MD10G1279800.v1.1

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0013800
Physical Location & Seq
Reverse (-)
37072343 .. 37076211
3869 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1279800.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTCTGCACCCCATCATGATCACGGTCATCGAAGAAAAGATTCCACTCCCATCGAGGGCTCCTCCTCCTCCTCATCACGATCCACTTCTCAGCAACAGAAAGCACCTCAACCCCTCAGCCGATACGAGTCTCAGAAACGCCGCGACTGGAACACTTTCGGCCAGTACTTGAAGAACCAATCACCTCCAGTCTCACTCTCTCATTGCAACTGCAACCACGTCCTCGATTTCCTCCGCTACTTGGATCAGTTCGGAAAGACTAAGGTTCACTTACACGGTTGCGTCTTCTTTGGGCAGCCTGACCCGCCTGCCCCGTGCACCTGCCCCCTCAGGCAGGCATGGGGCAGTCTGGACGCGCTGATCGGACGCCTCCGTGCTGCCTACGAGGAGCATGGAGGGTCTCCGGAGACAAACCCTTTTGGGAATGGAGCTATTCGGGTTTACTTACGTGAAGTGAAGGAGTGTCAGGCTAAAGCAAGAGGGATTCCGTACAAGAAGAAGAAGAAGAAGAAGAGGAACGGTCAGCTTAAGGCAATTAACGACGAGGGTACTCTGAAGCAGATCACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

191

Amino Acids

21.37

Weight (kDa)

9.79

Isoelectric Point (pI)

