Rorug04G0452700

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000141
Physical Location & Seq
Forward (+)
60704908 .. 60709671
4764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0452700.1

Sequence Viewer

Length: 1665 bp
ATGGTAGTGATCATGATCTCCTCTGCACCCGCGTCGCACCCAATCACTCCCTCCCCCTCCTCCACCACCACCGCCGTCGCCGCCATTAGATCATCTACGGCCACCACCCCCGCACACTCTCAGCTCCCGTCGCCTCTCTCCCGCCTCCCCCTTCCGCCGACGCTCGACCATGTGCTGCCGATCCCTGACGCCGCCGCCGGGACGACAATCCCGTGCCAGCTGGCCCGGGTTCGGATCTCGGATATTTCCCCCTACGACGGAGCCCCGACCGGGCCGTATGTGAGGGCGGTGGAGGCGCTGTCGGGGTCTCTGATGAGGCACAACGCCGCCGTCATCGAATTGGGAGCCGACGACGCTGCGCTGTTGCGCTGCGGCGTGGAAGCTTCCAGATTGTATTTTCGGAGCAGAGCTCAGCTTGGCGCCGGCAAAGGAAGCCGTGGAGTTTACATGTACAGGGCCGGAAGGGCTTTGGAAGATTGGGACTCATCACCGCCGTGTATGGCTGATGTTTTCAGGTGCATGGGGAAGGTGGCACGCGTGGCATTGTCTGCAATAGCAAGGCATCTTCGTTTGCGCAGCGATGTTTTTAGCCATTTGCTTGATGATACTCCATTGCCGGCTAATGAAGTGTCCTCGTCAGTGCTTTTGGCAGCCTACACGAATGCATCGTTGCAGAATGGGAAGGGTGCTATTGGGGGAGGGAAGCCAGGAATTAATGGTGAAGTGGAGAAGGGATTGTTGACATTGATTTCTTCGGACAGTCCTGGTATACAGGTGTGTGACCCCAATGGTCGTTGGTACTTGGCAGACAGTGGGTCAGCTCCTGGGGATCTTTTACTACTTACAGGTAAGGCACTCAGCCATGCTACCGCTGGCCTTCGCCCTGCTGCATCCTATAAAGCTGCTCCTGATTATTCCTCAGGCGTTAATAGTGGTGGGAGGACATCACTTGCATTTAGGCTCATGCCACAAGGTAATGCTATATTAGATTGTTCTCCCATTGCAGCAGCTGGTCATGTCATTCCCCAGAGTTATGTCCCAATATCTGTAAGCCAGTTTATGGACGATCTTTCTGCTGAGGAAGATGTTTTGTGCAATCATTCTGATAGTGCTTTTGTACCTCGAATCAATTTAAATAAGGATCCCTCATTAAGAAGTGTTCTCTCAGATCCCCTATCTGGTGCATTCCTTGAAGATGCCATGGTAGTTTCCTGCGGGCATTCATTTGGCGGTCTCATGTTGAGAAGAGTCATTGAATCATCAAGATGTACCCTCTGCAATGCAGAAATTGAGACCAGGTCTTTGGTTCCTAATCTTGCTCTTAGAGCTGCAGCTGCAGCAGTGAAGCTTGAGGATGATCGAAGGCTATTTCATAATGCTACTATCCGCAAGCGTCGGAAAGAGTTGGGTGACCAAATGGATCCATCACGAAGACCAAATAGGGAAAATGGAGATGTTGGTGATGATGGGATTAATCGTGGGGTGCAGTATCCGTTTTCAGTGAATGAAAAAGTAATGATTAAGGGGAATCGAAGGACTCCTGAAAAATTTGTTGGCAAGGAGGCAGTCATCACATCCCAGTGTCTGAATGGCTGGTACTTGCTTAAGATTATTGGAAGCGGAGAGAATGTTCGGTTGCAATACCGTTCACTGAGGAAGATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF640

Protein Analysis

554

Amino Acids

58.98

Weight (kDa)

8.89

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUB62-63_C PF23112 495 - 553 1.3e-36 U-box protein 62/63 C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 575
