Rroxscaffold_2G00102110

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
24156078 .. 24165576
9499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102110.1

Sequence Viewer

Length: 603 bp
ATGGAGTTCACCAACCTCGGAAAATGTCTTTGTTTGGCTTTGATCCTCGTGATGTTTGGAGCTTGGTCTTCTGAAGCCACTTCTCGCACTCTCCAAGATATTGCATCAATGTATGGGAGATACGAGCAATGGATGGATCATCATGGACGTGTCTATAACGAGATAAACGAAAAGGAGAAGCGCTTCCAGATATTCAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAAATGAAGAATTCATTGCCTCTAGAAATCGATTAAAGGGGCATGAATGTTCCACAAAGACCACATCTTTCAAGTATGAAAACGTACGTTACTGTGCCGGCTACTATGGACTGGAGACAGAAAGGAGCTGTAACCCCAATCAAGGATCAAGGCCAATGTGGTACGTGGTGGTGATGGCTGCTGTGAGGTTTATCTTTGGGTGGTCGGAGGTTGAGCGGTGGGTGGCAATGCAAGTGACTAAAGTGATTGACAGAGATCCTGTTGGGCTTTCTCAGCTGTGGCAGCCATGGAAGGAATCACTCAACTTTCAACAGGTAAACTAA

Protein Analysis

200

Amino Acids

23.36

Weight (kDa)