58.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 30 - 154 2.4e-66 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013800)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G18610
fragaria_vesca FvH4_3g07770
malus_domestica MD05G1300800.v1.1 MD10G1279800.v1.1
prunus_persica Prupe.4G061700_v2.0.a1
pyrus_communis pycom05g27870 pycom10g23350
rosa_chinensis RchiOBHm_Chr5g0010811
rosa_laevigata RLG00000031783
rosa_multiflora Rmu_sc0000109.1_g000015
rosa_rugosa Rorug04G0452700
rosa_samantha Rh5AG085000 Rh5BG079700 Rh5CG092400 Rh5DG079900
rosa_wichuraiana Rw0G017960 Rw0G022240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 329
Acc36I ACCTGC 1 cut(s) 329
AccII CGCG 2 cut(s) 144, 356
AccIII TCCGGA 1 cut(s) 403
AciI CCGC 3 cut(s) 142, 235, 305
AclWI GGATC 2 cut(s) 75, 252
AcoI YGGCCR 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 3 cut(s) 167, 491, 550
AfiI CCNNNNNNNGG 3 cut(s) 56, 241, 334
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 1 cut(s) 172
AjiI CACGTC 1 cut(s) 220
AluBI AGCT 2 cut(s) 431, 526
AluI AGCT 2 cut(s) 431, 526
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 4 cut(s) 135, 196, 401, 405
Alw44I GTGCAC 1 cut(s) 316
AlwI GGATC 2 cut(s) 75, 252
Aor13HI TCCGGA 1 cut(s) 403
AoxI GGCC 1 cut(s) 160
ApaLI GTGCAC 1 cut(s) 316
ApeKI GCWGC 2 cut(s) 295, 377
Asp700I GAANNNNTTC 2 cut(s) 40, 155
AspLEI GCGC 1 cut(s) 358
AsuHPI GGTGA 1 cut(s) 174
AxyI CCTNAGG 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 62
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 1 cut(s) 320
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 307, 364
BccI CCATC 2 cut(s) 21, 59
BclI TGATCA 1 cut(s) 19
BcoDI GTCTC 4 cut(s) 135, 196, 401, 405
BfrI CTTAAG 1 cut(s) 527
BfuAI ACCTGC 1 cut(s) 329
BisI GCNGC 3 cut(s) 142, 296, 378
BlsI GCNGC 3 cut(s) 143, 297, 379
BmcAI AGTACT 1 cut(s) 167
BmgBI CACGTC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 61
BpiI GAAGAC 1 cut(s) 277
BplI GAGNNNNNCTC 2 cut(s) 47, 79
BpmI CTGGAG 1 cut(s) 171
Bpu10I CCTNAGC 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 449
BsaHI GRCGYC 1 cut(s) 367
BsaI GGTCTC 1 cut(s) 405
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 3 cut(s) 56, 241, 334
Bse1I ACTGG 3 cut(s) 152, 163, 188
Bse21I CCTNAGG 1 cut(s) 329
Bse3DI GCAATG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 403
BseLI CCNNNNNNNGG 3 cut(s) 56, 241, 334
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 4 cut(s) 104, 130, 146, 343
BseNI ACTGG 3 cut(s) 152, 163, 188
BseRI GAGGAG 5 cut(s) 52, 55, 58, 61, 401
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 2 cut(s) 307, 364
Bsh1236I CGCG 2 cut(s) 144, 356
BshFI GGCC 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 320
BsiSI CCGG 1 cut(s) 404
BslI CCNNNNNNNGG 3 cut(s) 56, 241, 334
BsmAI GTCTC 4 cut(s) 135, 196, 401, 405
BsnI GGCC 1 cut(s) 162
Bso31I GGTCTC 1 cut(s) 405
Bsp1286I GDGCHC 2 cut(s) 62, 320
Bsp13I TCCGGA 1 cut(s) 403
Bsp143I GATC 5 cut(s) 19, 80, 244, 360, 561
BspACI CCGC 3 cut(s) 142, 235, 305
BspANI GGCC 1 cut(s) 162
BspCNI CTCAG 4 cut(s) 103, 129, 145, 342
BspEI TCCGGA 1 cut(s) 403
BspFNI CGCG 2 cut(s) 144, 356
BspHI TCATGA 1 cut(s) 16
BspLI GGNNCC 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 2 cut(s) 75, 252
BspTI CTTAAG 1 cut(s) 527
BspTNI GGTCTC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 3 cut(s) 152, 163, 188
BssMI GATC 5 cut(s) 19, 80, 244, 360, 561
BssNI GRCGYC 1 cut(s) 367
Bst4CI ACNGT 3 cut(s) 26, 278, 521
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 367
BstAFI CTTAAG 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 309, 336
BstDEI CTNAG 5 cut(s) 90, 116, 132, 261, 329
BstENI CCTNNNNNAGG 1 cut(s) 332
BstFNI CGCG 2 cut(s) 144, 356
BstHHI GCGC 1 cut(s) 358
BstKTI GATC 5 cut(s) 22, 83, 247, 363, 564
BstMAI GTCTC 4 cut(s) 135, 196, 401, 405
BstMBI GATC 5 cut(s) 19, 80, 244, 360, 561
BstMWI GCNNNNNNNGC 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 320
BstUI CGCG 2 cut(s) 144, 356
