Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

43470138 .. 43472174

Gene Structure 2037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G021930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAAGGAGGGCATCCGTTGCCTGGAAAGAGGAAAATACGAGATACTCGTTACGGACGCGTATACAGTGACACTGATGAGAAGCAGAAGCGCTTCAAGATATTCAAGGAAAATGTAGCATTTATAGAATCTTGCAATGACGAAGCAAACAAACCTTACAAACTAAGTGTGAATGGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTTAAGGCTCATGAATGCTCCACAAAGACCACTTCTTTCAAATATGAAAATGCTACTGTGCCAGCAACAATGGACTGGAGACGGAAAGGAGCTGTTACCCCAATCAAGGACCAAGGCCAATGTGACCAAGGCTGTGACGGTGGCCTCATGGATGATGCCTTTCAGTTTATCAATCAAAACCACGGACTAAGTACCGAGGCCAATTATCCCTACACAGGTGTTGATGATGTGCCTGCAAACAGTGAAAGCGCCCTACTTAATGCTGTTGCTAATCAACCTATTTCTGTTGCCATTGATGCCAGCGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACATGCGGAACGAGCCTGGGCCATGGTGTTACCGCTGTTGGTTATGGTGTCAGCGATGATGGGACTAAGTATTGGCTGGTGAAGAACTCATGGGGAGCAGAATGGGGTGAACAAGGGTACATAAGAATGCAAAGAGATATCGCGTTTTGCGCCTCTTCGCCTAACCAGCAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

247

Amino Acids

27.22

Weight (kDa)

5.62

Isoelectric Point (pI)

