Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

40677879 .. 40678739

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGTGTTCACAGCCTCAAGAAATCGATTCAAGGGGGCATGAATGTTCCACAACAACCACTTGTTTCAAATATGAAAATGTTACCGTGCCAGCTACAGTGGACTGGAGACAGAAAGGAGCTGTGACTCTCATCAAGGACCAAGGCCAATGTGGATGCTGTTGGGCTTTCTCAGCCGTGGCAACCATGGAAGGAATTACTCAACTTACAACAGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGAGGCTTGATGGATGATGCATTTCAGTTCATCAATCAAAATCATGGACTTAGTACCGAGGCTAATTACCCCTATACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAAACCATGCAGCCTCAATCACTGGCCACGAAGATGTGCCTGCAAATAGTGAAAGTGCACTATTTAAGGCTGTTGCCAATCAACCTATTTCTGTTGCCATTGATGCTAGCAGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACCTGTGGAACTAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGTTTCAGCGATGATGGGACTATGTATTGGTTGGTGAAGAACTCATGGGGCACAGAATGGGGCGAAGAAGGTTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAGGTCTCTGTGGCATTGCTATGGCAGCCTCTTACCCCACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

248

Amino Acids

26.58

Weight (kDa)

4.42

Isoelectric Point (pI)

