Rh3BG081900

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
6410338 .. 6419321
8984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG081900.1

Sequence Viewer

Length: 711 bp
ATGGAGTTCACCAACCAGAGCAAATGTATCTGCTTGGCCTTGGTCCTCATGTTGGGGGCATGGTCTTCGGAAGCCACTTCTCGTAGTCTCCAAGATGCATTAGCTTATGGAAGGTATGAGCAATGGATAGCTCGTTATGGCCGTGTATATAATGATATCAAGGAGAAGGAGGACCGCTTCAAGATATTCAAGGAGAATGAGGCATTCATAGAATCTTCCAACAACAATGGAAACAAAATTTACAAATTGAGTCTGAACCAATTTGCAGACCTTACAAATGAAGAGTTCACTGCCTCAAGAAATCGATTCAAGGCGCATGAATGTTCCACAAAGACGAAGACCACTACTTTTAAATATGAAAATGCTACTGTGCCAACTACAATGGACTGGAGAAAGAAGGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCGGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTTGTAGACTGTGATGTCAAAGGTGTAGACCAAGGCTGTGCAGGTGGCCTTATGGACGATGCCTTTCAGTTCGTTATTCAAAATCATGGTATTAATACCGAGGCTAATTATCCCTACACTGCTGCGGATGGTACATGCAATGCCAAGAAGGAAGCAGGCTATTGCAATTTTATCCATACAACTTGA

Protein Analysis

236

Amino Acids

26.36

Weight (kDa)

5.72

Isoelectric Point (pI)