21.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	17 - 68	5.4e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	116 - 149	4.6e-08	Papain family cysteine protease
Peptidase_C1	PF00112	147 - 239	8.3e-32	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	63
AccII	CGCG	2 cut(s)	60, 710
AciI	CCGC	3 cut(s)	525, 573, 600
AclWI	GGATC	1 cut(s)	535
AfaI	GTAC	2 cut(s)	415, 686
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	3 cut(s)	23, 328, 437
AflIII	ACRYGT	1 cut(s)	58
AgsI	TTSAA	4 cut(s)	97, 106, 262, 549
AjnI	CCWGG	2 cut(s)	22, 582
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	535
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	4 cut(s)	337, 364, 420, 586
Asp700I	GAANNNNTTC	1 cut(s)	92
AspLEI	GCGC	3 cut(s)	93, 473, 719
AspS9I	GGNCC	2 cut(s)	331, 586
AsuHPI	GGTGA	2 cut(s)	658, 686
AvaII	GGWCC	1 cut(s)	331
BccI	CCATC	1 cut(s)	620
BciT130I	CCWGG	2 cut(s)	24, 584
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	2 cut(s)	94, 474
Bme1390I	CCNGG	2 cut(s)	24, 584
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	2 cut(s)	331, 586
BmrFI	CCNGG	2 cut(s)	24, 584
BmsI	GCATC	3 cut(s)	22, 367, 508
BpmI	CTGGAG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	196
Bsa29I	ATCGAT	1 cut(s)	220
BsaJI	CCNNGG	6 cut(s)	334, 349, 403, 417, 583, 589
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 328, 437
Bse1I	ACTGG	1 cut(s)	302
Bse3DI	GCAATG	1 cut(s)	142
BseBI	CCWGG	2 cut(s)	24, 584
BseCI	ATCGAT	1 cut(s)	220
BseDI	CCNNGG	6 cut(s)	334, 349, 403, 417, 583, 589
BseGI	GGATG	2 cut(s)	13, 379
BseLI	CCNNNNNNNGG	3 cut(s)	23, 328, 437
BseMI	GCAATG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	302
Bsh1236I	CGCG	2 cut(s)	60, 710
BshFI	GGCC	4 cut(s)	339, 366, 422, 588
BshVI	ATCGAT	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	643
BslI	CCNNNNNNNGG	3 cut(s)	23, 328, 437
BsmAI	GTCTC	1 cut(s)	295
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	643
BsmI	GAATGC	2 cut(s)	242, 699
BsnI	GGCC	4 cut(s)	339, 366, 422, 588
Bsp143I	GATC	1 cut(s)	527
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	3 cut(s)	525, 573, 600
BspANI	GGCC	4 cut(s)	339, 366, 422, 588
BspDI	ATCGAT	1 cut(s)	220
BspFNI	CGCG	2 cut(s)	60, 710
BspHI	TCATGA	1 cut(s)	232
BspPI	GGATC	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	6 cut(s)	334, 349, 403, 417, 583, 589
BssMI	GATC	1 cut(s)	527
BssNAI	GTATAC	1 cut(s)	64
BssT1I	CCWWGG	3 cut(s)	334, 349, 589
Bst1107I	GTATAC	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	24, 584
Bst4CI	ACNGT	4 cut(s)	68, 280, 362, 464
Bst6I	CTCTTC	2 cut(s)	192, 727
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstC8I	GCNNGC	3 cut(s)	285, 456, 523
BstDEI	CTNAG	3 cut(s)	164, 410, 633
BstDSI	CCRYGG	2 cut(s)	403, 589
BstF5I	GGATG	2 cut(s)	13, 379
BstFNI	CGCG	2 cut(s)	60, 710
BstH2I	RGCGCY	2 cut(s)	94, 474
BstHHI	GCGC	3 cut(s)	93, 473, 719
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 19, 518, 579, 716, 733
BstNI	CCWGG	2 cut(s)	24, 584
BstNSI	RCATGY	1 cut(s)	573
BstSCI	CCNGG	2 cut(s)	22, 582
BstUI	CGCG	2 cut(s)	60, 710
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BstZ17I	GTATAC	1 cut(s)	64
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	339, 366, 422, 588
BsuTUI	ATCGAT	1 cut(s)	220
BtgI	CCRYGG	2 cut(s)	403, 589
BtgZI	GCGATG	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	13, 379
BtsIMutI	CAGTG	3 cut(s)	72, 73, 469
Cac8I	GCNNGC	3 cut(s)	285, 456, 523
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	3 cut(s)	93, 473, 719
Cfr13I	GGNCC	2 cut(s)	331, 586
ClaI	ATCGAT	1 cut(s)	220
CseI	GACGC	1 cut(s)	66
Csp6I	GTAC	2 cut(s)	414, 685