21.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	30 - 247	2.5e-83	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	2 cut(s)	340, 376
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	33, 70, 531
AluBI	AGCT	3 cut(s)	95, 122, 244
AluI	AGCT	3 cut(s)	95, 122, 244
Alw21I	GWGCWC	1 cut(s)	457
Alw26I	GTCTC	2 cut(s)	103, 710
Alw44I	GTGCAC	1 cut(s)	453
AoxI	GGCC	2 cut(s)	145, 421
ApaLI	GTGCAC	1 cut(s)	453
ApeKI	GCWGC	3 cut(s)	407, 692, 725
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	2 cut(s)	278, 640
AsuNHI	GCTAGC	1 cut(s)	503
AvaII	GGWCC	1 cut(s)	139
BaeGI	GKGCMC	2 cut(s)	457, 647
BalI	TGGCCA	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	457
BbvI	GCAGC	3 cut(s)	419, 679, 737
BccI	CCATC	3 cut(s)	289, 365, 602
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	103, 710
BfaI	CTAG	4 cut(s)	245, 504, 561, 566
BfmI	CTRYAG	1 cut(s)	96
BglII	AGATCT	1 cut(s)	509
BisI	GCNGC	3 cut(s)	408, 693, 726
BlsI	GCNGC	3 cut(s)	409, 694, 727
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	550
BmsI	GCATC	3 cut(s)	146, 292, 490
BmtI	GCTAGC	1 cut(s)	507
BpmI	CTGGAG	1 cut(s)	127
Bsa29I	ATCGAT	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	710
BsaJI	CCNNGG	5 cut(s)	142, 177, 186, 342, 571
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	3 cut(s)	110, 367, 424
Bse3DI	GCAATG	2 cut(s)	388, 714
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	142, 177, 186, 342, 571
BseGI	GGATG	2 cut(s)	161, 304
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	2 cut(s)	388, 714
BseMII	CTCAG	2 cut(s)	186, 225
BseNI	ACTGG	3 cut(s)	110, 367, 424
BseSI	GKGCMC	2 cut(s)	457, 647
BseXI	GCAGC	3 cut(s)	419, 679, 737
BsgI	GTGCAG	1 cut(s)	678
BshFI	GGCC	2 cut(s)	147, 423
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	2 cut(s)	103, 710
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	1 cut(s)	681
BsnI	GGCC	2 cut(s)	147, 423
Bso31I	GGTCTC	1 cut(s)	710
Bsp1286I	GDGCHC	2 cut(s)	457, 647
Bsp143I	GATC	2 cut(s)	271, 509
Bsp19I	CCATGG	2 cut(s)	186, 571
BspANI	GGCC	2 cut(s)	147, 423
BspCNI	CTCAG	2 cut(s)	185, 226
BspDI	ATCGAT	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	550
BspOI	GCTAGC	1 cut(s)	507
BspTNI	GGTCTC	1 cut(s)	710
BsrDI	GCAATG	2 cut(s)	388, 714
BsrI	ACTGG	3 cut(s)	110, 367, 424
BssECI	CCNNGG	5 cut(s)	142, 177, 186, 342, 571
BssMI	GATC	2 cut(s)	271, 509
BssT1I	CCWWGG	3 cut(s)	142, 186, 571
Bst4CI	ACNGT	3 cut(s)	88, 100, 254
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	93, 438, 505
BstDEI	CTNAG	3 cut(s)	172, 234, 335
BstDSI	CCRYGG	3 cut(s)	177, 186, 571
BstF5I	GGATG	2 cut(s)	161, 304
BstKTI	GATC	2 cut(s)	274, 512
BstMAI	GTCTC	2 cut(s)	103, 710
BstMBI	GATC	2 cut(s)	271, 509
BstMWI	GCNNNNNNNGC	4 cut(s)	173, 404, 500, 725
BstNSI	RCATGY	1 cut(s)	381
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	457, 647
BstV1I	GCAGC	3 cut(s)	419, 679, 737
BstX2I	RGATCY	1 cut(s)	509
BstYI	RGATCY	1 cut(s)	509
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	2 cut(s)	147, 423
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	3 cut(s)	177, 186, 571
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	161, 304
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	3 cut(s)	105, 417, 738
Cac8I	GCNNGC	3 cut(s)	93, 438, 505
Cfr13I	GGNCC	1 cut(s)	139
ClaI	ATCGAT	1 cut(s)	27
Csp6I	GTAC	2 cut(s)	339, 375
CviAII	CATG	7 cut(s)	41, 187, 329, 378, 404, 572, 639
CviQI	GTAC	2 cut(s)	339, 375
DdeI	CTNAG	3 cut(s)	172, 234, 335
DpnI	GATC	2 cut(s)	273, 511
DpnII	GATC	2 cut(s)	271, 509
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	421
Eco130I	CCWWGG	3 cut(s)	142, 186, 571
Eco31I	GGTCTC	1 cut(s)	710
Eco47I	GGWCC	1 cut(s)	139
EcoT14I	CCWWGG	3 cut(s)	142, 186, 571
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	3 cut(s)	142, 186, 571
FaeI	CATG	7 cut(s)	44, 190, 332, 381, 407, 575, 642
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	7 cut(s)	40, 186, 328, 377, 403, 571, 638
Fnu4HI	GCNGC	3 cut(s)	408, 693, 726
FokI	GGATG	2 cut(s)	168, 311
Fsp4HI	GCNGC	3 cut(s)	408, 693, 726
FspBI	CTAG	4 cut(s)	245, 504, 561, 566
GluI	GCNGC	3 cut(s)	408, 693, 726
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	2 cut(s)	147, 423
Hin1II	CATG	7 cut(s)	44, 190, 332, 381, 407, 575, 642
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	29, 127
HphI	GGTGA	2 cut(s)	278, 640
Hpy166II	GTNNAC	5 cut(s)	11, 103, 218, 250, 455
Hpy188I	TCNGA	2 cut(s)	235, 514
Hpy188III	TCNNGA	1 cut(s)	20
Hpy8I	GTNNAC	5 cut(s)	11, 103, 218, 250, 455
HpyAV	CCTTC	4 cut(s)	185, 385, 656, 695
HpyCH4III	ACNGT	3 cut(s)	88, 100, 254
HpyCH4V	TGCA	7 cut(s)	305, 381, 407, 440, 455, 679, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	173, 404, 500, 725
HpyF3I	CTNAG	3 cut(s)	172, 234, 335
Hsp92II	CATG	7 cut(s)	44, 190, 332, 381, 407, 575, 642
Kzo9I	GATC	2 cut(s)	271, 509
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	9 cut(s)	91, 105, 198, 348, 405, 450, 531, 565, 683
Lsp1109I	GCAGC	3 cut(s)	419, 679, 737
LweI	GCATC	3 cut(s)	146, 292, 490
MaeI	CTAG	4 cut(s)	245, 504, 561, 566
MaeIII	GTNAC	4 cut(s)	82, 124, 577, 665
MalI	GATC	2 cut(s)	273, 511
MboI	GATC	2 cut(s)	271, 509
MboII	GAAGA	4 cut(s)	281, 440, 643, 671
MflI	RGATCY	1 cut(s)	509
MhlI	GDGCHC	2 cut(s)	457, 647
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	3 cut(s)	195, 349, 521
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	121
MnlI	CCTC	6 cut(s)	27, 277, 281, 337, 421, 739
Mox20I	TGGCCA	1 cut(s)	423
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	1 cut(s)	462
MslI	CAYNNNNRTG	3 cut(s)	429, 674, 719
Msp20I	TGGCCA	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	681
MwoI	GCNNNNNNNGC	4 cut(s)	173, 404, 500, 725
NcoI	CCATGG	2 cut(s)	186, 571
NdeII	GATC	2 cut(s)	271, 509
NheI	GCTAGC	1 cut(s)	503
NlaIII	CATG	7 cut(s)	44, 190, 332, 381, 407, 575, 642
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	381
PctI	GAATGC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	3 cut(s)	409, 694, 727
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	550
PspPI	GGNCC	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	2 cut(s)	340, 376
RsaNI	GTAC	2 cut(s)	339, 375
RseI	CAYNNNNRTG	3 cut(s)	429, 674, 719
SaqAI	TTAA	1 cut(s)	462
SatI	GCNGC	3 cut(s)	408, 693, 726
Sau3AI	GATC	2 cut(s)	271, 509
Sau96I	GGNCC	1 cut(s)	139
SchI	GAGTC	1 cut(s)	121
SduI	GDGCHC	2 cut(s)	457, 647
SetI	ASST	8 cut(s)	97, 124, 217, 246, 484, 554, 667, 706
SfaNI	GCATC	3 cut(s)	146, 292, 490
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	3 cut(s)	429, 674, 719
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	3 cut(s)	195, 349, 521
SspMI	CTAG	4 cut(s)	245, 504, 561, 566
StyI	CCWWGG	3 cut(s)	142, 186, 571
TaaI	ACNGT	3 cut(s)	88, 100, 254
TaqI	TCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	195, 349, 521
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	462
Tru9I	TTAA	1 cut(s)	462
TscAI	CASTG	3 cut(s)	105, 424, 745
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	3 cut(s)	407, 692, 725
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	4 cut(s)	17, 57, 90, 304
TspRI	CASTG	3 cut(s)	105, 424, 745
VneI	GTGCAC	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	139
XceI	RCATGY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	149
XspI	CTAG	4 cut(s)	245, 504, 561, 566
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.