MD09G1238600.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
30347873 .. 30349041
1169 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1238600.v1.1.491

Sequence Viewer

Length: 939 bp
ATGGAGTTCCTTAACATGAAGCTGTGGAAATATATGTGCCTTAGCTTGATCCTCACCTTGGGGGCTTGGTCTTCTGAAGCCACTTCTCGTACTCTGCAAGATGCATCTATGTATGGGAGATACGAGCAATGGTTGATTCGTTATGGTTGCGTATATAATGACATTAATGAGAAGGAAACTCCTTTCAAGATATTCAAGGAGAGTTTTGCAGACCTTACAAATGAAGAGTTCAAAGCCTCAAGAAATGGATTCAACGGACATGAGTGCTCCACGAAGACAACTTGTTTCAAGTATGAAAATGTGACTGCATCATTACCAGCAACAATGGACTGGAGAGAGAAAGGAGCAGTAACCCCCATCAAGGACCAAGGCCAATGCGGTAGCTGTTGGGCCTTTTCAGCAGTGGCCGCCACTGAAGGAATAACACAGCTTACAACTGGGAAATTGATCTCTTTGTCTGAGCAAGAGCTTGTTGATTGTGATACCGCTGGTGAAGACCAGGGATGTGAGGGTGGCTTGATGGACGACGCCTTCCAGTTCATCCAAAAAAATCACGGGATTAGCACAGAAGCTAATTACCCCTACAACGGCGTTGAAGGTACATGTAACACCAAGAAGGAAGCAAGCCATGCAGCCAAGATAACTGGCTTGAAGATGTCCCTGCAAACATTCTATTCAAGTGGTGTCTTTACCGGAACTTGTGGAACGAGCCTTGACCATGGTGTTACCGCTGTTGGTTATGGCCTGAGTGAGGATGGGACTAAGTATTGGTTAGTGAAGAACTCATGGGGTGCAGAATGGGATGAAGAGGGGTACATTAGGATGCAAAGAGATGTTGCAGCAGCCGAAGGACTTTGTGGAATTGCTGTCTGCATCTTACCCCACAGTCTGCCGCATACAGACCTACGCCACACTTTCCTACATGGCAATCACTTTTAA

Protein Analysis

313

Amino Acids

34.56

Weight (kDa)