AccB1I GGYRCC 1 cut(s) 419
AccB7I CCANNNNNTGG 1 cut(s) 1060
AccI GTMKAC 1 cut(s) 769
AccII CGCG 2 cut(s) 32, 537
AclWI GGATC 8 cut(s) 175, 242, 837, 1136, 1149, 1163, 1415, 1428
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 1547
AcyI GRCGYC 2 cut(s) 189, 420
AfaI GTAC 5 cut(s) 452, 800, 1119, 1270, 1598
AfiI CCNNNNNNNGG 6 cut(s) 198, 231, 257, 270, 1060, 1178
AflII CTTAAG 1 cut(s) 1604
AflIII ACRYGT 2 cut(s) 447, 535
AgsI TTSAA 2 cut(s) 1193, 1256
AhdI GACNNNNNGTC 1 cut(s) 814
AjnI CCWGG 4 cut(s) 706, 763, 823, 1295
AjuI GAANNNNNNNTTGG 2 cut(s) 1536, 1568
AleI CACNNNNGTG 1 cut(s) 493
AloI GAACNNNNNNTCC 2 cut(s) 1614, 1646
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 3 cut(s) 312, 1238, 1286
AlwI GGATC 8 cut(s) 175, 242, 837, 1136, 1149, 1163, 1415, 1428
AlwNI CAGNNNCTG 3 cut(s) 824, 1010, 1585
Ama87I CYCGRG 1 cut(s) 225
AoxI GGCC 5 cut(s) 99, 222, 272, 456, 874
ApoI RAATTY 1 cut(s) 1547
ArsI GACNNNNNNTTYG 2 cut(s) 1285, 1317
AseI ATTAAT 2 cut(s) 714, 1473
AspLEI GCGC 5 cut(s) 298, 361, 369, 422, 576
AspS9I GGNCC 3 cut(s) 223, 272, 456
AsuC2I CCSGG 4 cut(s) 199, 226, 227, 271
AsuHPI GGTGA 4 cut(s) 480, 731, 1421, 1472
AvaI CYCGRG 1 cut(s) 225
AxyI CCTNAGG 1 cut(s) 919
BamHI GGATCC 2 cut(s) 1141, 1420
BanI GGYRCC 1 cut(s) 419
BanII GRGCYC 2 cut(s) 265, 412
BbsI GAAGAC 1 cut(s) 1438
Bbv12I GWGCWC 1 cut(s) 412
BbvCI CCTCAGC 1 cut(s) 1077
BccI CCATC 2 cut(s) 1432, 1460
BceAI ACGGC 6 cut(s) 59, 114, 259, 314, 420, 478
BcgI CGANNNNNNTGC 6 cut(s) 15, 49, 338, 372, 1055, 1089
BciT130I CCWGG 4 cut(s) 708, 765, 825, 1297
BciVI GTATCC 1 cut(s) 1500
BclI TGATCA 1 cut(s) 9
BcnI CCSGG 4 cut(s) 199, 226, 227, 271
BcoDI GTCTC 3 cut(s) 312, 1238, 1286
BfaI CTAG 1 cut(s) 1663
BfmI CTRYAG 2 cut(s) 1329, 1335
BfoI RGCGCY 2 cut(s) 299, 423
BfrI CTTAAG 1 cut(s) 1604
BfuI GTATCC 1 cut(s) 1500
BglI GCCNNNNNGGC 1 cut(s) 464
BglII AGATCT 1 cut(s) 1659
BlpI GCTNAGC 1 cut(s) 411
Bme1390I CCNGG 8 cut(s) 199, 226, 227, 271, 708, 765, 825, 1297
BmeRI GACNNNNNGTC 1 cut(s) 814
BmeT110I CYCGRG 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 223, 272, 456
BmiI GGNNCC 6 cut(s) 262, 346, 421, 1143, 1308, 1422
BmrFI CCNGG 8 cut(s) 199, 226, 227, 271, 708, 765, 825, 1297
