Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013800

Physical Location & Seq

Genomic Coordinates Forward (+)

10250601 .. 10253148

Gene Structure 2548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G18610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTCTTCGGATCGTCACACACCGACGAAAGATCCACCGGATCATCCGTCTTCTTCCTCCAACCACCACAAGCAACCACTTCCTCCTCAACCGCAGCAACCACTCAGCCGCTATGAATCGCAGAAACGCCGCGACTGGAACACGTTCGTCCAATACCTAAAATCACAAAATCCACCGTTGATGATGTCTCAATTCGACTACACGCACGTGCTAAGTTTCCTAAGGTACTTAGATCAGTTTGGTAAGACCAAAGTACATCATCAAGCTTGTGTCTTCTTCGGACAACCGGATCCACCAGGTCCGTGCACGTGTCCTCTCAAACAAGCTTGGGGAAGCCTAGATGCTTTGATCGGACGGCTAAGAGCTGCTTACGAGGAACACGGTGGCGGGTCACCTGATACTAACCCGTTTGCAAACGGGTCGATCCGGGTTCACTTGAGGGAAGTGAGAGAATCTCAAGCCAAGGCTCGTGGGATTCCGTACAGGAAGAAGAAAAGGAGGAAGACTAAAAACGAGGTCGTTGTTGTCAAGAAGGATGTTGCAAACTCTTCGACTCCTAATCAGTCGTTCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

191

Amino Acids

21.74

Weight (kDa)