5.15

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C1 PF00112 105 - 218 1.8e-43 Papain family cysteine protease
Peptidase_C1 PF00112 223 - 289 6.4e-21 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 378, 408, 486, 729, 893
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 405
AcuI CTGAAG 2 cut(s) 96, 435
AcyI GRCGYC 1 cut(s) 528
AfaI GTAC 3 cut(s) 91, 601, 815
AfiI CCNNNNNNNGG 4 cut(s) 58, 361, 587, 751
AflIII ACRYGT 1 cut(s) 602
AgsI TTSAA 8 cut(s) 187, 196, 232, 253, 289, 596, 652, 678
AjnI CCWGG 1 cut(s) 498
AluBI AGCT 6 cut(s) 22, 45, 384, 430, 469, 572
AluI AGCT 6 cut(s) 22, 45, 384, 430, 469, 572
Alw21I GWGCWC 1 cut(s) 269
AlwI GGATC 1 cut(s) 43
AoxI GGCC 4 cut(s) 370, 390, 405, 742
ApeKI GCWGC 3 cut(s) 632, 839, 842
AseI ATTAAT 1 cut(s) 165
AspS9I GGNCC 2 cut(s) 364, 390
AsuHPI GGTGA 2 cut(s) 46, 503
AvaII GGWCC 1 cut(s) 364
BbsI GAAGAC 3 cut(s) 63, 281, 501
Bbv12I GWGCWC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 644, 851, 854
BccI CCATC 3 cut(s) 365, 514, 749
BceAI ACGGC 1 cut(s) 604
BciT130I CCWGG 1 cut(s) 500
BisI GCNGC 5 cut(s) 408, 633, 840, 843, 893
BlsI GCNGC 5 cut(s) 409, 634, 841, 844, 894
Bme1390I CCNGG 1 cut(s) 500
Bme18I GGWCC 1 cut(s) 364
BmgT120I GGNCC 2 cut(s) 364, 390
BmrFI CCNGG 1 cut(s) 500
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 5 cut(s) 91, 113, 317, 813, 882
BmuI ACTGGG 1 cut(s) 447
BpiI GAAGAC 3 cut(s) 63, 281, 501
BpmI CTGGAG 1 cut(s) 352
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 528
BsaJI CCNNGG 4 cut(s) 57, 367, 499, 718
BsaWI WCCGGW 1 cut(s) 692
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 361, 587, 751
Bse1I ACTGG 4 cut(s) 335, 442, 535, 649
Bse3DI GCAATG 1 cut(s) 134
BseBI CCWGG 1 cut(s) 500
BseDI CCNNGG 4 cut(s) 57, 367, 499, 718
BseGI GGATG 5 cut(s) 509, 540, 760, 808, 828
BseLI CCNNNNNNNGG 4 cut(s) 58, 361, 587, 751
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 2 cut(s) 450, 737
BseNI ACTGG 4 cut(s) 335, 442, 535, 649
BseXI GCAGC 3 cut(s) 644, 851, 854
BsgI GTGCAG 1 cut(s) 813
BshFI GGCC 4 cut(s) 372, 392, 407, 744
BsiHKAI GWGCWC 1 cut(s) 269
BsiSI CCGG 1 cut(s) 693
BslFI GGGAC 2 cut(s) 643, 772
BslI CCNNNNNNNGG 4 cut(s) 58, 361, 587, 751
BsmFI GGGAC 2 cut(s) 643, 772
BsnI GGCC 4 cut(s) 372, 392, 407, 744
Bsp1286I GDGCHC 1 cut(s) 269
Bsp143I GATC 2 cut(s) 48, 447
Bsp19I CCATGG 1 cut(s) 718
BspACI CCGC 5 cut(s) 378, 408, 486, 729, 893
BspANI GGCC 4 cut(s) 372, 392, 407, 744
BspCNI CTCAG 2 cut(s) 451, 738
BspPI GGATC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 4 cut(s) 335, 442, 535, 649
BssECI CCNNGG 4 cut(s) 57, 367, 499, 718
BssMI GATC 2 cut(s) 48, 447
BssNI GRCGYC 1 cut(s) 528
BssT1I CCWWGG 3 cut(s) 57, 367, 718
Bst2UI CCWGG 1 cut(s) 500
Bst4CI ACNGT 1 cut(s) 887
Bst6I CTCTTC 2 cut(s) 219, 801
BstACI GRCGYC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 629
BstC8I GCNNGC 1 cut(s) 625
BstDEI CTNAG 4 cut(s) 41, 459, 746, 762
BstDSI CCRYGG 1 cut(s) 718
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 5 cut(s) 509, 540, 760, 808, 828
BstKTI GATC 2 cut(s) 51, 450
BstMBI GATC 2 cut(s) 48, 447
BstMWI GCNNNNNNNGC 3 cut(s) 398, 407, 629
BstNI CCWGG 1 cut(s) 500
BstNSI RCATGY 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 498
BstV1I GCAGC 3 cut(s) 644, 851, 854
BstV2I GAAGAC 3 cut(s) 63, 281, 501
BsuRI GGCC 4 cut(s) 372, 392, 407, 744
BtgI CCRYGG 1 cut(s) 718
BtsCI GGATG 5 cut(s) 509, 540, 760, 808, 828
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 411
Cac8I GCNNGC 1 cut(s) 625
Cfr13I GGNCC 2 cut(s) 364, 390
CseI GACGC 1 cut(s) 536
Csp6I GTAC 3 cut(s) 90, 600, 814
CviAII CATG 7 cut(s) 16, 260, 603, 629, 719, 786, 923