BmrI ACTGGG 1 cut(s) 1573
BmsI GCATC 4 cut(s) 571, 674, 899, 1186
BmuI ACTGGG 1 cut(s) 1573
BpiI GAAGAC 1 cut(s) 1438
BplI GAGNNNNNCTC 2 cut(s) 394, 426
Bpu10I CCTNAGC 1 cut(s) 1077
Bpu1102I GCTNAGC 1 cut(s) 411
BpuEI CTTGAG 1 cut(s) 1370
BpuMI CCSGG 4 cut(s) 199, 226, 227, 271
BsaBI GATNNNNATC 1 cut(s) 14
BsaHI GRCGYC 2 cut(s) 189, 420
BsaI GGTCTC 3 cut(s) 312, 1238, 1286
BsaJI CCNNGG 4 cut(s) 225, 436, 824, 1200
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 1614, 1644
Bsc4I CCNNNNNNNGG 6 cut(s) 198, 231, 257, 270, 1060, 1178
Bse118I RCCGGY 2 cut(s) 422, 616
Bse1I ACTGG 2 cut(s) 1054, 1579
Bse21I CCTNAGG 1 cut(s) 919
Bse3DI GCAATG 3 cut(s) 611, 999, 1285
Bse8I GATNNNNATC 1 cut(s) 14
BseBI CCWGG 4 cut(s) 708, 765, 825, 1297
BseDI CCNNGG 4 cut(s) 225, 436, 824, 1200
BseGI GGATG 3 cut(s) 890, 1360, 1574
BseJI GATNNNNATC 1 cut(s) 14
BseLI CCNNNNNNNGG 6 cut(s) 198, 231, 257, 270, 1060, 1178
BseMI GCAATG 3 cut(s) 611, 999, 1285
BseMII CTCAG 7 cut(s) 134, 425, 871, 933, 1068, 1179, 1643
BseNI ACTGG 2 cut(s) 1054, 1579
BseRI GAGGAG 2 cut(s) 10, 49
BsgI GTGCAG 2 cut(s) 9, 1505
Bsh1236I CGCG 2 cut(s) 32, 537
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 5 cut(s) 101, 224, 274, 458, 876
BshNI GGYRCC 1 cut(s) 419
BsiEI CGRYCG 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 412
BsiHKCI CYCGRG 1 cut(s) 225
BsiSI CCGG 6 cut(s) 198, 226, 270, 423, 459, 617
BslFI GGGAC 3 cut(s) 214, 494, 1022
BslI CCNNNNNNNGG 6 cut(s) 198, 231, 257, 270, 1060, 1178
BsmAI GTCTC 3 cut(s) 312, 1238, 1286
BsmFI GGGAC 3 cut(s) 214, 494, 1022
BsmI GAATGC 3 cut(s) 667, 1184, 1219
BsnI GGCC 5 cut(s) 101, 224, 274, 458, 876
Bso31I GGTCTC 3 cut(s) 312, 1238, 1286
BsoBI CYCGRG 1 cut(s) 225
Bsp1286I GDGCHC 2 cut(s) 265, 412
Bsp1407I TGTACA 1 cut(s) 450
Bsp1720I GCTNAGC 1 cut(s) 411
Bsp19I CCATGG 1 cut(s) 1200
BspANI GGCC 5 cut(s) 101, 224, 274, 458, 876
BspCNI CTCAG 7 cut(s) 133, 424, 870, 932, 1069, 1178, 1644
BspFNI CGCG 2 cut(s) 32, 537
BspHI TCATGA 1 cut(s) 12
BspLI GGNNCC 6 cut(s) 262, 346, 421, 1143, 1308, 1422
BspMAI CTGCAG 2 cut(s) 1333, 1339
BspPI GGATC 8 cut(s) 175, 242, 837, 1136, 1149, 1163, 1415, 1428
BspT107I GGYRCC 1 cut(s) 419
BspTI CTTAAG 1 cut(s) 1604
