Rorug01G0225000

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
32358506 .. 32358748
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0225000.1

Sequence Viewer

Length: 243 bp
ATGACAAGCGTCACCAGAGCAAAAGTGGAGTCGCTGAAATCGTTCAAGAGATGGGGCAGCCGGGCAGGACTGCAGGAGGCACTCGTTCAGCCGGTACGGACTTCCGATGATCTTCCCCACCGTGTTCGGCGCCATCAGCCTCGACCATCTCATCCTAGGCAGCAAAGATATCGCCAATTTCAAAGACGACCAGGAATGGGAGATCGTCGAGACCCGGAAAGCTTTTTCCAGAACTTCCGATAA

Protein Analysis

80

Amino Acids

9.63

Weight (kDa)

11.9

Isoelectric Point (pI)

69.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 129
AcyI GRCGYC 1 cut(s) 130
AfaI GTAC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 46, 182
AjnI CCWGG 1 cut(s) 190
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 57, 160
ArsI GACNNNNNNTTYG 2 cut(s) 14, 46
Asp700I GAANNNNTTC 1 cut(s) 41
AspA2I CCTAGG 1 cut(s) 155
AspLEI GCGC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 62, 215
AsuHPI GGTGA 1 cut(s) 4
AvrII CCTAGG 1 cut(s) 155
BanI GGYRCC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 69, 172
BccI CCATC 3 cut(s) 45, 141, 154
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BciT130I CCWGG 1 cut(s) 192
BcnI CCSGG 2 cut(s) 62, 215
BcoDI GTCTC 1 cut(s) 204
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 133
BisI GCNGC 2 cut(s) 58, 161
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 2 cut(s) 59, 162
Bme1390I CCNGG 3 cut(s) 62, 192, 215
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 3 cut(s) 62, 192, 215
BoxI GACNNNNGTC 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 62, 215
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 91
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 155
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 197
BseXI GCAGC 2 cut(s) 69, 172
BshNI GGYRCC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 61, 92, 215
BslI CCNNNNNNNGG 1 cut(s) 197
BsmAI GTCTC 1 cut(s) 204
Bso31I GGTCTC 1 cut(s) 204
Bsp143I GATC 2 cut(s) 109, 202
BspLI GGNNCC 1 cut(s) 131
BspMAI CTGCAG 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 2 cut(s) 109, 202
BssNI GRCGYC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 192
Bst4CI ACNGT 1 cut(s) 122
BstACI GRCGYC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 133
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 2 cut(s) 112, 205
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 109, 202
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 192
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 3 cut(s) 60, 190, 213
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 69, 172
BtsCI GGATG 1 cut(s) 151
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 1 cut(s) 91
Csp6I GTAC 1 cut(s) 95
CviJI RGCY 4 cut(s) 60, 91, 139, 222
CviKI_1 RGCY 4 cut(s) 60, 91, 139, 222
CviQI GTAC 1 cut(s) 95
DinI GGCGCC 1 cut(s) 131
DpnI GATC 2 cut(s) 111, 204
DpnII GATC 2 cut(s) 109, 202
Eco130I CCWWGG 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 204
Eco32I GATATC 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 190
EcoRV GATATC 1 cut(s) 170
EcoT14I CCWWGG 1 cut(s) 155
EgeI GGCGCC 1 cut(s) 131
EheI GGCGCC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 58, 161
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 58, 161
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 131
GluI GCNGC 2 cut(s) 58, 161
HaeII RGCGCY 1 cut(s) 133
HapII CCGG 3 cut(s) 61, 92, 215
HhaI GCGC 1 cut(s) 132
Hin1I GRCGYC 1 cut(s) 130
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 220
HinfI GANTC 1 cut(s) 29
HpaII CCGG 3 cut(s) 61, 92, 215
HphI GGTGA 1 cut(s) 4
Hpy188I TCNGA 2 cut(s) 106, 239
Hpy188III TCNNGA 3 cut(s) 46, 209, 229
Hpy99I CGWCG 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
Hsp92I GRCGYC 1 cut(s) 130
HspAI GCGC 1 cut(s) 130
KasI GGCGCC 1 cut(s) 129
Kzo9I GATC 2 cut(s) 109, 202
LpnPI CCDG 8 cut(s) 28, 51, 59, 74, 105, 177, 204, 228
Lsp1109I GCAGC 2 cut(s) 69, 172
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 10
MalI GATC 2 cut(s) 111, 204
MboI GATC 2 cut(s) 109, 202
MboII GAAGA 1 cut(s) 104
MluCI AATT 1 cut(s) 176
Mly113I GGCGCC 1 cut(s) 130
MlyI GAGTC 1 cut(s) 38
MnlI CCTC 2 cut(s) 70, 150
MroXI GAANNNNTTC 1 cut(s) 41
MspI CCGG 3 cut(s) 61, 92, 215
MspR9I CCNGG 3 cut(s) 62, 192, 215
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 136
NarI GGCGCC 1 cut(s) 130
NciI CCSGG 2 cut(s) 62, 215
NdeII GATC 2 cut(s) 109, 202
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 41
PkrI GCNGC 2 cut(s) 59, 162
PleI GAGTC 1 cut(s) 37
PluTI GGCGCC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 37
PshAI GACNNNNGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 1 cut(s) 96
RsaNI GTAC 1 cut(s) 95
SatI GCNGC 2 cut(s) 58, 161
Sau3AI GATC 2 cut(s) 109, 202
SchI GAGTC 1 cut(s) 38
ScrFI CCNGG 3 cut(s) 62, 192, 215
SetI ASST 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 71
SfoI GGCGCC 1 cut(s) 131
Sse9I AATT 1 cut(s) 176
SspDI GGCGCC 1 cut(s) 129
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 3 cut(s) 60, 190, 213
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 2 cut(s) 142, 208
TasI AATT 1 cut(s) 176
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 2 cut(s) 57, 160
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 1 cut(s) 112
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XmaJI CCTAGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.