Rorug02G0285400

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
31086675 .. 31087483
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0285400.1

Sequence Viewer

Length: 636 bp
ATGGAACCACAACAACAGCAACCAACAGAGGAGGGAGGAAACACCCAAGCAGCTGGAAGTAGTGCCAACATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGCATGTTGAGGGTAAGAACACTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGATGATGGTAGATCCATTGATCTCAACTTTGGTTCCACCTATTCTACTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGCTGACTAG

Protein Analysis

211

Amino Acids

23.1

Weight (kDa)

5.36

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 9.6e-09 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 620
AciI CCGC 1 cut(s) 570
AclI AACGTT 1 cut(s) 591
AclWI GGATC 4 cut(s) 141, 327, 340, 375
AcuI CTGAAG 1 cut(s) 536
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 1 cut(s) 91
AfeI AGCGCT 1 cut(s) 541
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 1 cut(s) 467
AhlI ACTAGT 2 cut(s) 314, 359
AjnI CCWGG 2 cut(s) 92, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AluBI AGCT 4 cut(s) 53, 199, 604, 626
AluI AGCT 4 cut(s) 53, 199, 604, 626
Alw21I GWGCWC 2 cut(s) 492, 606
Alw26I GTCTC 1 cut(s) 197
Alw44I GTGCAC 1 cut(s) 488
AlwI GGATC 4 cut(s) 141, 327, 340, 375
Ama87I CYCGRG 1 cut(s) 261
Aor13HI TCCGGA 1 cut(s) 620
Aor51HI AGCGCT 1 cut(s) 541
ApaLI GTGCAC 1 cut(s) 488
ApeKI GCWGC 3 cut(s) 50, 293, 626
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
Asp700I GAANNNNTTC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 542
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 446
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 1 cut(s) 354
BaeGI GKGCMC 3 cut(s) 164, 306, 492
BamHI GGATCC 1 cut(s) 332
BanII GRGCYC 2 cut(s) 262, 606
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 2 cut(s) 492, 606
BbvI GCAGC 3 cut(s) 62, 280, 613
BccI CCATC 2 cut(s) 368, 625
BceAI ACGGC 2 cut(s) 72, 508
BciT130I CCWGG 2 cut(s) 94, 458
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 359
BfaI CTAG 3 cut(s) 315, 360, 634
BfmI CTRYAG 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 294, 627
BlpI GCTNAGC 1 cut(s) 605
BlsI GCNGC 3 cut(s) 52, 295, 628
Bme1390I CCNGG 2 cut(s) 94, 458
Bme18I GGWCC 1 cut(s) 354
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 5 cut(s) 6, 245, 334, 355, 403
BmrFI CCNGG 2 cut(s) 94, 458
BpmI CTGGAG 4 cut(s) 93, 179, 282, 438
Bpu10I CCTNAGC 1 cut(s) 565
Bpu1102I GCTNAGC 1 cut(s) 605
BpuEI CTTGAG 2 cut(s) 113, 620
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 1 cut(s) 528
BsaWI WCCGGW 1 cut(s) 620
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 3 cut(s) 205, 299, 421
BseAI TCCGGA 1 cut(s) 620
BseBI CCWGG 2 cut(s) 94, 458
BseDI CCNNGG 1 cut(s) 528
BseGI GGATG 2 cut(s) 428, 617
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMII CTCAG 2 cut(s) 579, 619
BseNI ACTGG 3 cut(s) 205, 299, 421
BseRI GAGGAG 3 cut(s) 44, 459, 462
