Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

22643925 .. 22644568

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGACTGGAGAAAAAAGGGAGCTGTAACTCCCATCAAGGATCACGGCCAATGTGGAAGTTGTTGGGCATTCTCGGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTAGCTTGTTGACTGTGATGTCAAAGGGACCAAGGCTGTGCAGCCTTATGGATGATGGCTTTCAGTTCGTTATTCAAAATCATGGTATTAATACCGAGGCAAATTATCCCTACACGGCTGCCGATGGTACATGCAGTGCCAAGAAGGAACCAGGCCATGCAGCCACAATAACTGGCCATGAAGATGTGCCTGCAAACAGCGAAAGCGCCCTTCTTAAGGCCGTGACTAATCAACCTATCTCTGTTGCTATTGATGCTAGTGGATCTGACTTCCAGTTCTATTCAAGTGGTGTTTTCACAGGAACATGTGGAACGGGTCTAGACCATGGTGTTACCGCTCAATTATGGCGTCAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

161

Amino Acids

16.96

Weight (kDa)

5.89

Isoelectric Point (pI)

13.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 156	2.1e-41	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	145
AccBSI	CCGCTC	1 cut(s)	464
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	48, 397
AcoI	YGGCCR	2 cut(s)	46, 301
AcyI	GRCGYC	1 cut(s)	475
AfaI	GTAC	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	343
AflII	CTTAAG	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	203, 411
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	3 cut(s)	23, 86, 132
AluI	AGCT	3 cut(s)	23, 86, 132
AlwI	GGATC	2 cut(s)	48, 397
AoxI	GGCC	4 cut(s)	46, 280, 301, 345
ApeKI	GCWGC	3 cut(s)	168, 245, 287
AseI	ATTAAT	1 cut(s)	216
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	155
BalI	TGGCCA	1 cut(s)	303
BbvI	GCAGC	3 cut(s)	180, 232, 299
BccI	CCATC	3 cut(s)	41, 176, 245
BceAI	ACGGC	3 cut(s)	61, 258, 332
BciT130I	CCWGG	1 cut(s)	279
BfaI	CTAG	3 cut(s)	129, 384, 446
BfoI	RGCGCY	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	341
BisI	GCNGC	3 cut(s)	169, 246, 288
BlsI	GCNGC	3 cut(s)	170, 247, 289
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	156, 276
BmrFI	CCNGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	28
BsaHI	GRCGYC	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	158, 222, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse1I	ACTGG	4 cut(s)	11, 118, 304, 400
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	3 cut(s)	158, 222, 451
BseGI	GGATG	1 cut(s)	184
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseNI	ACTGG	4 cut(s)	11, 118, 304, 400
BseXI	GCAGC	3 cut(s)	180, 232, 299
BsgI	GTGCAG	1 cut(s)	187
BshFI	GGCC	4 cut(s)	48, 282, 303, 347
BslFI	GGGAC	1 cut(s)	168
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	168
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	4 cut(s)	48, 282, 303, 347
Bsp143I	GATC	2 cut(s)	40, 389
Bsp19I	CCATGG	1 cut(s)	451
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	4 cut(s)	48, 282, 303, 347
BspLI	GGNNCC	2 cut(s)	156, 276
BspPI	GGATC	2 cut(s)	48, 397
BspTI	CTTAAG	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	464
BsrI	ACTGG	4 cut(s)	11, 118, 304, 400
BssECI	CCNNGG	3 cut(s)	158, 222, 451
BssMI	GATC	2 cut(s)	40, 389
BssNI	GRCGYC	1 cut(s)	475
BssT1I	CCWWGG	2 cut(s)	158, 451
Bst2UI	CCWGG	1 cut(s)	279
Bst4CI	ACNGT	1 cut(s)	142
BstACI	GRCGYC	1 cut(s)	475
BstAFI	CTTAAG	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	318
BstDSI	CCRYGG	1 cut(s)	451
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	184
BstH2I	RGCGCY	1 cut(s)	336
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	2 cut(s)	43, 392
BstMBI	GATC	2 cut(s)	40, 389
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 83, 380
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	2 cut(s)	261, 435
BstSCI	CCNGG	1 cut(s)	277
BstV1I	GCAGC	3 cut(s)	180, 232, 299
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	48, 282, 303, 347
BtgI	CCRYGG	1 cut(s)	451
BtsCI	GGATG	1 cut(s)	184
BtsI	GCAGTG	2 cut(s)	84, 268
BtsIMutI	CAGTG	3 cut(s)	84, 268, 485
Cac8I	GCNNGC	1 cut(s)	318
CfoI	GCGC	1 cut(s)	335
Cfr13I	GGNCC	1 cut(s)	155
CseI	GACGC	1 cut(s)	464
Csp6I	GTAC	1 cut(s)	255
CviAII	CATG	6 cut(s)	209, 258, 284, 305, 432, 452
CviQI	GTAC	1 cut(s)	255