CviAII	CATG	5 cut(s)	233, 370, 570, 590, 657
CviQI	GTAC	2 cut(s)	414, 685
DdeI	CTNAG	3 cut(s)	164, 410, 633
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
Eam1104I	CTCTTC	2 cut(s)	192, 727
EarI	CTCTTC	2 cut(s)	192, 727
Eco130I	CCWWGG	3 cut(s)	334, 349, 589
Eco32I	GATATC	1 cut(s)	706
Eco47I	GGWCC	1 cut(s)	331
Eco47III	AGCGCT	1 cut(s)	92
EcoRII	CCWGG	2 cut(s)	22, 582
EcoRV	GATATC	1 cut(s)	706
EcoT14I	CCWWGG	3 cut(s)	334, 349, 589
ErhI	CCWWGG	3 cut(s)	334, 349, 589
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	5 cut(s)	236, 373, 573, 593, 660
FaqI	GGGAC	1 cut(s)	643
FatI	CATG	5 cut(s)	232, 369, 569, 589, 656
FblI	GTMKAC	1 cut(s)	63
FokI	GGATG	1 cut(s)	386
GlaI	GCGC	3 cut(s)	92, 472, 718
GsuI	CTGGAG	1 cut(s)	319
HaeII	RGCGCY	2 cut(s)	94, 474
HaeIII	GGCC	4 cut(s)	339, 366, 422, 588
HgaI	GACGC	1 cut(s)	66
HhaI	GCGC	3 cut(s)	93, 473, 719
Hin1II	CATG	5 cut(s)	236, 373, 573, 593, 660
Hin6I	GCGC	3 cut(s)	91, 471, 717
HinP1I	GCGC	3 cut(s)	91, 471, 717
HinfI	GANTC	1 cut(s)	128
HphI	GGTGA	2 cut(s)	658, 686
Hpy166II	GTNNAC	3 cut(s)	64, 204, 677
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	3 cut(s)	97, 213, 233
Hpy8I	GTNNAC	3 cut(s)	64, 204, 677
HpyCH4III	ACNGT	4 cut(s)	68, 280, 362, 464
HpyCH4V	TGCA	5 cut(s)	4, 135, 182, 458, 697
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 19, 518, 579, 716, 733
HpyF3I	CTNAG	3 cut(s)	164, 410, 633
Hsp92II	CATG	5 cut(s)	236, 373, 573, 593, 660
HspAI	GCGC	3 cut(s)	91, 471, 717
Kzo9I	GATC	1 cut(s)	527
LmnI	GCTCC	3 cut(s)	245, 311, 662
LweI	GCATC	3 cut(s)	22, 367, 508
MaeIII	GTNAC	6 cut(s)	50, 68, 316, 344, 356, 595
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	3 cut(s)	209, 661, 714
MflI	RGATCY	1 cut(s)	527
MluCI	AATT	2 cut(s)	424, 539
MluI	ACGCGT	1 cut(s)	58
MnlI	CCTC	5 cut(s)	24, 220, 377, 412, 730
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	225, 480
MslI	CAYNNNNRTG	1 cut(s)	692
MspA1I	CMGCKG	2 cut(s)	525, 602
MspR9I	CCNGG	2 cut(s)	24, 584
Mva1269I	GAATGC	2 cut(s)	242, 699
MvaI	CCWGG	2 cut(s)	24, 584
MvnI	CGCG	2 cut(s)	60, 710
MwoI	GCNNNNNNNGC	6 cut(s)	10, 19, 518, 579, 716, 733
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	236, 373, 573, 593, 660
NmuCI	GTSAC	3 cut(s)	68, 344, 356
NspI	RCATGY	1 cut(s)	573
PagI	TCATGA	1 cut(s)	232
PcsI	WCGNNNNNNNCGW	1 cut(s)	46
PctI	GAATGC	2 cut(s)	242, 699
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	128
Psp6I	CCWGG	2 cut(s)	22, 582
PspGI	CCWGG	2 cut(s)	22, 582
PspPI	GGNCC	2 cut(s)	331, 586
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	2 cut(s)	415, 686
RsaNI	GTAC	2 cut(s)	414, 685
RseI	CAYNNNNRTG	1 cut(s)	692
SaqAI	TTAA	2 cut(s)	225, 480
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	2 cut(s)	331, 586
ScrFI	CCNGG	2 cut(s)	24, 584
SetI	ASST	5 cut(s)	157, 189, 316, 442, 502
SfaNI	GCATC	3 cut(s)	22, 367, 508
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	211
SmoI	CTYRAG	1 cut(s)	211
Sse9I	AATT	2 cut(s)	424, 539
SsiI	CCGC	3 cut(s)	525, 573, 600
StyD4I	CCNGG	2 cut(s)	22, 582
StyI	CCWWGG	3 cut(s)	334, 349, 589
TaaI	ACNGT	4 cut(s)	68, 280, 362, 464
TaqI	TCGA	1 cut(s)	220
TasI	AATT	2 cut(s)	424, 539
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	2 cut(s)	225, 480
Tru9I	TTAA	2 cut(s)	225, 480
TscAI	CASTG	3 cut(s)	73, 79, 469
TseFI	GTSAC	3 cut(s)	68, 344, 356
Tsp45I	GTSAC	3 cut(s)	68, 344, 356
TspDTI	ATGAA	3 cut(s)	210, 249, 282
TspGWI	ACGGA	4 cut(s)	6, 69, 319, 420
TspRI	CASTG	3 cut(s)	73, 79, 469
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	1 cut(s)	573
XmiI	GTMKAC	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.