Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

24583819 .. 24584540

Gene Structure 722 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012979

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGACGAAGCAAACAAACCTTACAAACAGTGTCAATGGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTTAAGGCTCATGAATGTTCCACAAAGATCACTTCTTTCAGATATGCAAATGCTACTGTGCCAGCAACAATGGACTGGAGACAGAAAGGAGCTGTTACCCCAATCAAGGACCAAGGCCAATGTGTGGCAGCCATGGAAGGAATTACTCAACTCACAACTGGTAAACTGATTTCCTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTTAATGGTGAAGACCAAGGCTGTGAGGGTGGCCTCATGGATGATGCCTTTCAGTTCATCAATCAGAACCATGGACTAAGCACCGAGGCCAATTATCCCTACACAGGGGTTGATGGTACATGCAATGCTAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCACGAAGATGTGCCTGCAAACAGTGAAAGCGCCCTACTTAATGCTGTTGCTAATCGACTTATTTCTACTGCCATTGATGCCAGCGGATCTGATTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACATGCGGAACGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

199

Amino Acids

21.25

Weight (kDa)

4.7

Isoelectric Point (pI)

18.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	48 - 183	1.2e-36	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	208
AciI	CCGC	2 cut(s)	537, 584
AclWI	GGATC	1 cut(s)	547
AcoI	YGGCCR	1 cut(s)	451
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	4 cut(s)	190, 208, 392, 393
AgsI	TTSAA	1 cut(s)	560
AluBI	AGCT	2 cut(s)	176, 274
AluI	AGCT	2 cut(s)	176, 274
Alw26I	GTCTC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	547
AoxI	GGCC	4 cut(s)	199, 319, 375, 451
ApeKI	GCWGC	2 cut(s)	212, 437
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	193
BalI	TGGCCA	1 cut(s)	453
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	224, 449
BccI	CCATC	1 cut(s)	395
BcoDI	GTCTC	1 cut(s)	157
BfaI	CTAG	1 cut(s)	595
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	213, 438
BlsI	GCNGC	2 cut(s)	214, 439
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmsI	GCATC	2 cut(s)	322, 520
BpiI	GAAGAC	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	82
BsaJI	CCNNGG	5 cut(s)	196, 216, 304, 358, 372
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 208, 392, 393
Bse1I	ACTGG	3 cut(s)	164, 247, 454
Bse3DI	GCAATG	1 cut(s)	418
BseCI	ATCGAT	1 cut(s)	82
BseDI	CCNNGG	5 cut(s)	196, 216, 304, 358, 372
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	4 cut(s)	190, 208, 392, 393
BseMI	GCAATG	1 cut(s)	418
BseNI	ACTGG	3 cut(s)	164, 247, 454
BseXI	GCAGC	2 cut(s)	224, 449
BshFI	GGCC	4 cut(s)	201, 321, 377, 453
BshVI	ATCGAT	1 cut(s)	82
BslI	CCNNNNNNNGG	4 cut(s)	190, 208, 392, 393
BsmAI	GTCTC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	201, 321, 377, 453
Bsp143I	GATC	2 cut(s)	111, 539
Bsp19I	CCATGG	2 cut(s)	216, 358
BspACI	CCGC	2 cut(s)	537, 584
BspANI	GGCC	4 cut(s)	201, 321, 377, 453
BspDI	ATCGAT	1 cut(s)	82
BspHI	TCATGA	1 cut(s)	94
BspPI	GGATC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	3 cut(s)	164, 247, 454
BssECI	CCNNGG	5 cut(s)	196, 216, 304, 358, 372
BssMI	GATC	2 cut(s)	111, 539
BssT1I	CCWWGG	4 cut(s)	196, 216, 304, 358
Bst4CI	ACNGT	4 cut(s)	29, 142, 284, 476
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	3 cut(s)	147, 468, 535
BstDEI	CTNAG	2 cut(s)	365, 417
BstDSI	CCRYGG	2 cut(s)	216, 358
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	114, 542
BstMAI	GTCTC	1 cut(s)	157
BstMBI	GATC	2 cut(s)	111, 539
BstMWI	GCNNNNNNNGC	2 cut(s)	434, 530
BstNSI	RCATGY	2 cut(s)	411, 584
BstV1I	GCAGC	2 cut(s)	224, 449
BstV2I	GAAGAC	1 cut(s)	306
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
Bsu15I	ATCGAT	1 cut(s)	82
BsuRI	GGCC	4 cut(s)	201, 321, 377, 453
BsuTUI	ATCGAT	1 cut(s)	82
BtgI	CCRYGG	2 cut(s)	216, 358