17.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 39 - 96 1.3e-17 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 124 - 227 1.6e-42 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 557
AasI GACNNNNNNGTC 1 cut(s) 539
Acc36I ACCTGC 1 cut(s) 557
AccI GTMKAC 2 cut(s) 531, 552
AciI CCGC 2 cut(s) 175, 650
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 237
AfaI GTAC 1 cut(s) 658
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 181, 190, 310, 605
AluBI AGCT 5 cut(s) 104, 131, 404, 467, 526
AluI AGCT 5 cut(s) 104, 131, 404, 467, 526
Alw26I GTCTC 1 cut(s) 92
AoxI GGCC 4 cut(s) 36, 139, 427, 571
ApeKI GCWGC 1 cut(s) 647
ApoI RAATTY 1 cut(s) 237
AseI ATTAAT 1 cut(s) 618
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 43, 172, 421
AvaII GGWCC 3 cut(s) 43, 172, 421
BbsI GAAGAC 2 cut(s) 57, 344
BbvI GCAGC 1 cut(s) 634
BccI CCATC 2 cut(s) 422, 647
BceAI ACGGC 1 cut(s) 126
BcgI CGANNNNNNTGC 2 cut(s) 48, 82
BcoDI GTCTC 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 557
BisI GCNGC 1 cut(s) 648
BlsI GCNGC 1 cut(s) 649
Bme18I GGWCC 3 cut(s) 43, 172, 421
BmgT120I GGNCC 3 cut(s) 43, 172, 421
BmsI GCATC 2 cut(s) 85, 574
BpiI GAAGAC 2 cut(s) 57, 344
BpmI CTGGAG 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 280
Bsa29I ATCGAT 1 cut(s) 304
BsaJI CCNNGG 4 cut(s) 39, 424, 556, 624
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 2 cut(s) 392, 499
Bse3DI GCAATG 2 cut(s) 128, 670
BseCI ATCGAT 1 cut(s) 304
BseDI CCNNGG 4 cut(s) 39, 424, 556, 624
BseGI GGATG 1 cut(s) 658
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 128, 670
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 392, 499
BseXI GCAGC 1 cut(s) 634
BsgI GTGCAG 1 cut(s) 585
BshFI GGCC 4 cut(s) 38, 141, 429, 573
BshVI ATCGAT 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 92
BsmI GAATGC 2 cut(s) 203, 449
BsnI GGCC 4 cut(s) 38, 141, 429, 573
BspACI CCGC 2 cut(s) 175, 650
BspANI GGCC 4 cut(s) 38, 141, 429, 573
BspCNI CTCAG 1 cut(s) 508
BspDI ATCGAT 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 557
BsrDI GCAATG 2 cut(s) 128, 670
BsrI ACTGG 2 cut(s) 392, 499
BssECI CCNNGG 4 cut(s) 39, 424, 556, 624
BssT1I CCWWGG 3 cut(s) 39, 424, 556
Bst4CI ACNGT 2 cut(s) 370, 536
Bst6I CTCTTC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 682
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 1 cut(s) 658
BstHHI GCGC 1 cut(s) 316
BstMAI GTCTC 1 cut(s) 92
BstMWI GCNNNNNNNGC 2 cut(s) 455, 464
BstNSI RCATGY 1 cut(s) 663
BstV1I GCAGC 1 cut(s) 634
BstV2I GAAGAC 2 cut(s) 57, 344
Bsu15I ATCGAT 1 cut(s) 304
BsuRI GGCC 4 cut(s) 38, 141, 429, 573
BsuTUI ATCGAT 1 cut(s) 304
BtsCI GGATG 1 cut(s) 658
BtsI GCAGTG 3 cut(s) 288, 465, 642
BtsIMutI CAGTG 3 cut(s) 288, 465, 642
BveI ACCTGC 1 cut(s) 557
Cac8I GCNNGC 1 cut(s) 682
CfoI GCGC 1 cut(s) 316
Cfr13I GGNCC 3 cut(s) 43, 172, 421
ClaI ATCGAT 1 cut(s) 304
Csp6I GTAC 1 cut(s) 657
CviAII CATG 5 cut(s) 49, 60, 317, 611, 660
CviQI GTAC 1 cut(s) 657
DdeI CTNAG 1 cut(s) 516
DraI TTTAAA 1 cut(s) 352
DrdI GACNNNNNNGTC 1 cut(s) 539
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
Eco130I CCWWGG 3 cut(s) 39, 424, 556
Eco32I GATATC 1 cut(s) 157
Eco47I GGWCC 3 cut(s) 43, 172, 421
EcoRV GATATC 1 cut(s) 157
EcoT14I CCWWGG 3 cut(s) 39, 424, 556
EcoT22I ATGCAT 1 cut(s) 100
ErhI CCWWGG 3 cut(s) 39, 424, 556
FaeI CATG 5 cut(s) 52, 63, 320, 614, 663
FatI CATG 5 cut(s) 48, 59, 316, 610, 659
FblI GTMKAC 2 cut(s) 531, 552
Fnu4HI GCNGC 1 cut(s) 648
FokI GGATG 1 cut(s) 665
Fsp4HI GCNGC 1 cut(s) 648
GlaI GCGC 1 cut(s) 315
GluI GCNGC 1 cut(s) 648
GsuI CTGGAG 1 cut(s) 409
HaeIII GGCC 4 cut(s) 38, 141, 429, 573
HhaI GCGC 1 cut(s) 316
Hin1II CATG 5 cut(s) 52, 63, 320, 614, 663
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 4 cut(s) 212, 250, 306, 477
Hpy166II GTNNAC 5 cut(s) 9, 288, 500, 532, 553
Hpy188I TCNGA 3 cut(s) 70, 255, 517
Hpy188III TCNNGA 2 cut(s) 181, 297
Hpy8I GTNNAC 5 cut(s) 9, 288, 500, 532, 553
HpyAV CCTTC 5 cut(s) 105, 160, 391, 467, 667
HpyCH4III ACNGT 2 cut(s) 370, 536
HpyCH4V TGCA 5 cut(s) 98, 266, 566, 663, 690
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 464
HpyF3I CTNAG 1 cut(s) 516
Hsp92II CATG 5 cut(s) 52, 63, 320, 614, 663
HspAI GCGC 1 cut(s) 314
LmnI GCTCC 2 cut(s) 401, 464
LpnPI CCDG 5 cut(s) 29, 373, 480, 552, 666
Lsp1109I GCAGC 1 cut(s) 634
LweI GCATC 2 cut(s) 85, 574
MaeIII GTNAC 1 cut(s) 406
MboII GAAGA 4 cut(s) 57, 207, 293, 349
MluCI AATT 5 cut(s) 237, 245, 260, 631, 691
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 243
MnlI CCTC 5 cut(s) 56, 163, 193, 304, 619
Mph1103I ATGCAT 1 cut(s) 100
MseI TTAA 2 cut(s) 351, 618
Mva1269I GAATGC 2 cut(s) 203, 449
MwoI GCNNNNNNNGC 2 cut(s) 455, 464
NlaIII CATG 5 cut(s) 52, 63, 320, 614, 663
NmeAIII GCCGAG 1 cut(s) 434
NsiI ATGCAT 1 cut(s) 100
NspI RCATGY 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 139
PctI GAATGC 2 cut(s) 203, 449
PfeI GAWTC 3 cut(s) 212, 306, 477
PkrI GCNGC 1 cut(s) 649
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PshBI ATTAAT 1 cut(s) 618
PspPI GGNCC 3 cut(s) 43, 172, 421
RsaI GTAC 1 cut(s) 658
RsaNI GTAC 1 cut(s) 657
SaqAI TTAA 2 cut(s) 351, 618
SatI GCNGC 1 cut(s) 648
Sau96I GGNCC 3 cut(s) 43, 172, 421
SchI GAGTC 1 cut(s) 259
SetI ASST 9 cut(s) 106, 116, 133, 273, 406, 469, 528, 550, 571
SfaNI GCATC 2 cut(s) 85, 574
SinI GGWCC 3 cut(s) 43, 172, 421
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 5 cut(s) 237, 245, 260, 631, 691
SsiI CCGC 2 cut(s) 175, 650
StyI CCWWGG 3 cut(s) 39, 424, 556
TaaI ACNGT 2 cut(s) 370, 536
TaqI TCGA 1 cut(s) 304
TasI AATT 5 cut(s) 237, 245, 260, 631, 691
TfiI GAWTC 3 cut(s) 212, 306, 477
Tru1I TTAA 2 cut(s) 351, 618
Tru9I TTAA 2 cut(s) 351, 618
TscAI CASTG 3 cut(s) 295, 465, 649
TseI GCWGC 1 cut(s) 647
TspDTI ATGAA 4 cut(s) 196, 294, 333, 372
TspRI CASTG 3 cut(s) 295, 465, 649
VpaK11BI GGWCC 3 cut(s) 43, 172, 421
VspI ATTAAT 1 cut(s) 618
XapI RAATTY 1 cut(s) 237
XceI RCATGY 1 cut(s) 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmiI GTMKAC 2 cut(s) 531, 552
Zsp2I ATGCAT 1 cut(s) 100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.