BspTNI GGTCTC 3 cut(s) 312, 1238, 1286
BsrDI GCAATG 3 cut(s) 611, 999, 1285
BsrFI RCCGGY 2 cut(s) 422, 616
BsrGI TGTACA 1 cut(s) 450
BsrI ACTGG 2 cut(s) 1054, 1579
BssAI RCCGGY 2 cut(s) 422, 616
BssECI CCNNGG 4 cut(s) 225, 436, 824, 1200
BssNAI GTATAC 1 cut(s) 770
BssNI GRCGYC 2 cut(s) 189, 420
BssT1I CCWWGG 1 cut(s) 1200
Bst1107I GTATAC 1 cut(s) 770
Bst2UI CCWGG 4 cut(s) 708, 765, 825, 1297
Bst4CI ACNGT 3 cut(s) 761, 812, 1646
Bst6I CTCTTC 1 cut(s) 1240
BstACI GRCGYC 2 cut(s) 189, 420
BstAFI CTTAAG 1 cut(s) 1604
BstAPI GCANNNNNTGC 1 cut(s) 548
BstAUI TGTACA 1 cut(s) 450
BstC8I GCNNGC 8 cut(s) 218, 222, 424, 535, 618, 874, 1217, 1391
BstDEI CTNAG 8 cut(s) 120, 411, 857, 919, 1077, 1165, 1322, 1652
BstDSI CCRYGG 2 cut(s) 436, 1200
BstEII GGTNACC 1 cut(s) 1409
BstF5I GGATG 3 cut(s) 890, 1360, 1574
BstFNI CGCG 2 cut(s) 32, 537
BstH2I RGCGCY 2 cut(s) 299, 423
BstHHI GCGC 5 cut(s) 298, 361, 369, 422, 576
BstMAI GTCTC 3 cut(s) 312, 1238, 1286
BstMCI CGRYCG 1 cut(s) 270
BstNI CCWGG 4 cut(s) 708, 765, 825, 1297
BstNSI RCATGY 1 cut(s) 451
BstPI GGTNACC 1 cut(s) 1409
BstSCI CCNGG 8 cut(s) 197, 224, 225, 269, 706, 763, 823, 1295
BstSFI CTRYAG 2 cut(s) 1329, 1335
BstUI CGCG 2 cut(s) 32, 537
BstV2I GAAGAC 1 cut(s) 1438
BstX2I RGATCY 6 cut(s) 234, 829, 1141, 1168, 1420, 1659
BstXI CCANNNNNNTGG 1 cut(s) 1303
BstYI RGATCY 6 cut(s) 234, 829, 1141, 1168, 1420, 1659
BstZ17I GTATAC 1 cut(s) 770
Bsu36I CCTNAGG 1 cut(s) 919
BsuI GTATCC 1 cut(s) 1500
BsuRI GGCC 5 cut(s) 101, 224, 274, 458, 876
BtgI CCRYGG 2 cut(s) 436, 1200
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 3 cut(s) 890, 1360, 1574
BtsI GCAGTG 1 cut(s) 1347
BtsIMutI CAGTG 6 cut(s) 645, 817, 1347, 1506, 1586, 1649
Cac8I GCNNGC 8 cut(s) 218, 222, 424, 535, 618, 874, 1217, 1391
CaiI CAGNNNCTG 3 cut(s) 824, 1010, 1585
CciI TCATGA 1 cut(s) 12
CfoI GCGC 5 cut(s) 298, 361, 369, 422, 576
Cfr10I RCCGGY 2 cut(s) 422, 616
Cfr13I GGNCC 3 cut(s) 223, 272, 456
Cfr9I CCCGGG 1 cut(s) 225
CseI GACGC 5 cut(s) 21, 169, 197, 362, 1382
CsiI ACCWGGT 1 cut(s) 1295
Csp6I GTAC 5 cut(s) 451, 799, 1118, 1269, 1597
CviAII CATG 9 cut(s) 13, 170, 448, 520, 863, 964, 1016, 1201, 1237
CviQI GTAC 5 cut(s) 451, 799, 1118, 1269, 1597