CviQI GTAC 3 cut(s) 90, 600, 814
DdeI CTNAG 4 cut(s) 41, 459, 746, 762
DpnI GATC 2 cut(s) 50, 449
DpnII GATC 2 cut(s) 48, 447
EaeI YGGCCR 1 cut(s) 405
Eam1104I CTCTTC 2 cut(s) 219, 801
EarI CTCTTC 2 cut(s) 219, 801
Eco130I CCWWGG 3 cut(s) 57, 367, 718
Eco47I GGWCC 1 cut(s) 364
Eco57I CTGAAG 2 cut(s) 96, 435
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 498
EcoT14I CCWWGG 3 cut(s) 57, 367, 718
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 3 cut(s) 57, 367, 718
FaeI CATG 7 cut(s) 19, 263, 606, 632, 722, 789, 926
FaqI GGGAC 2 cut(s) 643, 772
FatI CATG 7 cut(s) 15, 259, 602, 628, 718, 785, 922
Fnu4HI GCNGC 5 cut(s) 408, 633, 840, 843, 893
FokI GGATG 5 cut(s) 516, 527, 767, 815, 835
Fsp4HI GCNGC 5 cut(s) 408, 633, 840, 843, 893
GluI GCNGC 5 cut(s) 408, 633, 840, 843, 893
GsuI CTGGAG 1 cut(s) 352
HaeIII GGCC 4 cut(s) 372, 392, 407, 744
HapII CCGG 1 cut(s) 693
HgaI GACGC 1 cut(s) 536
Hin1I GRCGYC 1 cut(s) 528
Hin1II CATG 7 cut(s) 19, 263, 606, 632, 722, 789, 926
HinfI GANTC 2 cut(s) 136, 249
HpaII CCGG 1 cut(s) 693
HphI GGTGA 2 cut(s) 46, 503
Hpy188I TCNGA 2 cut(s) 76, 460
Hpy188III TCNNGA 2 cut(s) 187, 240
Hpy99I CGWCG 1 cut(s) 530
HpyAV CCTTC 6 cut(s) 166, 410, 541, 590, 610, 842
HpyCH4III ACNGT 1 cut(s) 887
HpyF10VI GCNNNNNNNGC 3 cut(s) 398, 407, 629
HpyF3I CTNAG 4 cut(s) 41, 459, 746, 762
Hsp92I GRCGYC 1 cut(s) 528
Hsp92II CATG 7 cut(s) 19, 263, 606, 632, 722, 789, 926
Kzo9I GATC 2 cut(s) 48, 447
LmnI GCTCC 2 cut(s) 272, 344
Lsp1109I GCAGC 3 cut(s) 644, 851, 854
LweI GCATC 5 cut(s) 91, 113, 317, 813, 882
MaeIII GTNAC 4 cut(s) 301, 349, 605, 724
MalI GATC 2 cut(s) 50, 449
MboI GATC 2 cut(s) 48, 447
MboII GAAGA 7 cut(s) 63, 236, 286, 506, 664, 790, 818
MhlI GDGCHC 1 cut(s) 269
MluCI AATT 3 cut(s) 443, 574, 861
MnlI CCTC 5 cut(s) 62, 247, 502, 745, 802
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 3 cut(s) 12, 165, 937
MslI CAYNNNNRTG 1 cut(s) 821
MspA1I CMGCKG 2 cut(s) 488, 731
MspI CCGG 1 cut(s) 693
MspR9I CCNGG 1 cut(s) 500
MvaI CCWGG 1 cut(s) 500
MwoI GCNNNNNNNGC 3 cut(s) 398, 407, 629
NcoI CCATGG 1 cut(s) 718
NdeII GATC 2 cut(s) 48, 447
NlaIII CATG 7 cut(s) 19, 263, 606, 632, 722, 789, 926
NmuCI GTSAC 1 cut(s) 301
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 606
PciI ACATGT 1 cut(s) 602
PfeI GAWTC 2 cut(s) 136, 249
PkrI GCNGC 5 cut(s) 409, 634, 841, 844, 894
PscI ACATGT 1 cut(s) 602
PshBI ATTAAT 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 498
PspGI CCWGG 1 cut(s) 498
PspPI GGNCC 2 cut(s) 364, 390
RsaI GTAC 3 cut(s) 91, 601, 815
RsaNI GTAC 3 cut(s) 90, 600, 814
RseI CAYNNNNRTG 1 cut(s) 821
SaqAI TTAA 3 cut(s) 12, 165, 937
SatI GCNGC 5 cut(s) 408, 633, 840, 843, 893
Sau3AI GATC 2 cut(s) 48, 447
Sau96I GGNCC 2 cut(s) 364, 390
ScrFI CCNGG 1 cut(s) 500
SduI GDGCHC 1 cut(s) 269
SfaNI GCATC 5 cut(s) 91, 113, 317, 813, 882
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 821
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 3 cut(s) 443, 574, 861
SsiI CCGC 5 cut(s) 378, 408, 486, 729, 893
StyD4I CCNGG 1 cut(s) 498
StyI CCWWGG 3 cut(s) 57, 367, 718
TaaI ACNGT 1 cut(s) 887
TasI AATT 3 cut(s) 443, 574, 861
TauI GCSGC 2 cut(s) 410, 895
TfiI GAWTC 2 cut(s) 136, 249
Tru1I TTAA 3 cut(s) 12, 165, 937
Tru9I TTAA 3 cut(s) 12, 165, 937
TscAI CASTG 2 cut(s) 408, 418
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 3 cut(s) 632, 839, 842
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 5 cut(s) 32, 237, 309, 529, 819
TspGWI ACGGA 1 cut(s) 270
TspRI CASTG 2 cut(s) 408, 418
VpaK11BI GGWCC 1 cut(s) 364
VspI ATTAAT 1 cut(s) 165
XagI CCTNNNNNAGG 1 cut(s) 749
XceI RCATGY 1 cut(s) 606
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.