FvH4_6g27180

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
20884643 .. 20885762
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27180.t1

Sequence Viewer

Length: 978 bp
ATGTTCGGGGCTTGGTCTTCTGAGGCCACTTCTCGGAATGTTCAAGATGCATCTATGTATGAGAGATACGAGCAATGGATGGCTCGTTATGGACGCCAATATAGCAACATGAACGAGAAGGAGACTCGCTTCAATATATTCAAGAAAAATGTGGCGTTTATTGAATCTTCCAATAACAATGCAGACAAACCATACAAATTGAGCGTCAATCAGTTTGCAGACCTCACGGCTGAAGAGTTCAAATCCCAAAGGACTGGATTCAAGGGTCCTGGGGATCTACCACCGCTGACGACTACTTTCAAGTATGAGAATGTTAGTGTAGTGCCATCTTCACTAGACTGGAGAACCAAAGGAGCTGTGATGCCTGTCAAGGACCAAGGAGAATGTGGAAGCTGTTGGGCTTTCGCAACAGTGGGAGCCTTGGAAGGAGCAATTCAGCTTGCTACTGGTAAACTAATCTCTATGTCTGAGCAAGAGTTGGTTGACTGTAATGTGGGAGGTGAGAATGAAGGATGTAATGGTGGCTATCCCGACGTTGCCTTTCTCTACATCATAGAAAAGCACGGGCTTACAAACGAGGCTAACTATCCCTACACTGCATCTGATAATGTGTGCAATGCTACAGAGGTAGACACACCTTCAGGTAGCATAACCGCCTACGAAGATGTGCCTGTAAACAGTGAACTGGACCTTCTCAAGGCTGTTGCTAATCAACCAGTATCTGTTTGCATCCAGGCTTCTGGAGCATTCATGTCCTATTCTTCTGGTGTGTTGACAGGACCTTGTGGAACGGACCTCGATCATTGTGTCACCGCTGTTGGTTATGGAACAAGTGATGATGGGATCGATTATTGGTTGCTGAAAAATTCATGGGGCACAGAATGGGGTGAAGAAGGCTACGCTAGGATTCAAAGAAATATAGAGGCAGTGGAAGGAATGTGTGGCATTGCTACGTCAGCCTCTTACGCTATTGTGTAG

Protein Analysis

326

Amino Acids

35.38

Weight (kDa)

4.47

Isoelectric Point (pI)