BseSI GKGCMC 3 cut(s) 164, 306, 492
BseXI GCAGC 3 cut(s) 62, 280, 613
BsiHKAI GWGCWC 2 cut(s) 492, 606
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 621
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 197
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 5 cut(s) 164, 262, 306, 492, 606
Bsp13I TCCGGA 1 cut(s) 620
Bsp143I GATC 6 cut(s) 133, 186, 332, 380, 388, 451
Bsp1720I GCTNAGC 1 cut(s) 605
BspACI CCGC 1 cut(s) 570
BspCNI CTCAG 2 cut(s) 578, 618
BspEI TCCGGA 1 cut(s) 620
BspLI GGNNCC 5 cut(s) 6, 245, 334, 355, 403
BspPI GGATC 4 cut(s) 141, 327, 340, 375
BsrI ACTGG 3 cut(s) 205, 299, 421
BssECI CCNNGG 1 cut(s) 528
BssMI GATC 6 cut(s) 133, 186, 332, 380, 388, 451
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 458
Bst4CI ACNGT 1 cut(s) 581
Bst6I CTCTTC 1 cut(s) 477
BstACI GRCGYC 1 cut(s) 501
BstDEI CTNAG 2 cut(s) 565, 605
BstEII GGTNACC 2 cut(s) 509, 572
BstF5I GGATG 2 cut(s) 428, 617
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 6 cut(s) 136, 189, 335, 383, 391, 454
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 6 cut(s) 133, 186, 332, 380, 388, 451
BstNI CCWGG 2 cut(s) 94, 458
BstNSI RCATGY 1 cut(s) 218
BstPI GGTNACC 2 cut(s) 509, 572
BstSCI CCNGG 2 cut(s) 92, 456
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 3 cut(s) 164, 306, 492
BstV1I GCAGC 3 cut(s) 62, 280, 613
BstX2I RGATCY 4 cut(s) 133, 186, 332, 380
BstXI CCANNNNNNTGG 1 cut(s) 53
BstYI RGATCY 4 cut(s) 133, 186, 332, 380
BtsCI GGATG 2 cut(s) 428, 617
BtsIMutI CAGTG 2 cut(s) 306, 586
CfoI GCGC 1 cut(s) 542
Cfr13I GGNCC 1 cut(s) 354
CsiI ACCWGGT 1 cut(s) 92
Csp6I GTAC 1 cut(s) 90
CviAII CATG 3 cut(s) 70, 215, 307
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 2 cut(s) 565, 605
DpnI GATC 6 cut(s) 135, 188, 334, 382, 390, 453
DpnII GATC 6 cut(s) 133, 186, 332, 380, 388, 451
Eam1104I CTCTTC 1 cut(s) 477
EarI CTCTTC 1 cut(s) 477
Ecl136II GAGCTC 1 cut(s) 604
Eco24I GRGCYC 2 cut(s) 262, 606
Eco47I GGWCC 1 cut(s) 354
Eco47III AGCGCT 1 cut(s) 541
Eco53kI GAGCTC 1 cut(s) 604
Eco57I CTGAAG 1 cut(s) 536
Eco88I CYCGRG 1 cut(s) 261
Eco91I GGTNACC 2 cut(s) 509, 572
EcoICRI GAGCTC 1 cut(s) 604
EcoO65I GGTNACC 2 cut(s) 509, 572
EcoRII CCWGG 2 cut(s) 92, 456
EcoT38I GRGCYC 2 cut(s) 262, 606
FaeI CATG 3 cut(s) 73, 218, 310
FaiI YATR 5 cut(s) 71, 144, 210, 216, 308
FatI CATG 3 cut(s) 69, 214, 306
Fnu4HI GCNGC 3 cut(s) 51, 294, 627
FokI GGATG 2 cut(s) 415, 604
FriOI GRGCYC 2 cut(s) 262, 606
Fsp4HI GCNGC 3 cut(s) 51, 294, 627
FspBI CTAG 3 cut(s) 315, 360, 634
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 51, 294, 627
GsuI CTGGAG 4 cut(s) 93, 179, 282, 438
HaeII RGCGCY 1 cut(s) 543
HapII CCGG 1 cut(s) 621
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 73, 218, 310
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HinfI GANTC 3 cut(s) 100, 123, 178
HpaII CCGG 1 cut(s) 621
HphI GGTGA 1 cut(s) 446
Hpy166II GTNNAC 2 cut(s) 357, 490
Hpy188I TCNGA 1 cut(s) 529
