RLG00000031783

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013800
Physical Location & Seq
Forward (+)
8203075 .. 8206157
3083 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031783

Sequence Viewer

Length: 495 bp
ATGTCTGGAGATCATAGACGAAAAGATTCCATCGAAGCCTCCTCCTCACGATCCACTAACGCCGATCATCAACAGCAGCAGCAACAAAACCCTCCACCGCTCAGCCGCTACGAGTCTCAGAAGCGCCGGGACTGGAACACCTTCGGCCAGTACCTCAAGAACCAGACCCCTCCGGTTTCCATGTCCCATTGCCAGTTCAACCACGTCCTCGACTTCCTTCGCTACCTCGACCAGTTTGGAAAGACCAAGGTGCACTTACATGGTTGTGTCTTTTTCGGGCAGCCCGACCCTCCTGCCCCTTGCACCTGCCCGCTCCGGCAGGCCTGGGGCAGCCTCGACGCACTGATCGGGCGCCTCAGGGCAGCGTATGAGGAGCACGGAGGAGCACCGGAGACCAACCCTTTCGTTGCTTTGGCTTCTTCGGATCGATTTATGGATCACATATATAACAGGTCATGTGGATGCATGAGATGGATATATATAGCAAGGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

165

Amino Acids

18.8

Weight (kDa)

8.81

Isoelectric Point (pI)

