CCNNGG 6 cut(s) 103, 104, 459, 543, 1044, 1113
BssMI GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 4 cut(s) 459, 543, 1044, 1113
Bst2UI CCWGG 3 cut(s) 73, 105, 624
Bst4CI ACNGT 7 cut(s) 294, 376, 736, 825, 836, 865, 1165
Bst6I CTCTTC 1 cut(s) 104
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 1180
BstC8I GCNNGC 2 cut(s) 213, 849
BstDEI CTNAG 9 cut(s) 207, 231, 436, 519, 600, 815, 881, 954, 985
BstDSI CCRYGG 1 cut(s) 459
BstEII GGTNACC 1 cut(s) 422
BstF5I GGATG 6 cut(s) 688, 703, 731, 763, 877, 1167
BstFNI CGCG 2 cut(s) 66, 467
BstHHI GCGC 4 cut(s) 68, 217, 467, 1055
BstKTI GATC 8 cut(s) 319, 342, 451, 525, 688, 1021, 1204, 1218
BstMAI GTCTC 3 cut(s) 168, 1077, 1149
BstMBI GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
BstMCI CGRYCG 1 cut(s) 1218
BstMWI GCNNNNNNNGC 5 cut(s) 41, 826, 964, 1109, 1118
BstNI CCWGG 3 cut(s) 73, 105, 624
BstPI GGTNACC 1 cut(s) 422
BstSCI CCNGG 4 cut(s) 71, 103, 622, 770
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 2 cut(s) 66, 467
BstV1I GCAGC 6 cut(s) 214, 250, 511, 703, 1090, 1105
BstV2I GAAGAC 2 cut(s) 290, 1184
BstX2I RGATCY 2 cut(s) 448, 1201
BstYI RGATCY 2 cut(s) 448, 1201
BsuRI GGCC 4 cut(s) 44, 247, 627, 820
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 6 cut(s) 688, 703, 731, 763, 877, 1167
BtsIMutI CAGTG 2 cut(s) 597, 1161
Cac8I GCNNGC 2 cut(s) 213, 849
CciI TCATGA 1 cut(s) 336
CfoI GCGC 4 cut(s) 68, 217, 467, 1055
Cfr13I GGNCC 2 cut(s) 43, 1024
Csp6I GTAC 1 cut(s) 11
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 7 cut(s) 149, 173, 337, 343, 460, 529, 1237
CviQI GTAC 1 cut(s) 11
DdeI CTNAG 9 cut(s) 207, 231, 436, 519, 600, 815, 881, 954, 985
DpnI GATC 8 cut(s) 318, 341, 450, 524, 687, 1020, 1203, 1217
DpnII GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
Ecl136II GAGCTC 1 cut(s) 814
Eco130I CCWWGG 4 cut(s) 459, 543, 1044, 1113
Eco24I GRGCYC 2 cut(s) 816, 910
Eco31I GGTCTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 1024
Eco53kI GAGCTC 1 cut(s) 814
Eco57I CTGAAG 2 cut(s) 953, 1145
Eco88I CYCGRG 1 cut(s) 790
Eco91I GGTNACC 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 814
EcoO109I RGGNCCY 1 cut(s) 1024
EcoO65I GGTNACC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 651
EcoRII CCWGG 3 cut(s) 71, 103, 622
EcoT14I CCWWGG 4 cut(s) 459, 543, 1044, 1113
EcoT38I GRGCYC 2 cut(s) 816, 910
ErhI CCWWGG 4 cut(s) 459, 543, 1044, 1113
FaeI CATG 7 cut(s) 152, 176, 340, 346, 463, 532, 1240
FalI AAGNNNNNCTT 4 cut(s) 660, 692, 951, 983
FaqI GGGAC 2 cut(s) 586, 874
FatI CATG 7 cut(s) 148, 172, 336, 342, 459, 528, 1236
