Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000109.1

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

55932 .. 56898

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000109.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

atgcgtaatggctacaagagccaatccttgtccaactccctgaaagctacaagttttaagtatggaaatgtcagtgatgtgccttcttcagtggactggagagaagagggcgcggtgactcccatcaaagaccaaggaaaatgtggtggtctaatggatgatgccttccaattcatccaaagcaacaaaggcctaacaactgaagccaattacccctaccagggtgttgacagaagttgcaaaactcagaatgctacatcccaagcagcctccatcactgggcacgaggatgtgcctaaaaacgacgagaatgctctgctgcaggcagtcgccaacctgcctgtttctgttgccatcgatgcaagtggatccgcgtttcagttttattcgagatggggagagagtggatatgtaaggatgcaaagggatgttcctgccatggaaggactctatggaattgctatggacgctgatcttatccgaccgcatgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

164

Amino Acids

17.82

Weight (kDa)

4.99

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccII	CGCG	2 cut(s)	113, 374
AciI	CCGC	3 cut(s)	113, 372, 485
AclWI	GGATC	2 cut(s)	363, 376
AcuI	CTGAAG	2 cut(s)	72, 222
AfiI	CCNNNNNNNGG	3 cut(s)	220, 221, 279
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
AlwI	GGATC	2 cut(s)	363, 376
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	266, 319
AspLEI	GCGC	1 cut(s)	113
AsuHPI	GGTGA	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	285
BamHI	GGATCC	1 cut(s)	368
BauI	CACGAG	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	278, 306
BccI	CCATC	4 cut(s)	131, 281, 362, 387
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	1 cut(s)	221
BfmI	CTRYAG	1 cut(s)	320
BfuAI	ACCTGC	1 cut(s)	345
BisI	GCNGC	2 cut(s)	267, 320
BlsI	GCNGC	2 cut(s)	268, 321
Bme1390I	CCNGG	1 cut(s)	221
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	151, 349, 408
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	118
Bsa29I	ATCGAT	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	133, 220, 438
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 221, 279
Bse1I	ACTGG	2 cut(s)	101, 283
BseBI	CCWGG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	133, 220, 438
BseGI	GGATG	6 cut(s)	163, 174, 257, 295, 423, 433
BseLI	CCNNNNNNNGG	3 cut(s)	220, 221, 279
BseMII	CTCAG	1 cut(s)	260
BseNI	ACTGG	2 cut(s)	101, 283
BseSI	GKGCMC	1 cut(s)	285
BseXI	GCAGC	2 cut(s)	278, 306
Bsh1236I	CGCG	2 cut(s)	113, 374
Bsh1285I	CGRYCG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	192
BshVI	ATCGAT	1 cut(s)	357
BsiEI	CGRYCG	1 cut(s)	485
BslI	CCNNNNNNNGG	3 cut(s)	220, 221, 279
BsmI	GAATGC	2 cut(s)	256, 316
BsnI	GGCC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	285
Bsp143I	GATC	2 cut(s)	368, 472
Bsp19I	CCATGG	1 cut(s)	438
BspACI	CCGC	3 cut(s)	113, 372, 485
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	259
BspDI	ATCGAT	1 cut(s)	357
BspFNI	CGCG	2 cut(s)	113, 374
BspLI	GGNNCC	1 cut(s)	370
BspMAI	CTGCAG	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	345
BspPI	GGATC	2 cut(s)	363, 376
BsrI	ACTGG	2 cut(s)	101, 283
BssECI	CCNNGG	3 cut(s)	133, 220, 438
BssMI	GATC	2 cut(s)	368, 472
BssSI	CACGAG	1 cut(s)	284
BssT1I	CCWWGG	2 cut(s)	133, 438
Bst2BI	CACGAG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	1 cut(s)	438
BstF5I	GGATG	6 cut(s)	163, 174, 257, 295, 423, 433
BstFNI	CGCG	2 cut(s)	113, 374
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	2 cut(s)	371, 475
BstMBI	GATC	2 cut(s)	368, 472
BstMCI	CGRYCG	1 cut(s)	485
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 189, 359, 467
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	320
BstSLI	GKGCMC	1 cut(s)	285
BstUI	CGCG	2 cut(s)	113, 374
BstV1I	GCAGC	2 cut(s)	278, 306
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	438
