RchiOBHm_Chr2g0143171

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
60869451 .. 60869804
354 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51327

Sequence Viewer

Length: 354 bp
ATGGCTCGTTATGGACGTTTCTATGAAGAGATCAATGAGAAGGAGAGGCGCTTCCAAATATTTAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAGATGAAGAATTCATTGCTTTGAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGACCACTTCTTTCAAGTATGAAAACGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGAAACCCCAATCAGACCAAGGCCAATGTGGTACGTAATTAAGCATCTAGCTAGCTCATTGTTATTTATAATTTATAGATGA

Protein Analysis

117

Amino Acids

13.91

Weight (kDa)

9.27

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 1 - 54 6.6e-18 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 341
AclI AACGTT 1 cut(s) 231
AcsI RAATTY 1 cut(s) 158
AfaI GTAC 1 cut(s) 305
AgsI TTSAA 2 cut(s) 184, 220
AluBI AGCT 4 cut(s) 245, 272, 323, 327
AluI AGCT 4 cut(s) 245, 272, 323, 327
Alw26I GTCTC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 248
AoxI GGCC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 1 cut(s) 51
AsuNHI GCTAGC 1 cut(s) 323
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 2 cut(s) 320, 324
BfoI RGCGCY 1 cut(s) 52
BmsI GCATC 2 cut(s) 91, 325
BmtI GCTAGC 1 cut(s) 327
BpmI CTGGAG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 178
BsaAI YACGTR 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 290
Bse1I ACTGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 290
BseGI GGATG 1 cut(s) 89
BseMI GCAATG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 260
BshFI GGCC 1 cut(s) 295
BshVI ATCGAT 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 1 cut(s) 30
BspANI GGCC 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 327
BsrDI GCAATG 1 cut(s) 162
BsrI ACTGG 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 290
BssMI GATC 1 cut(s) 30
BssT1I CCWWGG 1 cut(s) 290
Bst4CI ACNGT 2 cut(s) 238, 250
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 307
BstC8I GCNNGC 3 cut(s) 106, 243, 325
BstF5I GGATG 1 cut(s) 89
BstH2I RGCGCY 1 cut(s) 52
BstHHI GCGC 1 cut(s) 51
BstKTI GATC 1 cut(s) 33
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 178
BsuRI GGCC 1 cut(s) 295
BsuTUI ATCGAT 1 cut(s) 178
BtsCI GGATG 1 cut(s) 89
Cac8I GCNNGC 3 cut(s) 106, 243, 325
CaiI CAGNNNCTG 1 cut(s) 248
CfoI GCGC 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 178
Csp6I GTAC 1 cut(s) 304
CviAII CATG 1 cut(s) 191
CviJI RGCY 6 cut(s) 5, 245, 272, 295, 323, 327
CviKI_1 RGCY 6 cut(s) 5, 245, 272, 295, 323, 327
CviQI GTAC 1 cut(s) 304
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco105I TACGTA 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 290
EcoRI GAATTC 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 290
ErhI CCWWGG 1 cut(s) 290
FaeI CATG 1 cut(s) 194
FaiI YATR 6 cut(s) 12, 24, 192, 225, 341, 348
FalI AAGNNNNNCTT 2 cut(s) 97, 129
FatI CATG 1 cut(s) 190
FokI GGATG 1 cut(s) 76
FspBI CTAG 2 cut(s) 320, 324
GlaI GCGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 277
HaeII RGCGCY 1 cut(s) 52
HaeIII GGCC 1 cut(s) 295
HhaI GCGC 1 cut(s) 51
Hin1II CATG 1 cut(s) 194
Hin6I GCGC 1 cut(s) 49
HinP1I GCGC 1 cut(s) 49
HinfI GANTC 2 cut(s) 86, 180
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 238, 250
HpyCH4IV ACGT 3 cut(s) 16, 231, 306
HpyCH4V TGCA 2 cut(s) 104, 140
HpySE526I ACGT 3 cut(s) 16, 231, 306
Hsp92II CATG 1 cut(s) 194
HspAI GCGC 1 cut(s) 49
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 2 cut(s) 241, 255
LweI GCATC 2 cut(s) 91, 325
MaeI CTAG 2 cut(s) 320, 324
MaeII ACGT 3 cut(s) 16, 231, 306
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 32
MboI GATC 1 cut(s) 30
MboII GAAGA 2 cut(s) 38, 167
MluCI AATT 5 cut(s) 119, 134, 158, 309, 342
MmeI TCCRAC 1 cut(s) 117
MnlI CCTC 1 cut(s) 39
MseI TTAA 3 cut(s) 63, 122, 312
NdeII GATC 1 cut(s) 30
NheI GCTAGC 1 cut(s) 323
NlaIII CATG 1 cut(s) 194
PcsI WCGNNNNNNNCGW 1 cut(s) 13
PfeI GAWTC 2 cut(s) 86, 180
Ppu21I YACGTR 1 cut(s) 307
PsiI TTATAA 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 231
PstNI CAGNNNCTG 1 cut(s) 248
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 63, 122, 312
Sau3AI GATC 1 cut(s) 30
SetI ASST 9 cut(s) 19, 115, 147, 234, 247, 274, 309, 325, 329
SfaNI GCATC 2 cut(s) 91, 325
SnaBI TACGTA 1 cut(s) 307
Sse9I AATT 5 cut(s) 119, 134, 158, 309, 342
SspI AATATT 1 cut(s) 60
SspMI CTAG 2 cut(s) 320, 324
StyI CCWWGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 238, 250
TaiI ACGT 3 cut(s) 19, 234, 309
TaqI TCGA 1 cut(s) 178
TasI AATT 5 cut(s) 119, 134, 158, 309, 342
TfiI GAWTC 2 cut(s) 86, 180
Tru1I TTAA 3 cut(s) 63, 122, 312
Tru9I TTAA 3 cut(s) 63, 122, 312
TspDTI ATGAA 5 cut(s) 39, 151, 168, 207, 240
XapI RAATTY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 2 cut(s) 320, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.