DpnI	GATC	2 cut(s)	42, 391
DpnII	GATC	2 cut(s)	40, 389
DrdI	GACNNNNNNGTC	1 cut(s)	145
DseDI	GACNNNNNNGTC	1 cut(s)	145
EaeI	YGGCCR	2 cut(s)	46, 301
Eco130I	CCWWGG	2 cut(s)	158, 451
Eco47I	GGWCC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	277
EcoT14I	CCWWGG	2 cut(s)	158, 451
ErhI	CCWWGG	2 cut(s)	158, 451
FaeI	CATG	6 cut(s)	212, 261, 287, 308, 435, 455
FaiI	YATR	9 cut(s)	89, 176, 210, 259, 285, 306, 433, 453, 472
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	6 cut(s)	208, 257, 283, 304, 431, 451
Fnu4HI	GCNGC	3 cut(s)	169, 246, 288
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	3 cut(s)	169, 246, 288
FspBI	CTAG	3 cut(s)	129, 384, 446
GlaI	GCGC	1 cut(s)	334
GluI	GCNGC	3 cut(s)	169, 246, 288
GsuI	CTGGAG	1 cut(s)	28
HaeII	RGCGCY	1 cut(s)	336
HaeIII	GGCC	4 cut(s)	48, 282, 303, 347
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	475
Hin1II	CATG	6 cut(s)	212, 261, 287, 308, 435, 455
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	1 cut(s)	96
Hpy166II	GTNNAC	2 cut(s)	119, 138
Hpy188I	TCNGA	1 cut(s)	394
Hpy188III	TCNNGA	1 cut(s)	446
Hpy8I	GTNNAC	2 cut(s)	119, 138
HpyAV	CCTTC	3 cut(s)	86, 265, 347
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4V	TGCA	4 cut(s)	168, 261, 287, 320
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 83, 380
Hsp92I	GRCGYC	1 cut(s)	475
Hsp92II	CATG	6 cut(s)	212, 261, 287, 308, 435, 455
HspAI	GCGC	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	40, 389
LmnI	GCTCC	2 cut(s)	20, 83
LpnPI	CCDG	7 cut(s)	99, 264, 285, 291, 330, 411, 413
Lsp1109I	GCAGC	3 cut(s)	180, 232, 299
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	3 cut(s)	129, 384, 446
MaeIII	GTNAC	3 cut(s)	25, 349, 457
MalI	GATC	2 cut(s)	42, 391
MbiI	CCGCTC	1 cut(s)	464
MboI	GATC	2 cut(s)	40, 389
MboII	GAAGA	1 cut(s)	320
MflI	RGATCY	1 cut(s)	389
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	2 cut(s)	229, 467
MluNI	TGGCCA	1 cut(s)	303
MnlI	CCTC	1 cut(s)	217
Mox20I	TGGCCA	1 cut(s)	303
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	2 cut(s)	216, 342
MslI	CAYNNNNRTG	1 cut(s)	309
Msp20I	TGGCCA	1 cut(s)	303
MspCI	CTTAAG	1 cut(s)	341
MspR9I	CCNGG	1 cut(s)	279
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	74, 83, 380
NcoI	CCATGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	40, 389
NlaIII	CATG	6 cut(s)	212, 261, 287, 308, 435, 455
NlaIV	GGNNCC	2 cut(s)	156, 276
NmeAIII	GCCGAG	1 cut(s)	53
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	261, 435
PciI	ACATGT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	68
PfeI	GAWTC	1 cut(s)	96
PkrI	GCNGC	3 cut(s)	170, 247, 289
PscI	ACATGT	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	156, 276
PspPI	GGNCC	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	1 cut(s)	256
RsaNI	GTAC	1 cut(s)	255
RseI	CAYNNNNRTG	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	216, 342
SatI	GCNGC	3 cut(s)	169, 246, 288
Sau3AI	GATC	2 cut(s)	40, 389
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	279
SetI	ASST	4 cut(s)	25, 88, 134, 364
SfaNI	GCATC	1 cut(s)	370
SinI	GGWCC	1 cut(s)	155
SmiMI	CAYNNNNRTG	1 cut(s)	309
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	229, 467
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	3 cut(s)	129, 384, 446
StyD4I	CCNGG	1 cut(s)	277
StyI	CCWWGG	2 cut(s)	158, 451
TaaI	ACNGT	1 cut(s)	142
TasI	AATT	2 cut(s)	229, 467
TfiI	GAWTC	1 cut(s)	96
Tru1I	TTAA	2 cut(s)	216, 342
Tru9I	TTAA	2 cut(s)	216, 342
TscAI	CASTG	3 cut(s)	84, 268, 485
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	3 cut(s)	168, 245, 287
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	1 cut(s)	321
TspRI	CASTG	3 cut(s)	84, 268, 485
Vha464I	CTTAAG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	155
VspI	ATTAAT	1 cut(s)	216
XagI	CCTNNNNNAGG	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	445
XceI	RCATGY	2 cut(s)	261, 435
XspI	CTAG	3 cut(s)	129, 384, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.