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 98
FbaI TGATCA 3 cut(s) 339, 685, 1018
Fnu4HI GCNGC 7 cut(s) 33, 228, 264, 500, 717, 1104, 1119
FokI GGATG 6 cut(s) 695, 710, 738, 750, 884, 1154
FriOI GRGCYC 2 cut(s) 816, 910
Fsp4HI GCNGC 7 cut(s) 33, 228, 264, 500, 717, 1104, 1119
FspBI CTAG 1 cut(s) 990
FspI TGCGCA 1 cut(s) 1054
GlaI GCGC 4 cut(s) 67, 216, 466, 1054
GluI GCNGC 7 cut(s) 33, 228, 264, 500, 717, 1104, 1119
GsuI CTGGAG 1 cut(s) 1131
HaeIII GGCC 4 cut(s) 44, 247, 627, 820
HapII CCGG 3 cut(s) 452, 772, 1224
HhaI GCGC 4 cut(s) 68, 217, 467, 1055
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 7 cut(s) 152, 176, 340, 346, 463, 532, 1240
Hin6I GCGC 4 cut(s) 66, 215, 465, 1053
HinP1I GCGC 4 cut(s) 66, 215, 465, 1053
HindIII AAGCTT 1 cut(s) 965
HinfI GANTC 6 cut(s) 145, 455, 564, 710, 1211, 1220
HpaII CCGG 3 cut(s) 452, 772, 1224
HphI GGTGA 2 cut(s) 434, 1045
Hpy166II GTNNAC 2 cut(s) 664, 1229
Hpy188I TCNGA 6 cut(s) 17, 208, 439, 1014, 1125, 1197
Hpy188III TCNNGA 9 cut(s) 337, 401, 452, 514, 723, 800, 971, 1022, 1148
Hpy8I GTNNAC 2 cut(s) 664, 1229
HpyAV CCTTC 6 cut(s) 213, 484, 638, 800, 1120, 1192
HpyCH4III ACNGT 7 cut(s) 294, 376, 736, 825, 836, 865, 1165
HpyCH4V TGCA 5 cut(s) 635, 719, 847, 875, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 826, 964, 1109, 1118
HpyF3I CTNAG 9 cut(s) 207, 231, 436, 519, 600, 815, 881, 954, 985
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 7 cut(s) 152, 176, 340, 346, 463, 532, 1240
HspAI GCGC 4 cut(s) 66, 215, 465, 1053
Kpn2I TCCGGA 1 cut(s) 451
Ksp22I TGATCA 3 cut(s) 339, 685, 1018
Kzo9I GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 6 cut(s) 214, 250, 511, 703, 1090, 1105
LweI GCATC 2 cut(s) 728, 862
MaeI CTAG 1 cut(s) 990
MaeIII GTNAC 3 cut(s) 175, 422, 1090
MalI GATC 8 cut(s) 318, 341, 450, 524, 687, 1020, 1203, 1217
MboI GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
MboII GAAGA 8 cut(s) 121, 290, 458, 569, 815, 901, 992, 1184
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 2 cut(s) 448, 1201
MhlI GDGCHC 2 cut(s) 816, 910
MluCI AATT 7 cut(s) 81, 167, 405, 576, 651, 756, 932
MlyI GAGTC 4 cut(s) 464, 573, 1214, 1220
MroI TCCGGA 1 cut(s) 451
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 3 cut(s) 408, 672, 1181
MslI CAYNNNNRTG 2 cut(s) 341, 724
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 1180
MspI CCGG 3 cut(s) 452, 772, 1224
MspR9I CCNGG 4 cut(s) 73, 105, 624, 772
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 849
MvaI CCWGG 3 cut(s) 73, 105, 624
MvnI CGCG 2 cut(s) 66, 467
MwoI GCNNNNNNNGC 5 cut(s) 41, 826, 964, 1109, 1118