BstV1I GCAGC 2 cut(s) 307, 364
BstV2I GAAGAC 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 329
BsuRI GGCC 1 cut(s) 162
BtrI CACGTC 1 cut(s) 220
BveI ACCTGC 1 cut(s) 329
Cac8I GCNNGC 2 cut(s) 309, 336
CciI TCATGA 1 cut(s) 16
CfoI GCGC 1 cut(s) 358
CseI GACGC 3 cut(s) 271, 362, 375
Csp6I GTAC 3 cut(s) 166, 490, 549
CviAII CATG 3 cut(s) 17, 339, 392
CviJI RGCY 7 cut(s) 60, 120, 162, 298, 431, 470, 526
CviKI_1 RGCY 7 cut(s) 60, 120, 162, 298, 431, 470, 526
CviQI GTAC 3 cut(s) 166, 490, 549
DdeI CTNAG 5 cut(s) 90, 116, 132, 261, 329
DpnI GATC 5 cut(s) 21, 82, 246, 362, 563
DpnII GATC 5 cut(s) 19, 80, 244, 360, 561
EaeI YGGCCR 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco24I GRGCYC 1 cut(s) 62
Eco31I GGTCTC 1 cut(s) 405
Eco81I CCTNAGG 1 cut(s) 329
EcoNI CCTNNNNNAGG 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 62
FaeI CATG 3 cut(s) 20, 342, 395
FaiI YATR 3 cut(s) 18, 340, 393
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FatI CATG 3 cut(s) 16, 338, 391
FauI CCCGC 1 cut(s) 312
FbaI TGATCA 1 cut(s) 19
Fnu4HI GCNGC 3 cut(s) 142, 296, 378
FriOI GRGCYC 1 cut(s) 62
Fsp4HI GCNGC 3 cut(s) 142, 296, 378
GlaI GCGC 1 cut(s) 357
GluI GCNGC 3 cut(s) 142, 296, 378
GsuI CTGGAG 1 cut(s) 171
HaeIII GGCC 1 cut(s) 162
HapII CCGG 1 cut(s) 404
HgaI GACGC 3 cut(s) 271, 362, 375
HhaI GCGC 1 cut(s) 358
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 3 cut(s) 20, 342, 395
Hin6I GCGC 1 cut(s) 356
HinP1I GCGC 1 cut(s) 356
HinfI GANTC 3 cut(s) 41, 128, 484
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 174
Hpy166II GTNNAC 3 cut(s) 268, 318, 442
Hpy188I TCNGA 4 cut(s) 135, 254, 365, 555
Hpy188III TCNNGA 4 cut(s) 17, 78, 350, 404
Hpy8I GTNNAC 3 cut(s) 268, 318, 442
Hpy99I CGWCG 1 cut(s) 545
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 3 cut(s) 26, 278, 521
HpyCH4IV ACGT 2 cut(s) 219, 448
HpyCH4V TGCA 4 cut(s) 8, 207, 213, 318
HpyF10VI GCNNNNNNNGC 1 cut(s) 304
HpyF3I CTNAG 5 cut(s) 90, 116, 132, 261, 329
HpySE526I ACGT 2 cut(s) 219, 448
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 3 cut(s) 20, 342, 395
HspAI GCGC 1 cut(s) 356
Kpn2I TCCGGA 1 cut(s) 403
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 5 cut(s) 19, 80, 244, 360, 561
LmnI GCTCC 3 cut(s) 65, 388, 428
Lsp1109I GCAGC 2 cut(s) 307, 364
MaeII ACGT 2 cut(s) 219, 448
MalI GATC 5 cut(s) 21, 82, 246, 362, 563
MboI GATC 5 cut(s) 19, 80, 244, 360, 561
MboII GAAGA 9 cut(s) 45, 184, 277, 508, 511, 514, 517, 520, 523
MhlI GDGCHC 2 cut(s) 62, 320
MluCI AATT 1 cut(s) 534
MlyI GAGTC 1 cut(s) 137
MroI TCCGGA 1 cut(s) 403
MroXI GAANNNNTTC 2 cut(s) 40, 155
MseI TTAA 3 cut(s) 528, 537, 571
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 1 cut(s) 404
MvnI CGCG 2 cut(s) 144, 356
MwoI GCNNNNNNNGC 1 cut(s) 304
NdeII GATC 5 cut(s) 19, 80, 244, 360, 561
NlaIII CATG 3 cut(s) 20, 342, 395
NlaIV GGNNCC 1 cut(s) 61
PagI TCATGA 1 cut(s) 16
PaqCI CACCTGC 1 cut(s) 329
PdmI GAANNNNTTC 2 cut(s) 40, 155
PfeI GAWTC 2 cut(s) 41, 484
PkrI GCNGC 3 cut(s) 143, 297, 379
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 61
RsaI GTAC 3 cut(s) 167, 491, 550
RsaNI GTAC 3 cut(s) 166, 490, 549
SaqAI TTAA 3 cut(s) 528, 537, 571
SatI GCNGC 3 cut(s) 142, 296, 378
Sau3AI GATC 5 cut(s) 19, 80, 244, 360, 561
ScaI AGTACT 1 cut(s) 167
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 2 cut(s) 62, 320
SetI ASST 8 cut(s) 109, 187, 222, 267, 323, 433, 451, 528
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 1 cut(s) 534
SsiI CCGC 3 cut(s) 142, 235, 305
TaaI ACNGT 3 cut(s) 26, 278, 521
TaiI ACGT 2 cut(s) 222, 451
TaqI TCGA 3 cut(s) 31, 54, 225
TasI AATT 1 cut(s) 534
TatI WGTACW 1 cut(s) 165
TauI GCSGC 1 cut(s) 144
TfiI GAWTC 2 cut(s) 41, 484
Tru1I TTAA 3 cut(s) 528, 537, 571
Tru9I TTAA 3 cut(s) 528, 537, 571
TseI GCWGC 2 cut(s) 295, 377
TspGWI ACGGA 2 cut(s) 362, 477
Vha464I CTTAAG 1 cut(s) 527
VneI GTGCAC 1 cut(s) 316
XagI CCTNNNNNAGG 1 cut(s) 332
XmnI GAANNNNTTC 2 cut(s) 40, 155
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.