BtsCI	GGATG	6 cut(s)	163, 174, 257, 295, 423, 433
BtsIMutI	CAGTG	3 cut(s)	79, 96, 276
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	113
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	476
CviAII	CATG	2 cut(s)	439, 488
CviJI	RGCY	6 cut(s)	12, 21, 47, 192, 206, 269
CviKI_1	RGCY	6 cut(s)	12, 21, 47, 192, 206, 269
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	370, 474
DpnII	GATC	2 cut(s)	368, 472
Eam1104I	CTCTTC	1 cut(s)	99
EarI	CTCTTC	1 cut(s)	99
Eco130I	CCWWGG	2 cut(s)	133, 438
Eco147I	AGGCCT	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	72, 222
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	2 cut(s)	133, 438
ErhI	CCWWGG	2 cut(s)	133, 438
FaeI	CATG	2 cut(s)	442, 491
FaiI	YATR	6 cut(s)	63, 411, 440, 453, 464, 489
FatI	CATG	2 cut(s)	438, 487
Fnu4HI	GCNGC	2 cut(s)	267, 320
FokI	GGATG	6 cut(s)	161, 170, 244, 302, 430, 440
Fsp4HI	GCNGC	2 cut(s)	267, 320
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	267, 320
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	192
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	442, 491
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	118, 447
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	94, 229
Hpy188I	TCNGA	2 cut(s)	249, 482
Hpy188III	TCNNGA	1 cut(s)	390
Hpy8I	GTNNAC	2 cut(s)	94, 229
Hpy99I	CGWCG	1 cut(s)	308
HpyAV	CCTTC	3 cut(s)	93, 175, 437
HpyCH4V	TGCA	4 cut(s)	240, 322, 362, 421
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 189, 359, 467
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	442, 491
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	2 cut(s)	368, 472
LpnPI	CCDG	9 cut(s)	53, 82, 206, 233, 264, 308, 350, 354, 447
Lsp1109I	GCAGC	2 cut(s)	278, 306
LweI	GCATC	3 cut(s)	151, 349, 408
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	370, 474
MboI	GATC	2 cut(s)	368, 472
MboII	GAAGA	2 cut(s)	78, 116
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	285
MluCI	AATT	3 cut(s)	170, 208, 456
MlyI	GAGTC	2 cut(s)	112, 441
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	3 cut(s)	100, 280, 280
MseI	TTAA	2 cut(s)	57, 493
MslI	CAYNNNNRTG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	2 cut(s)	256, 316
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	113, 374
MwoI	GCNNNNNNNGC	4 cut(s)	18, 189, 359, 467
NcoI	CCATGG	1 cut(s)	438
NdeII	GATC	2 cut(s)	368, 472
NlaIII	CATG	2 cut(s)	442, 491
NlaIV	GGNNCC	1 cut(s)	370
NmuCI	GTSAC	1 cut(s)	115
PceI	AGGCCT	1 cut(s)	192
PctI	GAATGC	2 cut(s)	256, 316
PkrI	GCNGC	2 cut(s)	268, 321
PleI	GAGTC	2 cut(s)	112, 441
PpsI	GAGTC	2 cut(s)	112, 441
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	324
PsuI	RGATCY	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	57, 493
SatI	GCNGC	2 cut(s)	267, 320
Sau3AI	GATC	2 cut(s)	368, 472
SchI	GAGTC	2 cut(s)	112, 441
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	285
SetI	ASST	2 cut(s)	49, 339
SfaNI	GCATC	3 cut(s)	151, 349, 408
SfcI	CTRYAG	1 cut(s)	320
SmiMI	CAYNNNNRTG	1 cut(s)	288
Sse9I	AATT	3 cut(s)	170, 208, 456
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	3 cut(s)	113, 372, 485
StuI	AGGCCT	1 cut(s)	192
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	133, 438
TaqI	TCGA	2 cut(s)	357, 389
TasI	AATT	3 cut(s)	170, 208, 456
Tru1I	TTAA	2 cut(s)	57, 493
Tru9I	TTAA	2 cut(s)	57, 493
TscAI	CASTG	3 cut(s)	79, 96, 283
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	2 cut(s)	266, 319
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	1 cut(s)	163
TspRI	CASTG	3 cut(s)	79, 96, 283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.