DdeI CTNAG 8 cut(s) 120, 411, 857, 919, 1077, 1165, 1322, 1652
DinI GGCGCC 1 cut(s) 421
DraI TTTAAA 1 cut(s) 1134
DriI GACNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 1240
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 1240
EciI GGCGGA 1 cut(s) 144
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 1200
Eco24I GRGCYC 2 cut(s) 265, 412
Eco31I GGTCTC 3 cut(s) 312, 1238, 1286
Eco53kI GAGCTC 1 cut(s) 410
Eco81I CCTNAGG 1 cut(s) 919
Eco88I CYCGRG 1 cut(s) 225
Eco91I GGTNACC 1 cut(s) 1409
EcoICRI GAGCTC 1 cut(s) 410
EcoO65I GGTNACC 1 cut(s) 1409
EcoRII CCWGG 4 cut(s) 706, 763, 823, 1295
EcoT14I CCWWGG 1 cut(s) 1200
EcoT22I ATGCAT 1 cut(s) 667
EcoT38I GRGCYC 2 cut(s) 265, 412
EgeI GGCGCC 1 cut(s) 421
EheI GGCGCC 1 cut(s) 421
ErhI CCWWGG 1 cut(s) 1200
FaeI CATG 9 cut(s) 16, 173, 451, 523, 866, 967, 1019, 1204, 1240
FaqI GGGAC 3 cut(s) 214, 494, 1022
FatI CATG 9 cut(s) 12, 169, 447, 519, 862, 963, 1015, 1200, 1236
FauI CCCGC 4 cut(s) 37, 118, 149, 1208
FbaI TGATCA 1 cut(s) 9
FblI GTMKAC 1 cut(s) 769
FokI GGATG 3 cut(s) 877, 1367, 1561
FriOI GRGCYC 2 cut(s) 265, 412
FspBI CTAG 1 cut(s) 1663
FspI TGCGCA 1 cut(s) 575
GlaI GCGC 5 cut(s) 297, 360, 368, 421, 575
HaeII RGCGCY 2 cut(s) 299, 423
HaeIII GGCC 5 cut(s) 101, 224, 274, 458, 876
HapII CCGG 6 cut(s) 198, 226, 270, 423, 459, 617
HgaI GACGC 5 cut(s) 21, 169, 197, 362, 1382
HhaI GCGC 5 cut(s) 298, 361, 369, 422, 576
Hin1I GRCGYC 2 cut(s) 189, 420
Hin1II CATG 9 cut(s) 16, 173, 451, 523, 866, 967, 1019, 1204, 1240
Hin6I GCGC 5 cut(s) 296, 359, 367, 420, 574
HinP1I GCGC 5 cut(s) 296, 359, 367, 420, 574
HincII GTYRAC 1 cut(s) 741
HindII GTYRAC 1 cut(s) 741
HindIII AAGCTT 2 cut(s) 381, 1346
HinfI GANTC 6 cut(s) 482, 1125, 1248, 1256, 1528, 1537
HpaII CCGG 6 cut(s) 198, 226, 270, 423, 459, 617
HphI GGTGA 4 cut(s) 480, 731, 1421, 1472
Hpy166II GTNNAC 4 cut(s) 445, 741, 770, 1649
Hpy188I TCNGA 9 cut(s) 234, 241, 312, 402, 757, 1105, 1168, 1398, 1587
Hpy188III TCNNGA 6 cut(s) 13, 387, 908, 1263, 1428, 1541
Hpy8I GTNNAC 4 cut(s) 445, 741, 770, 1649
Hpy99I CGWCG 8 cut(s) 37, 80, 133, 163, 260, 353, 356, 1398
HpyAV CCTTC 8 cut(s) 161, 456, 520, 676, 724, 887, 1356, 1527
HpyCH4III ACNGT 3 cut(s) 761, 812, 1646