Hpy188III TCNNGA 6 cut(s) 110, 182, 247, 263, 599, 621
Hpy8I GTNNAC 2 cut(s) 357, 490
HpyAV CCTTC 2 cut(s) 511, 527
HpyCH4III ACNGT 1 cut(s) 581
HpyCH4IV ACGT 3 cut(s) 252, 501, 591
HpyCH4V TGCA 2 cut(s) 436, 490
HpyF3I CTNAG 2 cut(s) 565, 605
HpySE526I ACGT 3 cut(s) 252, 501, 591
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 73, 218, 310
HspAI GCGC 1 cut(s) 540
Kpn2I TCCGGA 1 cut(s) 620
Kzo9I GATC 6 cut(s) 133, 186, 332, 380, 388, 451
LmnI GCTCC 2 cut(s) 301, 623
Lsp1109I GCAGC 3 cut(s) 62, 280, 613
MabI ACCWGGT 1 cut(s) 92
MaeI CTAG 3 cut(s) 315, 360, 634
MaeII ACGT 3 cut(s) 252, 501, 591
MaeIII GTNAC 3 cut(s) 509, 548, 572
MalI GATC 6 cut(s) 135, 188, 334, 382, 390, 453
MboI GATC 6 cut(s) 133, 186, 332, 380, 388, 451
MboII GAAGA 1 cut(s) 464
MflI RGATCY 4 cut(s) 133, 186, 332, 380
MhlI GDGCHC 5 cut(s) 164, 262, 306, 492, 606
MluCI AATT 1 cut(s) 346
MroI TCCGGA 1 cut(s) 620
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 1 cut(s) 156
MspA1I CMGCKG 2 cut(s) 53, 199
MspI CCGG 1 cut(s) 621
MspR9I CCNGG 2 cut(s) 94, 458
MvaI CCWGG 2 cut(s) 94, 458
NdeII GATC 6 cut(s) 133, 186, 332, 380, 388, 451
NlaIII CATG 3 cut(s) 73, 218, 310
NlaIV GGNNCC 5 cut(s) 6, 245, 334, 355, 403
NspI RCATGY 1 cut(s) 218
PaeR7I CTCGAG 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 3 cut(s) 100, 123, 178
PkrI GCNGC 3 cut(s) 52, 295, 628
Psp124BI GAGCTC 1 cut(s) 606
Psp1406I AACGTT 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 92, 456
PspEI GGTNACC 2 cut(s) 509, 572
PspGI CCWGG 2 cut(s) 92, 456
PspN4I GGNNCC 5 cut(s) 6, 245, 334, 355, 403
PspPI GGNCC 1 cut(s) 354
PsuI RGATCY 4 cut(s) 133, 186, 332, 380
PvuII CAGCTG 2 cut(s) 53, 199
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
SacI GAGCTC 1 cut(s) 606
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 3 cut(s) 51, 294, 627
Sau3AI GATC 6 cut(s) 133, 186, 332, 380, 388, 451
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 2 cut(s) 94, 458
SduI GDGCHC 5 cut(s) 164, 262, 306, 492, 606
SexAI ACCWGGT 1 cut(s) 92
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 1 cut(s) 354
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 3 cut(s) 128, 261, 599
SmoI CTYRAG 3 cut(s) 128, 261, 599
SpeI ACTAGT 2 cut(s) 314, 359
Sse9I AATT 1 cut(s) 346
SsiI CCGC 1 cut(s) 570
SspMI CTAG 3 cut(s) 315, 360, 634
SstI GAGCTC 1 cut(s) 606
StyD4I CCNGG 2 cut(s) 92, 456
TaaI ACNGT 1 cut(s) 581
TaiI ACGT 3 cut(s) 255, 504, 594
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 346
TfiI GAWTC 3 cut(s) 100, 123, 178
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TscAI CASTG 2 cut(s) 306, 586
TseI GCWGC 3 cut(s) 50, 293, 626
TspDTI ATGAA 1 cut(s) 290
TspRI CASTG 2 cut(s) 306, 586
VneI GTGCAC 1 cut(s) 488
VpaK11BI GGWCC 1 cut(s) 354
XceI RCATGY 1 cut(s) 218
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 3 cut(s) 315, 360, 634
ZraI GACGTC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.