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	34, 481
Cac8I	GCNNGC	3 cut(s)	147, 468, 535
CciI	TCATGA	1 cut(s)	94
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	7 cut(s)	95, 217, 325, 359, 408, 434, 581
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	365, 417
DpnI	GATC	2 cut(s)	113, 541
DpnII	GATC	2 cut(s)	111, 539
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	4 cut(s)	196, 216, 304, 358
Eco47I	GGWCC	1 cut(s)	193
EcoT14I	CCWWGG	4 cut(s)	196, 216, 304, 358
ErhI	CCWWGG	4 cut(s)	196, 216, 304, 358
FaeI	CATG	7 cut(s)	98, 220, 328, 362, 411, 437, 584
FaiI	YATR	8 cut(s)	96, 129, 218, 326, 360, 409, 435, 582
FatI	CATG	7 cut(s)	94, 216, 324, 358, 407, 433, 580
Fnu4HI	GCNGC	2 cut(s)	213, 438
FokI	GGATG	1 cut(s)	341
Fsp4HI	GCNGC	2 cut(s)	213, 438
FspBI	CTAG	1 cut(s)	595
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	213, 438
GsuI	CTGGAG	1 cut(s)	181
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	4 cut(s)	201, 321, 377, 453
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	7 cut(s)	98, 220, 328, 362, 411, 437, 584
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HinfI	GANTC	2 cut(s)	545, 591
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	66, 248, 280
Hpy188I	TCNGA	4 cut(s)	125, 265, 354, 544
Hpy188III	TCNNGA	2 cut(s)	75, 95
Hpy8I	GTNNAC	3 cut(s)	66, 248, 280
HpyAV	CCTTC	2 cut(s)	215, 415
HpyCH4III	ACNGT	4 cut(s)	29, 142, 284, 476
HpyCH4V	TGCA	5 cut(s)	44, 131, 411, 437, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	434, 530
HpyF3I	CTNAG	2 cut(s)	365, 417
Hsp92II	CATG	7 cut(s)	98, 220, 328, 362, 411, 437, 584
HspAI	GCGC	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	111, 539
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	9 cut(s)	145, 159, 228, 260, 378, 435, 480, 547, 560
Lsp1109I	GCAGC	2 cut(s)	224, 449
LweI	GCATC	2 cut(s)	322, 520
MaeI	CTAG	1 cut(s)	595
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	113, 541
MboI	GATC	2 cut(s)	111, 539
MboII	GAAGA	3 cut(s)	71, 311, 470
MflI	RGATCY	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	453
MluCI	AATT	3 cut(s)	225, 379, 550
MluNI	TGGCCA	1 cut(s)	453
MnlI	CCTC	5 cut(s)	82, 307, 332, 367, 451
Mox20I	TGGCCA	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	453
MseI	TTAA	3 cut(s)	87, 291, 492
MslI	CAYNNNNRTG	1 cut(s)	459
Msp20I	TGGCCA	1 cut(s)	453
MspA1I	CMGCKG	1 cut(s)	537
MwoI	GCNNNNNNNGC	2 cut(s)	434, 530
NcoI	CCATGG	2 cut(s)	216, 358
NdeII	GATC	2 cut(s)	111, 539
NlaIII	CATG	7 cut(s)	98, 220, 328, 362, 411, 437, 584
NspI	RCATGY	2 cut(s)	411, 584
PagI	TCATGA	1 cut(s)	94
PfeI	GAWTC	1 cut(s)	545
PflMI	CCANNNNNTGG	1 cut(s)	208
PkrI	GCNGC	2 cut(s)	214, 439
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	539
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	459
SaqAI	TTAA	3 cut(s)	87, 291, 492
SatI	GCNGC	2 cut(s)	213, 438
Sau3AI	GATC	2 cut(s)	111, 539
Sau96I	GGNCC	1 cut(s)	193
SetI	ASST	4 cut(s)	21, 51, 178, 276
SfaNI	GCATC	2 cut(s)	322, 520
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
Sse9I	AATT	3 cut(s)	225, 379, 550
SsiI	CCGC	2 cut(s)	537, 584
SspMI	CTAG	1 cut(s)	595
StyI	CCWWGG	4 cut(s)	196, 216, 304, 358
TaaI	ACNGT	4 cut(s)	29, 142, 284, 476
TaqI	TCGA	3 cut(s)	82, 443, 508
TasI	AATT	3 cut(s)	225, 379, 550
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	3 cut(s)	87, 291, 492
Tru9I	TTAA	3 cut(s)	87, 291, 492
TscAI	CASTG	2 cut(s)	34, 481
TseI	GCWGC	2 cut(s)	212, 437
TspDTI	ATGAA	3 cut(s)	72, 111, 334
TspRI	CASTG	2 cut(s)	34, 481
Van91I	CCANNNNNTGG	1 cut(s)	208
VpaK11BI	GGWCC	1 cut(s)	193
XceI	RCATGY	2 cut(s)	411, 584
XspI	CTAG	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.