29.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 23 - 80 7.9e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 108 - 324 3.9e-77 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 630
AciI CCGC 3 cut(s) 284, 654, 813
AclWI GGATC 2 cut(s) 282, 851
AcsI RAATTY 1 cut(s) 865
AcuI CTGAAG 2 cut(s) 252, 624
AcyI GRCGYC 1 cut(s) 94
AfiI CCNNNNNNNGG 2 cut(s) 33, 697
AgsI TTSAA 8 cut(s) 44, 133, 142, 164, 241, 262, 301, 911
AjnI CCWGG 2 cut(s) 268, 732
AluBI AGCT 3 cut(s) 356, 393, 439
AluI AGCT 3 cut(s) 356, 393, 439
Alw26I GTCTC 1 cut(s) 116
AlwI GGATC 2 cut(s) 282, 851
AlwNI CAGNNNCTG 1 cut(s) 722
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 865
ArsI GACNNNNNNTTYG 2 cut(s) 189, 221
AspS9I GGNCC 5 cut(s) 266, 373, 688, 779, 793
AsuHPI GGTGA 3 cut(s) 512, 802, 899
AvaII GGWCC 5 cut(s) 266, 373, 688, 779, 793
BaeGI GKGCMC 1 cut(s) 878
BbsI GAAGAC 1 cut(s) 9
BccI CCATC 3 cut(s) 73, 334, 833
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 2 cut(s) 270, 734
BcoDI GTCTC 1 cut(s) 116
BfaI CTAG 2 cut(s) 335, 903
BfmI CTRYAG 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 270, 734
Bme18I GGWCC 5 cut(s) 266, 373, 688, 779, 793
BmgT120I GGNCC 5 cut(s) 266, 373, 688, 779, 793
BmiI GGNNCC 2 cut(s) 267, 418
BmrFI CCNGG 2 cut(s) 270, 734
BmsI GCATC 5 cut(s) 37, 59, 351, 608, 738
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 2 cut(s) 361, 762
BpuEI CTTGAG 1 cut(s) 680
Bsa29I ATCGAT 1 cut(s) 846
BsaHI GRCGYC 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 269, 376, 420
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 697
Bse1I ACTGG 5 cut(s) 259, 344, 451, 690, 716
Bse3DI GCAATG 3 cut(s) 80, 622, 945
BseBI CCWGG 2 cut(s) 270, 734
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 3 cut(s) 269, 376, 420
BseGI GGATG 3 cut(s) 84, 518, 729
BseLI CCNNNNNNNGG 2 cut(s) 33, 697
BseMI GCAATG 3 cut(s) 80, 622, 945
BseMII CTCAG 2 cut(s) 12, 459
BseNI ACTGG 5 cut(s) 259, 344, 451, 690, 716
BseSI GKGCMC 1 cut(s) 878
BshFI GGCC 1 cut(s) 26
BshVI ATCGAT 1 cut(s) 846
BslI CCNNNNNNNGG 2 cut(s) 33, 697
BsmAI GTCTC 1 cut(s) 116
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 1 cut(s) 26
Bsp1286I GDGCHC 1 cut(s) 878
Bsp143I GATC 3 cut(s) 274, 799, 843
BspACI CCGC 3 cut(s) 284, 654, 813
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 2 cut(s) 13, 460
BspDI ATCGAT 1 cut(s) 846
BspLI GGNNCC 2 cut(s) 267, 418
BspPI GGATC 2 cut(s) 282, 851
BsrDI GCAATG 3 cut(s) 80, 622, 945
BsrI ACTGG 5 cut(s) 259, 344, 451, 690, 716
BssECI CCNNGG 3 cut(s) 269, 376, 420
BssMI GATC 3 cut(s) 274, 799, 843
BssNI GRCGYC 1 cut(s) 94
BssT1I CCWWGG 2 cut(s) 376, 420
Bst2UI CCWGG 2 cut(s) 270, 734
Bst4CI ACNGT 3 cut(s) 412, 488, 680
Bst6I CTCTTC 1 cut(s) 228
BstACI GRCGYC 1 cut(s) 94
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 21, 468
BstENI CCTNNNNNAGG 1 cut(s) 695
BstF5I GGATG 3 cut(s) 84, 518, 729
BstKTI GATC 3 cut(s) 277, 802, 846
BstMAI GTCTC 1 cut(s) 116
BstMBI GATC 3 cut(s) 274, 799, 843
BstMWI GCNNNNNNNGC 4 cut(s) 102, 743, 956, 965
BstNI CCWGG 2 cut(s) 270, 734
BstSCI CCNGG 2 cut(s) 268, 732
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 878
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 1 cut(s) 274
BstXI CCANNNNNNTGG 2 cut(s) 254, 740
BstYI RGATCY 1 cut(s) 274
Bsu15I ATCGAT 1 cut(s) 846
BsuRI GGCC 1 cut(s) 26
BsuTUI ATCGAT 1 cut(s) 846
BtsCI GGATG 3 cut(s) 84, 518, 729
BtsI GCAGTG 2 cut(s) 594, 933
BtsIMutI CAGTG 4 cut(s) 417, 594, 685, 933
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 722
Cfr13I GGNCC 5 cut(s) 266, 373, 688, 779, 793
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 2 cut(s) 102, 193
CviAII CATG 3 cut(s) 109, 751, 870
DdeI CTNAG 2 cut(s) 21, 468
DpnI GATC 3 cut(s) 276, 801, 845
DpnII GATC 3 cut(s) 274, 799, 843