70.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 25 - 138 6.9e-60 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 351
AccBSI CCGCTC 2 cut(s) 100, 313
AciI CCGC 3 cut(s) 98, 106, 311
AclWI GGATC 3 cut(s) 45, 432, 444
AcoI YGGCCR 1 cut(s) 145
AcyI GRCGYC 1 cut(s) 352
AfaI GTAC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 199
AjiI CACGTC 1 cut(s) 205
AjnI CCWGG 1 cut(s) 323
Alw21I GWGCWC 3 cut(s) 255, 378, 388
Alw26I GTCTC 2 cut(s) 120, 386
Alw44I GTGCAC 1 cut(s) 251
AlwI GGATC 3 cut(s) 45, 432, 444
AoxI GGCC 2 cut(s) 145, 321
ApaLI GTGCAC 1 cut(s) 251
ApeKI GCWGC 5 cut(s) 76, 79, 280, 330, 362
Asp700I GAANNNNTTC 2 cut(s) 25, 140
AspLEI GCGC 2 cut(s) 126, 354
AsuC2I CCSGG 1 cut(s) 128
AxyI CCTNAGG 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 255
BanI GGYRCC 1 cut(s) 351
Bbv12I GWGCWC 3 cut(s) 255, 378, 388
BbvI GCAGC 5 cut(s) 88, 91, 292, 342, 374
BccI CCATC 2 cut(s) 38, 465
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BciT130I CCWGG 1 cut(s) 325
BcnI CCSGG 1 cut(s) 128
BcoDI GTCTC 2 cut(s) 120, 386
BfoI RGCGCY 2 cut(s) 127, 355
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 6 cut(s) 77, 80, 106, 281, 331, 363
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 6 cut(s) 78, 81, 107, 282, 332, 364
Bme1390I CCNGG 2 cut(s) 128, 325
BmgBI CACGTC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 353
BmrFI CCNGG 2 cut(s) 128, 325
BmsI GCATC 1 cut(s) 452
BpmI CTGGAG 1 cut(s) 27
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 128
Bsa29I ATCGAT 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 352
BsaI GGTCTC 1 cut(s) 386
BsaJI CCNNGG 2 cut(s) 246, 324
BsaWI WCCGGW 2 cut(s) 172, 388
Bse1I ACTGG 4 cut(s) 137, 148, 193, 232
Bse21I CCTNAGG 1 cut(s) 356
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 325
BseCI ATCGAT 1 cut(s) 427
BseDI CCNNGG 2 cut(s) 246, 324
BseGI GGATG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 187
BseMII CTCAG 3 cut(s) 115, 131, 370
BseNI ACTGG 4 cut(s) 137, 148, 193, 232
BseRI GAGGAG 4 cut(s) 31, 34, 386, 396
BseSI GKGCMC 1 cut(s) 255
BseXI GCAGC 5 cut(s) 88, 91, 292, 342, 374
BshFI GGCC 2 cut(s) 147, 323
BshNI GGYRCC 1 cut(s) 351
BshVI ATCGAT 1 cut(s) 427
BsiHKAI GWGCWC 3 cut(s) 255, 378, 388
BsiSI CCGG 4 cut(s) 127, 173, 316, 389
BslFI GGGAC 2 cut(s) 143, 169
BsmAI GTCTC 2 cut(s) 120, 386
BsmFI GGGAC 2 cut(s) 143, 169
BsnI GGCC 2 cut(s) 147, 323
Bso31I GGTCTC 1 cut(s) 386
Bsp1286I GDGCHC 3 cut(s) 255, 378, 388
Bsp143I GATC 6 cut(s) 10, 50, 64, 345, 424, 436
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 3 cut(s) 98, 106, 311
BspANI GGCC 2 cut(s) 147, 323
BspCNI CTCAG 3 cut(s) 114, 130, 369
BspDI ATCGAT 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 353
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 3 cut(s) 45, 432, 444
BspT107I GGYRCC 1 cut(s) 351
BspTNI GGTCTC 1 cut(s) 386
BsrBI CCGCTC 2 cut(s) 100, 313
BsrDI GCAATG 1 cut(s) 187
BsrI ACTGG 4 cut(s) 137, 148, 193, 232
BssECI CCNNGG 2 cut(s) 246, 324
BssMI GATC 6 cut(s) 10, 50, 64, 345, 424, 436
BssNI GRCGYC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 325
BstACI GRCGYC 1 cut(s) 352
BstC8I GCNNGC 2 cut(s) 311, 321
BstDEI CTNAG 3 cut(s) 101, 117, 356
BstF5I GGATG 1 cut(s) 467
BstH2I RGCGCY 2 cut(s) 127, 355
BstHHI GCGC 2 cut(s) 126, 354
BstKTI GATC 6 cut(s) 13, 53, 67, 348, 427, 439
BstMAI GTCTC 2 cut(s) 120, 386
BstMBI GATC 6 cut(s) 10, 50, 64, 345, 424, 436
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 2 cut(s) 126, 323
BstSLI GKGCMC 1 cut(s) 255
BstV1I GCAGC 5 cut(s) 88, 91, 292, 342, 374
Bsu15I ATCGAT 1 cut(s) 427
Bsu36I CCTNAGG 1 cut(s) 356
BsuRI GGCC 2 cut(s) 147, 323
BsuTUI ATCGAT 1 cut(s) 427
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 467
BtsIMutI CAGTG 1 cut(s) 341
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 2 cut(s) 311, 321
CfoI GCGC 2 cut(s) 126, 354
ClaI ATCGAT 1 cut(s) 427