9.89

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	30 - 151	1.7e-62	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18610
fragaria_vesca	FvH4_3g07770
malus_domestica	MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica	Prupe.4G061700_v2.0.a1
pyrus_communis	pycom05g27870 pycom10g23350
rosa_chinensis	RchiOBHm_Chr5g0010811
rosa_laevigata	RLG00000031783
rosa_multiflora	Rmu_sc0000109.1_g000015
rosa_rugosa	Rorug04G0452700
rosa_samantha	Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana	Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	132
AciI	CCGC	4 cut(s)	92, 109, 130, 387
AclWI	GGATC	6 cut(s)	18, 26, 48, 284, 297, 418
AcvI	CACGTG	2 cut(s)	208, 309
AfaI	GTAC	3 cut(s)	227, 255, 482
AflIII	ACRYGT	2 cut(s)	141, 308
AjnI	CCWGG	1 cut(s)	295
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	3 cut(s)	266, 326, 365
AluI	AGCT	3 cut(s)	266, 326, 365
Alw21I	GWGCWC	1 cut(s)	308
Alw26I	GTCTC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	304
AlwI	GGATC	6 cut(s)	18, 26, 48, 284, 297, 418
ApaLI	GTGCAC	1 cut(s)	304
ApeKI	GCWGC	2 cut(s)	94, 365
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	428
AsuHPI	GGTGA	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	299
AxyI	CCTNAGG	1 cut(s)	221
BaeGI	GKGCMC	1 cut(s)	308
BamHI	GGATCC	1 cut(s)	289
BauI	CACGAG	1 cut(s)	468
BbrPI	CACGTG	2 cut(s)	208, 309
BbsI	GAAGAC	3 cut(s)	42, 265, 509
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	106, 352
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	4 cut(s)	402, 436, 531, 565
BciT130I	CCWGG	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	4 cut(s)	95, 109, 130, 366
BlsI	GCNGC	4 cut(s)	96, 110, 131, 367
Bme1390I	CCNGG	2 cut(s)	297, 428
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	291
BmrFI	CCNGG	2 cut(s)	297, 428
BmsI	GCATC	1 cut(s)	331
BpiI	GAAGAC	3 cut(s)	42, 265, 509
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpuEI	CTTGAG	2 cut(s)	441, 457
BpuMI	CCSGG	1 cut(s)	428
BsaAI	YACGTR	2 cut(s)	208, 309
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	2 cut(s)	37, 286
Bse1I	ACTGG	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	2 cut(s)	43, 541
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	1 cut(s)	75
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	106, 352
Bsh1236I	CGCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	3 cut(s)	38, 287, 427
BsmAI	GTCTC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
BspACI	CCGC	4 cut(s)	92, 109, 130, 387
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	1 cut(s)	291
BspPI	GGATC	6 cut(s)	18, 26, 48, 284, 297, 418
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
BssSI	CACGAG	1 cut(s)	468
BssT1I	CCWWGG	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	2 cut(s)	177, 383
Bst6I	CTCTTC	1 cut(s)	553
BstBAI	YACGTR	2 cut(s)	208, 309
BstDEI	CTNAG	5 cut(s)	104, 212, 221, 229, 359
BstEII	GGTNACC	1 cut(s)	390
BstF5I	GGATG	2 cut(s)	43, 541
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	7 cut(s)	13, 34, 43, 235, 292, 351, 426
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
BstNI	CCWGG	1 cut(s)	297
BstPI	GGTNACC	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	295, 426
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	2 cut(s)	106, 352
BstV2I	GAAGAC	3 cut(s)	42, 265, 509
BstX2I	RGATCY	2 cut(s)	31, 289
BstYI	RGATCY	2 cut(s)	31, 289
Bsu36I	CCTNAGG	1 cut(s)	221
BtsCI	GGATG	2 cut(s)	43, 541
Cfr13I	GGNCC	1 cut(s)	299
CsiI	ACCWGGT	1 cut(s)	295
Csp6I	GTAC	3 cut(s)	226, 254, 481
CspCI	CAANNNNNGTGG	2 cut(s)	451, 486
CviJI	RGCY	8 cut(s)	108, 266, 326, 336, 358, 365, 461, 467
CviKI_1	RGCY	8 cut(s)	108, 266, 326, 336, 358, 365, 461, 467
CviQI	GTAC	3 cut(s)	226, 254, 481
DdeI	CTNAG	5 cut(s)	104, 212, 221, 229, 359
DpnI	GATC	7 cut(s)	12, 33, 42, 234, 291, 350, 425
DpnII	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
Eam1104I	CTCTTC	1 cut(s)	553
EarI	CTCTTC	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	299
Eco72I	CACGTG	2 cut(s)	208, 309
Eco81I	CCTNAGG	1 cut(s)	221
Eco91I	GGTNACC	1 cut(s)	390
EcoO65I	GGTNACC	1 cut(s)	390
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	462
FaiI	YATR	1 cut(s)	114
FalI	AAGNNNNNCTT	2 cut(s)	352, 384
FauI	CCCGC	1 cut(s)	380
Fnu4HI	GCNGC	4 cut(s)	95, 109, 130, 366
FokI	GGATG	2 cut(s)	30, 548
Fsp4HI	GCNGC	4 cut(s)	95, 109, 130, 366
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	4 cut(s)	95, 109, 130, 366
HapII	CCGG	3 cut(s)	38, 287, 427
HindIII	AAGCTT	2 cut(s)	264, 324
HinfI	GANTC	4 cut(s)	116, 452, 475, 553
HpaII	CCGG	3 cut(s)	38, 287, 427
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	3 cut(s)	306, 433, 570
Hpy188I	TCNGA	3 cut(s)	10, 281, 353
Hpy188III	TCNNGA	1 cut(s)	529
Hpy8I	GTNNAC	3 cut(s)	306, 433, 570
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	177, 383
HpyCH4IV	ACGT	3 cut(s)	143, 207, 308
HpyCH4V	TGCA	3 cut(s)	306, 413, 542
HpyF3I	CTNAG	5 cut(s)	104, 212, 221, 229, 359
HpySE526I	ACGT	3 cut(s)	143, 207, 308
Kzo9I	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
LpnPI	CCDG	8 cut(s)	51, 121, 282, 300, 309, 408, 440, 469
Lsp1109I	GCAGC	2 cut(s)	106, 352
LweI	GCATC	1 cut(s)	331
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	3 cut(s)	143, 207, 308
MaeIII	GTNAC	2 cut(s)	14, 390
MalI	GATC	7 cut(s)	12, 33, 42, 234, 291, 350, 425
MboI	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
MboII	GAAGA	8 cut(s)	42, 45, 265, 268, 499, 502, 514, 540
MflI	RGATCY	2 cut(s)	31, 289
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	1 cut(s)	191
MlyI	GAGTC	1 cut(s)	547
MmeI	TCCRAC	1 cut(s)	84
MnlI	CCTC	8 cut(s)	67, 93, 96, 324, 367, 432, 492, 508
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	3 cut(s)	38, 287, 427
MspR9I	CCNGG	2 cut(s)	297, 428
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	132
NciI	CCSGG	1 cut(s)	428
NdeII	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
NlaIV	GGNNCC	1 cut(s)	291
NmuCI	GTSAC	2 cut(s)	14, 390
OliI	CACNNNNGTG	1 cut(s)	206
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	3 cut(s)	116, 452, 475
PkrI	GCNGC	4 cut(s)	96, 110, 131, 367
PleI	GAGTC	1 cut(s)	547
PmaCI	CACGTG	2 cut(s)	208, 309
PmlI	CACGTG	2 cut(s)	208, 309
PpsI	GAGTC	1 cut(s)	547
Ppu21I	YACGTR	2 cut(s)	208, 309
Psp6I	CCWGG	1 cut(s)	295
PspCI	CACGTG	2 cut(s)	208, 309
PspEI	GGTNACC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	291
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	31, 289
RsaI	GTAC	3 cut(s)	227, 255, 482
RsaNI	GTAC	3 cut(s)	226, 254, 481
RseI	CAYNNNNRTG	1 cut(s)	206
SatI	GCNGC	4 cut(s)	95, 109, 130, 366
Sau3AI	GATC	7 cut(s)	10, 31, 40, 232, 289, 348, 423
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	547
ScrFI	CCNGG	2 cut(s)	297, 428
SduI	GDGCHC	1 cut(s)	308
SexAI	ACCWGGT	1 cut(s)	295
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	2 cut(s)	436, 456
SmoI	CTYRAG	2 cut(s)	436, 456
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	4 cut(s)	92, 109, 130, 387
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	295, 426
StyI	CCWWGG	1 cut(s)	462
TaaI	ACNGT	2 cut(s)	177, 383
TaiI	ACGT	3 cut(s)	146, 210, 311
TaqI	TCGA	3 cut(s)	195, 422, 551
TasI	AATT	1 cut(s)	191
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	2 cut(s)	111, 132
TfiI	GAWTC	3 cut(s)	116, 452, 475
TseFI	GTSAC	2 cut(s)	14, 390
TseI	GCWGC	2 cut(s)	94, 365
Tsp45I	GTSAC	2 cut(s)	14, 390
TspDTI	ATGAA	1 cut(s)	129
TspGWI	ACGGA	3 cut(s)	36, 291, 468
VneI	GTGCAC	1 cut(s)	304
VpaK11BI	GGWCC	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.