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 2 cut(s) 376, 420
Eco47I GGWCC 5 cut(s) 266, 373, 688, 779, 793
Eco57I CTGAAG 2 cut(s) 252, 624
EcoNI CCTNNNNNAGG 1 cut(s) 695
EcoO109I RGGNCCY 2 cut(s) 266, 779
EcoRII CCWGG 2 cut(s) 268, 732
EcoT14I CCWWGG 2 cut(s) 376, 420
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 2 cut(s) 376, 420
FaeI CATG 3 cut(s) 112, 754, 873
FatI CATG 3 cut(s) 108, 750, 869
FblI GTMKAC 1 cut(s) 630
FokI GGATG 3 cut(s) 91, 525, 716
FspBI CTAG 2 cut(s) 335, 903
GsuI CTGGAG 2 cut(s) 361, 762
HaeIII GGCC 1 cut(s) 26
HgaI GACGC 2 cut(s) 102, 193
Hin1I GRCGYC 1 cut(s) 94
Hin1II CATG 3 cut(s) 112, 754, 873
HincII GTYRAC 2 cut(s) 484, 774
HindII GTYRAC 2 cut(s) 484, 774
HinfI GANTC 4 cut(s) 124, 164, 258, 907
HphI GGTGA 3 cut(s) 512, 802, 899
Hpy166II GTNNAC 6 cut(s) 452, 484, 631, 676, 683, 774
Hpy188I TCNGA 4 cut(s) 22, 36, 469, 604
Hpy188III TCNNGA 4 cut(s) 44, 142, 530, 741
Hpy8I GTNNAC 6 cut(s) 452, 484, 631, 676, 683, 774
Hpy99I CGWCG 1 cut(s) 536
HpyAV CCTTC 7 cut(s) 112, 419, 503, 648, 701, 887, 926
HpyCH4III ACNGT 3 cut(s) 412, 488, 680
HpyCH4IV ACGT 2 cut(s) 534, 953
HpyCH4V TGCA 6 cut(s) 50, 182, 218, 599, 615, 729
HpyF10VI GCNNNNNNNGC 4 cut(s) 102, 743, 956, 965
HpyF3I CTNAG 2 cut(s) 21, 468
HpySE526I ACGT 2 cut(s) 534, 953
Hsp92I GRCGYC 1 cut(s) 94
Hsp92II CATG 3 cut(s) 112, 754, 873
Kzo9I GATC 3 cut(s) 274, 799, 843
LmnI GCTCC 4 cut(s) 353, 416, 428, 743
LweI GCATC 5 cut(s) 37, 59, 351, 608, 738
MaeI CTAG 2 cut(s) 335, 903
MaeII ACGT 2 cut(s) 534, 953
MaeIII GTNAC 1 cut(s) 808
MalI GATC 3 cut(s) 276, 801, 845
MboI GATC 3 cut(s) 274, 799, 843
MboII GAAGA 7 cut(s) 9, 159, 245, 321, 674, 753, 902
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 878
MluCI AATT 3 cut(s) 197, 432, 865
MlyI GAGTC 1 cut(s) 118
MnlI CCTC 8 cut(s) 16, 233, 491, 571, 619, 806, 916, 970
Mph1103I ATGCAT 1 cut(s) 52
MspA1I CMGCKG 2 cut(s) 286, 815
MspR9I CCNGG 2 cut(s) 270, 734
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 270, 734
MwoI GCNNNNNNNGC 4 cut(s) 102, 743, 956, 965
NdeII GATC 3 cut(s) 274, 799, 843
NlaIII CATG 3 cut(s) 112, 754, 873
NlaIV GGNNCC 2 cut(s) 267, 418
NmuCI GTSAC 1 cut(s) 808
NsiI ATGCAT 1 cut(s) 52
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 3 cut(s) 164, 258, 907
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
PpuMI RGGWCCY 2 cut(s) 266, 779
Psp5II RGGWCCY 2 cut(s) 266, 779
Psp6I CCWGG 2 cut(s) 268, 732
PspGI CCWGG 2 cut(s) 268, 732
PspN4I GGNNCC 2 cut(s) 267, 418
PspPI GGNCC 5 cut(s) 266, 373, 688, 779, 793
PspPPI RGGWCCY 2 cut(s) 266, 779
PstNI CAGNNNCTG 1 cut(s) 722
PsuI RGATCY 1 cut(s) 274
Sau3AI GATC 3 cut(s) 274, 799, 843
Sau96I GGNCC 5 cut(s) 266, 373, 688, 779, 793
SchI GAGTC 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 270, 734
SduI GDGCHC 1 cut(s) 878
SfaNI GCATC 5 cut(s) 37, 59, 351, 608, 738
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 5 cut(s) 266, 373, 688, 779, 793
SmlI CTYRAG 1 cut(s) 695
SmoI CTYRAG 1 cut(s) 695
Sse9I AATT 3 cut(s) 197, 432, 865
SsiI CCGC 3 cut(s) 284, 654, 813
SspMI CTAG 2 cut(s) 335, 903
StyD4I CCNGG 2 cut(s) 268, 732
StyI CCWWGG 2 cut(s) 376, 420
TaaI ACNGT 3 cut(s) 412, 488, 680
TaiI ACGT 2 cut(s) 537, 956
TaqI TCGA 2 cut(s) 798, 846
TasI AATT 3 cut(s) 197, 432, 865
TfiI GAWTC 3 cut(s) 164, 258, 907
TscAI CASTG 4 cut(s) 417, 601, 685, 933
TseFI GTSAC 1 cut(s) 808
Tsp45I GTSAC 1 cut(s) 808
TspDTI ATGAA 4 cut(s) 125, 522, 739, 858
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 4 cut(s) 417, 601, 685, 933
VpaK11BI GGWCC 5 cut(s) 266, 373, 688, 779, 793
XagI CCTNNNNNAGG 1 cut(s) 695
XapI RAATTY 1 cut(s) 865
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 2 cut(s) 335, 903
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.