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 151
CviAII CATG 4 cut(s) 181, 260, 456, 466
CviJI RGCY 7 cut(s) 38, 105, 147, 283, 323, 333, 416
CviKI_1 RGCY 7 cut(s) 38, 105, 147, 283, 323, 333, 416
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 101, 117, 356
DinI GGCGCC 1 cut(s) 353
DpnI GATC 6 cut(s) 12, 52, 66, 347, 426, 438
DpnII GATC 6 cut(s) 10, 50, 64, 345, 424, 436
EaeI YGGCCR 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 386
Eco81I CCTNAGG 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 353
EheI GGCGCC 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 184, 263, 459, 469
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 2 cut(s) 143, 169
FatI CATG 4 cut(s) 180, 259, 455, 465
FauI CCCGC 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 77, 80, 106, 281, 331, 363
FokI GGATG 1 cut(s) 474
Fsp4HI GCNGC 6 cut(s) 77, 80, 106, 281, 331, 363
GlaI GCGC 2 cut(s) 125, 353
GluI GCNGC 6 cut(s) 77, 80, 106, 281, 331, 363
GsuI CTGGAG 1 cut(s) 27
HaeII RGCGCY 2 cut(s) 127, 355
HaeIII GGCC 2 cut(s) 147, 323
HapII CCGG 4 cut(s) 127, 173, 316, 389
HgaI GACGC 1 cut(s) 347
HhaI GCGC 2 cut(s) 126, 354
Hin1I GRCGYC 1 cut(s) 352
Hin1II CATG 4 cut(s) 184, 263, 459, 469
Hin6I GCGC 2 cut(s) 124, 352
HinP1I GCGC 2 cut(s) 124, 352
HinfI GANTC 2 cut(s) 26, 113
HpaII CCGG 4 cut(s) 127, 173, 316, 389
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 120, 424
Hpy188III TCNNGA 3 cut(s) 6, 48, 157
Hpy8I GTNNAC 1 cut(s) 253
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 151, 227
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 253, 303, 465
HpyF3I CTNAG 3 cut(s) 101, 117, 356
HpySE526I ACGT 1 cut(s) 204
Hsp92I GRCGYC 1 cut(s) 352
Hsp92II CATG 4 cut(s) 184, 263, 459, 469
HspAI GCGC 2 cut(s) 124, 352
KasI GGCGCC 1 cut(s) 351
Kzo9I GATC 6 cut(s) 10, 50, 64, 345, 424, 436
LmnI GCTCC 3 cut(s) 318, 373, 383
Lsp1109I GCAGC 5 cut(s) 88, 91, 292, 342, 374
LweI GCATC 1 cut(s) 452
MaeII ACGT 1 cut(s) 204
MalI GATC 6 cut(s) 12, 52, 66, 347, 426, 438
MbiI CCGCTC 2 cut(s) 100, 313
MboI GATC 6 cut(s) 10, 50, 64, 345, 424, 436
MboII GAAGA 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 255, 378, 388
Mly113I GGCGCC 1 cut(s) 352
MlyI GAGTC 1 cut(s) 122
Mph1103I ATGCAT 1 cut(s) 467
MroXI GAANNNNTTC 2 cut(s) 25, 140
MslI CAYNNNNRTG 3 cut(s) 258, 264, 460
MspI CCGG 4 cut(s) 127, 173, 316, 389
MspR9I CCNGG 2 cut(s) 128, 325
MvaI CCWGG 1 cut(s) 325
NarI GGCGCC 1 cut(s) 352
NciI CCSGG 1 cut(s) 128
NdeII GATC 6 cut(s) 10, 50, 64, 345, 424, 436
NlaIII CATG 4 cut(s) 184, 263, 459, 469
NlaIV GGNNCC 1 cut(s) 353
NsiI ATGCAT 1 cut(s) 467
PaqCI CACCTGC 1 cut(s) 314
PceI AGGCCT 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 2 cut(s) 25, 140
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 6 cut(s) 78, 81, 107, 282, 332, 364
PleI GAGTC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 353
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
RseI CAYNNNNRTG 3 cut(s) 258, 264, 460
SatI GCNGC 6 cut(s) 77, 80, 106, 281, 331, 363
Sau3AI GATC 6 cut(s) 10, 50, 64, 345, 424, 436
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 2 cut(s) 128, 325
SduI GDGCHC 3 cut(s) 255, 378, 388
SetI ASST 8 cut(s) 143, 156, 207, 228, 252, 308, 455, 491
SfaNI GCATC 1 cut(s) 452
SfoI GGCGCC 1 cut(s) 353
SmiMI CAYNNNNRTG 3 cut(s) 258, 264, 460
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 3 cut(s) 98, 106, 311
SspDI GGCGCC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 2 cut(s) 126, 323
StyI CCWWGG 1 cut(s) 246
TaiI ACGT 1 cut(s) 207
TaqI TCGA 5 cut(s) 33, 210, 228, 336, 427
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 26
TscAI CASTG 1 cut(s) 348
TseI GCWGC 5 cut(s) 76, 79, 280, 330, 362
TspGWI ACGGA 1 cut(s) 393
TspRI CASTG 1 cut(s) 348
VneI GTGCAC 1 cut(s) 251
XmnI GAANNNNTTC 2 cut(s) 25, 140
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.