NciI CCSGG 1 cut(s) 772
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 98
NdeII GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
NlaIII CATG 7 cut(s) 152, 176, 340, 346, 463, 532, 1240
NlaIV GGNNCC 2 cut(s) 45, 1203
NmuCI GTSAC 3 cut(s) 175, 422, 1090
NsbI TGCGCA 1 cut(s) 1054
PagI TCATGA 1 cut(s) 336
PasI CCCWGGG 1 cut(s) 104
PctI GAATGC 1 cut(s) 849
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 2 cut(s) 145, 710
PflFI GACNNNGTC 1 cut(s) 1188
PfoI TCCNGGA 1 cut(s) 71
PkrI GCNGC 7 cut(s) 34, 229, 265, 501, 718, 1105, 1120
Ple19I CGATCG 1 cut(s) 1218
PleI GAGTC 4 cut(s) 463, 572, 1214, 1219
PpsI GAGTC 4 cut(s) 463, 572, 1214, 1219
PpuMI RGGWCCY 1 cut(s) 1024
Psp124BI GAGCTC 1 cut(s) 816
Psp5II RGGWCCY 1 cut(s) 1024
Psp6I CCWGG 3 cut(s) 71, 103, 622
PspEI GGTNACC 1 cut(s) 422
PspGI CCWGG 3 cut(s) 71, 103, 622
PspN4I GGNNCC 2 cut(s) 45, 1203
PspPI GGNCC 2 cut(s) 43, 1024
PspPPI RGGWCCY 1 cut(s) 1024
PsuI RGATCY 2 cut(s) 448, 1201
PsyI GACNNNGTC 1 cut(s) 1188
PvuI CGATCG 1 cut(s) 1218
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 2 cut(s) 341, 724
SacI GAGCTC 1 cut(s) 816
SaqAI TTAA 3 cut(s) 408, 672, 1181
SatI GCNGC 7 cut(s) 33, 228, 264, 500, 717, 1104, 1119
Sau3AI GATC 8 cut(s) 316, 339, 448, 522, 685, 1018, 1201, 1215
Sau96I GGNCC 2 cut(s) 43, 1024
SchI GAGTC 4 cut(s) 464, 573, 1214, 1220
ScrFI CCNGG 4 cut(s) 73, 105, 624, 772
SduI GDGCHC 2 cut(s) 816, 910
SfaNI GCATC 2 cut(s) 728, 862
SfcI CTRYAG 1 cut(s) 552
SinI GGWCC 1 cut(s) 1024
SmiMI CAYNNNNRTG 2 cut(s) 341, 724
SmlI CTYRAG 2 cut(s) 1028, 1180
SmoI CTYRAG 2 cut(s) 1028, 1180
Sse9I AATT 7 cut(s) 81, 167, 405, 576, 651, 756, 932
SsiI CCGC 3 cut(s) 32, 467, 570
SspMI CTAG 1 cut(s) 990
SstI GAGCTC 1 cut(s) 816
StyD4I CCNGG 4 cut(s) 71, 103, 622, 770
StyI CCWWGG 4 cut(s) 459, 543, 1044, 1113
TaaI ACNGT 7 cut(s) 294, 376, 736, 825, 836, 865, 1165
TaqI TCGA 6 cut(s) 26, 49, 390, 1068, 1214, 1218
TasI AATT 7 cut(s) 81, 167, 405, 576, 651, 756, 932
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 2 cut(s) 145, 710
Tru1I TTAA 3 cut(s) 408, 672, 1181
Tru9I TTAA 3 cut(s) 408, 672, 1181
TscAI CASTG 2 cut(s) 604, 1168
TseFI GTSAC 3 cut(s) 175, 422, 1090
TseI GCWGC 6 cut(s) 227, 263, 499, 716, 1103, 1118
Tsp45I GTSAC 3 cut(s) 175, 422, 1090
TspDTI ATGAA 2 cut(s) 137, 302
TspRI CASTG 2 cut(s) 604, 1168
Tth111I GACNNNGTC 1 cut(s) 1188
Vha464I CTTAAG 1 cut(s) 1180
VpaK11BI GGWCC 1 cut(s) 1024
XapI RAATTY 2 cut(s) 651, 932
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 1 cut(s) 990
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.