HpyF3I CTNAG 8 cut(s) 120, 411, 857, 919, 1077, 1165, 1322, 1652
Hsp92I GRCGYC 2 cut(s) 189, 420
Hsp92II CATG 9 cut(s) 16, 173, 451, 523, 866, 967, 1019, 1204, 1240
HspAI GCGC 5 cut(s) 296, 359, 367, 420, 574
KasI GGCGCC 1 cut(s) 419
KroI GCCGGC 2 cut(s) 422, 616
KroNI GCCGGC 2 cut(s) 424, 618
Ksp22I TGATCA 1 cut(s) 9
LmnI GCTCC 6 cut(s) 129, 260, 344, 402, 826, 910
LweI GCATC 4 cut(s) 571, 674, 899, 1186
MabI ACCWGGT 1 cut(s) 1295
MaeI CTAG 1 cut(s) 1663
MaeIII GTNAC 2 cut(s) 779, 1409
MboII GAAGA 7 cut(s) 485, 557, 744, 1094, 1205, 1257, 1443
MflI RGATCY 6 cut(s) 234, 829, 1141, 1168, 1420, 1659
MhlI GDGCHC 2 cut(s) 265, 412
MluCI AATT 5 cut(s) 338, 711, 1129, 1287, 1547
MluI ACGCGT 1 cut(s) 535
Mly113I GGCGCC 1 cut(s) 420
MlyI GAGTC 3 cut(s) 476, 1257, 1531
MmeI TCCRAC 1 cut(s) 1376
Mph1103I ATGCAT 1 cut(s) 667
MroNI GCCGGC 2 cut(s) 422, 616
MseI TTAA 7 cut(s) 714, 927, 1133, 1151, 1473, 1521, 1605
MslI CAYNNNNRTG 3 cut(s) 493, 1264, 1579
MspA1I CMGCKG 4 cut(s) 220, 872, 1010, 1334
MspCI CTTAAG 1 cut(s) 1604
MspI CCGG 6 cut(s) 198, 226, 270, 423, 459, 617
MspR9I CCNGG 8 cut(s) 199, 226, 227, 271, 708, 765, 825, 1297
Mva1269I GAATGC 3 cut(s) 667, 1184, 1219
MvaI CCWGG 4 cut(s) 708, 765, 825, 1297
MvnI CGCG 2 cut(s) 32, 537
NaeI GCCGGC 2 cut(s) 424, 618
NarI GGCGCC 1 cut(s) 420
NciI CCSGG 4 cut(s) 199, 226, 227, 271
NcoI CCATGG 1 cut(s) 1200
NgoMIV GCCGGC 2 cut(s) 422, 616
NlaIII CATG 9 cut(s) 16, 173, 451, 523, 866, 967, 1019, 1204, 1240
NlaIV GGNNCC 6 cut(s) 262, 346, 421, 1143, 1308, 1422
NmuCI GTSAC 2 cut(s) 779, 1409
NsbI TGCGCA 1 cut(s) 575
NsiI ATGCAT 1 cut(s) 667
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 493
PagI TCATGA 1 cut(s) 12
PciI ACATGT 1 cut(s) 447
PcsI WCGNNNNNNNCGW 2 cut(s) 209, 665
PctI GAATGC 3 cut(s) 667, 1184, 1219
PdiI GCCGGC 2 cut(s) 424, 618
PfeI GAWTC 3 cut(s) 1125, 1256, 1528
PflFI GACNNNGTC 1 cut(s) 1297
PflMI CCANNNNNTGG 1 cut(s) 1060
PleI GAGTC 3 cut(s) 476, 1256, 1531
PluTI GGCGCC 1 cut(s) 423
PpsI GAGTC 3 cut(s) 476, 1256, 1531
PscI ACATGT 1 cut(s) 447
PshBI ATTAAT 2 cut(s) 714, 1473
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 4 cut(s) 706, 763, 823, 1295
PspEI GGTNACC 1 cut(s) 1409
PspGI CCWGG 4 cut(s) 706, 763, 823, 1295