6.83

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 41 - 98 5.9e-20 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 496
AciI CCGC 1 cut(s) 496
AclWI GGATC 4 cut(s) 37, 144, 433, 530
AcsI RAATTY 1 cut(s) 290
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 2 cut(s) 366, 443
AfeI AGCGCT 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 422
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 3 cut(s) 196, 352, 590
AjiI CACGTC 1 cut(s) 149
AluBI AGCT 3 cut(s) 62, 408, 556
AluI AGCT 3 cut(s) 62, 408, 556
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 4 cut(s) 37, 144, 433, 530
Aor51HI AGCGCT 1 cut(s) 182
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 458, 562
ApoI RAATTY 1 cut(s) 290
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 182
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 463
BauI CACGAG 1 cut(s) 47
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 445, 574
BccI CCATC 2 cut(s) 127, 448
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 1 cut(s) 303
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 2 cut(s) 459, 563
BlsI GCNGC 2 cut(s) 460, 564
BmgBI CACGTC 1 cut(s) 149
BmsI GCATC 2 cut(s) 113, 223
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 413
Bsa29I ATCGAT 1 cut(s) 310
BsaAI YACGTR 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 16, 566
Bsc4I CCNNNNNNNGG 1 cut(s) 422
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 396
Bse3DI GCAATG 3 cut(s) 134, 294, 513
BseCI ATCGAT 1 cut(s) 310
BseDI CCNNGG 2 cut(s) 16, 566
BseGI GGATG 2 cut(s) 138, 221
BseLI CCNNNNNNNGG 1 cut(s) 422
BseMI GCAATG 3 cut(s) 134, 294, 513
BseMII CTCAG 1 cut(s) 566
BseNI ACTGG 1 cut(s) 396
BseXI GCAGC 2 cut(s) 445, 574
BshFI GGCC 1 cut(s) 433
BshVI ATCGAT 1 cut(s) 310
BsiSI CCGG 1 cut(s) 378
BsiWI CGTACG 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 389
BsnI GGCC 1 cut(s) 433
Bsp143I GATC 4 cut(s) 42, 136, 425, 535
Bsp19I CCATGG 1 cut(s) 566
BspACI CCGC 1 cut(s) 496
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 1 cut(s) 565
BspDI ATCGAT 1 cut(s) 310
BspPI GGATC 4 cut(s) 37, 144, 433, 530
BsrBI CCGCTC 1 cut(s) 496
BsrDI GCAATG 3 cut(s) 134, 294, 513
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 16, 566
BssMI GATC 4 cut(s) 42, 136, 425, 535
BssSI CACGAG 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 566
Bst2BI CACGAG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 374
BstBAI YACGTR 1 cut(s) 445
BstC8I GCNNGC 2 cut(s) 238, 379
BstDEI CTNAG 1 cut(s) 552
BstDSI CCRYGG 1 cut(s) 566
BstF5I GGATG 2 cut(s) 138, 221
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 4 cut(s) 45, 139, 428, 538
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 4 cut(s) 42, 136, 425, 535
BstMWI GCNNNNNNNGC 2 cut(s) 553, 562
BstV1I GCAGC 2 cut(s) 445, 574
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 535
BstYI RGATCY 1 cut(s) 535
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 1 cut(s) 433
BsuTUI ATCGAT 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 566
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 138, 221
Cac8I GCNNGC 2 cut(s) 238, 379
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 377
ClaI ATCGAT 1 cut(s) 310
Csp6I GTAC 2 cut(s) 365, 442
CviAII CATG 3 cut(s) 143, 323, 567
CviQI GTAC 2 cut(s) 365, 442
DdeI CTNAG 1 cut(s) 552
DpnI GATC 4 cut(s) 44, 138, 427, 537
DpnII GATC 4 cut(s) 42, 136, 425, 535
Eco130I CCWWGG 1 cut(s) 566
Eco47III AGCGCT 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 290
EcoT14I CCWWGG 1 cut(s) 566
ErhI CCWWGG 1 cut(s) 566
FaeI CATG 3 cut(s) 146, 326, 570
FaiI YATR 7 cut(s) 114, 144, 156, 324, 357, 387, 568
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FatI CATG 3 cut(s) 142, 322, 566
Fnu4HI GCNGC 2 cut(s) 459, 563
FokI GGATG 2 cut(s) 145, 208
Fsp4HI GCNGC 2 cut(s) 459, 563
FspBI CTAG 1 cut(s) 303
GlaI GCGC 1 cut(s) 182
GluI GCNGC 2 cut(s) 459, 563
GsuI CTGGAG 1 cut(s) 413
HaeII RGCGCY 1 cut(s) 184
HaeIII GGCC 1 cut(s) 433
HapII CCGG 1 cut(s) 378
HhaI GCGC 1 cut(s) 183
Hin1II CATG 3 cut(s) 146, 326, 570
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 2 cut(s) 218, 575
HpaII CCGG 1 cut(s) 378
HphI GGTGA 1 cut(s) 463
Hpy166II GTNNAC 2 cut(s) 9, 598
Hpy188I TCNGA 3 cut(s) 20, 73, 487
Hpy188III TCNNGA 3 cut(s) 49, 187, 303
Hpy8I GTNNAC 2 cut(s) 9, 598
HpyAV CCTTC 1 cut(s) 565
HpyCH4III ACNGT 1 cut(s) 374
HpyCH4IV ACGT 4 cut(s) 148, 363, 367, 444
HpyCH4V TGCA 4 cut(s) 104, 236, 272, 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 553, 562
HpyF3I CTNAG 1 cut(s) 552
HpySE526I ACGT 4 cut(s) 148, 363, 367, 444
Hsp92II CATG 3 cut(s) 146, 326, 570
HspAI GCGC 1 cut(s) 181
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 4 cut(s) 42, 136, 425, 535
LmnI GCTCC 2 cut(s) 59, 405
LpnPI CCDG 5 cut(s) 200, 377, 391, 552, 578
Lsp1109I GCAGC 2 cut(s) 445, 574
LweI GCATC 2 cut(s) 113, 223
MaeI CTAG 1 cut(s) 303
MaeII ACGT 4 cut(s) 148, 363, 367, 444
MaeIII GTNAC 3 cut(s) 368, 410, 514
MalI GATC 4 cut(s) 44, 138, 427, 537
MbiI CCGCTC 1 cut(s) 496
MboI GATC 4 cut(s) 42, 136, 425, 535
MboII GAAGA 2 cut(s) 60, 299
MflI RGATCY 1 cut(s) 535
MluCI AATT 3 cut(s) 251, 266, 290
MmeI TCCRAC 2 cut(s) 249, 465
MnlI CCTC 5 cut(s) 26, 56, 310, 459, 481
MroNI GCCGGC 1 cut(s) 377
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 254, 314
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 556
MspI CCGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 553, 562
NaeI GCCGGC 1 cut(s) 379
NcoI CCATGG 1 cut(s) 566
NdeII GATC 4 cut(s) 42, 136, 425, 535
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 3 cut(s) 146, 326, 570
NmuCI GTSAC 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 379
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 218, 575
Pfl23II CGTACG 1 cut(s) 364
PkrI GCNGC 2 cut(s) 460, 564
Ppu21I YACGTR 1 cut(s) 445
PspLI CGTACG 1 cut(s) 364
PsuI RGATCY 1 cut(s) 535
PvuII CAGCTG 1 cut(s) 556
RsaI GTAC 2 cut(s) 366, 443
RsaNI GTAC 2 cut(s) 365, 442
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 254, 314
SatI GCNGC 2 cut(s) 459, 563
Sau3AI GATC 4 cut(s) 42, 136, 425, 535
SfaNI GCATC 2 cut(s) 113, 223
SmiMI CAYNNNNRTG 1 cut(s) 147
Sse9I AATT 3 cut(s) 251, 266, 290
SsiI CCGC 1 cut(s) 496
SspMI CTAG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 566
TaaI ACNGT 1 cut(s) 374
TaiI ACGT 4 cut(s) 151, 366, 370, 447
TaqI TCGA 1 cut(s) 310
TasI AATT 3 cut(s) 251, 266, 290
TfiI GAWTC 2 cut(s) 218, 575
Tru1I TTAA 2 cut(s) 254, 314
Tru9I TTAA 2 cut(s) 254, 314
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 2 cut(s) 458, 562
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 4 cut(s) 283, 300, 339, 372
XapI RAATTY 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 302
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.