PspN4I GGNNCC 6 cut(s) 262, 346, 421, 1143, 1308, 1422
PspPI GGNCC 3 cut(s) 223, 272, 456
PstI CTGCAG 2 cut(s) 1333, 1339
PstNI CAGNNNCTG 3 cut(s) 824, 1010, 1585
PsuI RGATCY 6 cut(s) 234, 829, 1141, 1168, 1420, 1659
PsyI GACNNNGTC 1 cut(s) 1297
PvuII CAGCTG 3 cut(s) 220, 1010, 1334
RsaI GTAC 5 cut(s) 452, 800, 1119, 1270, 1598
RsaNI GTAC 5 cut(s) 451, 799, 1118, 1269, 1597
RseI CAYNNNNRTG 3 cut(s) 493, 1264, 1579
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 7 cut(s) 714, 927, 1133, 1151, 1473, 1521, 1605
Sau96I GGNCC 3 cut(s) 223, 272, 456
SchI GAGTC 3 cut(s) 476, 1257, 1531
ScrFI CCNGG 8 cut(s) 199, 226, 227, 271, 708, 765, 825, 1297
SduI GDGCHC 2 cut(s) 265, 412
SexAI ACCWGGT 1 cut(s) 1295
SfaNI GCATC 4 cut(s) 571, 674, 899, 1186
SfcI CTRYAG 2 cut(s) 1329, 1335
SfoI GGCGCC 1 cut(s) 421
SmaI CCCGGG 1 cut(s) 227
SmiI ATTTAAAT 1 cut(s) 1134
SmiMI CAYNNNNRTG 3 cut(s) 493, 1264, 1579
SmlI CTYRAG 2 cut(s) 1349, 1604
SmoI CTYRAG 2 cut(s) 1349, 1604
Sse9I AATT 5 cut(s) 338, 711, 1129, 1287, 1547
SspDI GGCGCC 1 cut(s) 419
SspMI CTAG 1 cut(s) 1663
SstI GAGCTC 1 cut(s) 412
StyD4I CCNGG 8 cut(s) 197, 224, 225, 269, 706, 763, 823, 1295
StyI CCWWGG 1 cut(s) 1200
SwaI ATTTAAAT 1 cut(s) 1134
TaaI ACNGT 3 cut(s) 761, 812, 1646
TaqI TCGA 5 cut(s) 165, 336, 1123, 1360, 1531
TasI AATT 5 cut(s) 338, 711, 1129, 1287, 1547
TatI WGTACW 1 cut(s) 450
TauI GCSGC 5 cut(s) 83, 194, 197, 329, 375
TfiI GAWTC 3 cut(s) 1125, 1256, 1528
Tru1I TTAA 7 cut(s) 714, 927, 1133, 1151, 1473, 1521, 1605
Tru9I TTAA 7 cut(s) 714, 927, 1133, 1151, 1473, 1521, 1605
TscAI CASTG 6 cut(s) 645, 817, 1347, 1506, 1586, 1656
TseFI GTSAC 2 cut(s) 779, 1409
Tsp45I GTSAC 2 cut(s) 779, 1409
TspDTI ATGAA 4 cut(s) 639, 1212, 1361, 1521
TspGWI ACGGA 2 cut(s) 273, 1482
TspMI CCCGGG 1 cut(s) 225
TspRI CASTG 6 cut(s) 645, 817, 1347, 1506, 1586, 1656
Tth111I GACNNNGTC 1 cut(s) 1297
Van91I CCANNNNNTGG 1 cut(s) 1060
Vha464I CTTAAG 1 cut(s) 1604
VspI ATTAAT 2 cut(s) 714, 1473
XapI RAATTY 1 cut(s) 1547
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 2 cut(s) 869, 1586
XmaI CCCGGG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 769
XspI CTAG 1 cut(s) 1663
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.