Prupe.3G106400_v2.0.a1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Reverse (-)
8452993 .. 8453388
396 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G106400.1

Sequence Viewer

Length: 396 bp
ATGTTGAGGACATGGTCTTCTGAAGCCACTTCTCGTAGTCTCCAAGATGCATCCATGTATGGAAGACACGAGCAATGGATGGCTCGTTATGCACGCACATATAATGACATTAGGGAGAAGGAGAAACGTTTCAACATATTCAAGGAAAATGTGGCATATATAGAATCTTCCAATGAGGATGCAAACAAACTATACAAACTAAGTGTGAATCAATTTGCAGACCTTACAAATGATGAGTTCAAAGCGTCACGAAATCGATTCAAGGGGCATGAGTGTTCCACAAAGACGACTTCTTTCAAATATGAAAATGCAACATCATCAATGCCGACTACTATGGACTGGAGAAAGAAAGGAGCCGTGACACCCATCAAGGACCAAGGCCAATGTGGTAATTAA

Protein Analysis

132

Amino Acids

15.3

Weight (kDa)

9.25

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 42
AgsI TTSAA 5 cut(s) 133, 142, 241, 262, 298
Alw26I GTCTC 1 cut(s) 44
AoxI GGCC 1 cut(s) 379
Asp700I GAANNNNTTC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 373
AvaII GGWCC 1 cut(s) 373
BauI CACGAG 1 cut(s) 68
BbsI GAAGAC 2 cut(s) 9, 70
BccI CCATC 2 cut(s) 73, 374
BceAI ACGGC 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 373
BmgT120I GGNCC 1 cut(s) 373
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 3 cut(s) 37, 59, 169
BpiI GAAGAC 2 cut(s) 9, 70
BpmI CTGGAG 1 cut(s) 361
Bsa29I ATCGAT 1 cut(s) 256
BsaJI CCNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 344
Bse3DI GCAATG 1 cut(s) 80
BseCI ATCGAT 1 cut(s) 256
BseDI CCNNGG 1 cut(s) 376
BseGI GGATG 3 cut(s) 50, 84, 184
BseMI GCAATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 344
BshFI GGCC 1 cut(s) 381
BshVI ATCGAT 1 cut(s) 256
BsmAI GTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 381
BspANI GGCC 1 cut(s) 381
BspDI ATCGAT 1 cut(s) 256
BspLI GGNNCC 1 cut(s) 355
BsrDI GCAATG 1 cut(s) 80
BsrI ACTGG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 376
BssSI CACGAG 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 376
Bst2BI CACGAG 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 3 cut(s) 50, 84, 184
BstMAI GTCTC 1 cut(s) 44
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV2I GAAGAC 2 cut(s) 9, 70
Bsu15I ATCGAT 1 cut(s) 256
BsuRI GGCC 1 cut(s) 381
BsuTUI ATCGAT 1 cut(s) 256
BtsCI GGATG 3 cut(s) 50, 84, 184
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 373
ClaI ATCGAT 1 cut(s) 256
CseI GACGC 1 cut(s) 234
CviAII CATG 3 cut(s) 12, 55, 269
CviJI RGCY 4 cut(s) 26, 83, 356, 381
CviKI_1 RGCY 4 cut(s) 26, 83, 356, 381
DdeI CTNAG 1 cut(s) 200
Eco130I CCWWGG 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 373
Eco57I CTGAAG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 376
FaeI CATG 3 cut(s) 15, 58, 272
FatI CATG 3 cut(s) 11, 54, 268
FokI GGATG 3 cut(s) 37, 91, 191
GsuI CTGGAG 1 cut(s) 361
HaeIII GGCC 1 cut(s) 381
HgaI GACGC 1 cut(s) 234
Hin1II CATG 3 cut(s) 15, 58, 272
HinfI GANTC 3 cut(s) 164, 208, 258
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 112
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 5 cut(s) 50, 92, 182, 218, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 3 cut(s) 15, 58, 272
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 1 cut(s) 325
LweI GCATC 3 cut(s) 37, 59, 169
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 2 cut(s) 246, 358
MboII GAAGA 3 cut(s) 9, 75, 159
MluCI AATT 2 cut(s) 212, 391
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 128
MseI TTAA 1 cut(s) 394
MwoI GCNNNNNNNGC 1 cut(s) 89
NlaIII CATG 3 cut(s) 15, 58, 272
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 246, 358
NsiI ATGCAT 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 128
PfeI GAWTC 3 cut(s) 164, 208, 258
PflFI GACNNNGTC 1 cut(s) 13
Psp1406I AACGTT 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 373
PsyI GACNNNGTC 1 cut(s) 13
SaqAI TTAA 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 373
SetI ASST 2 cut(s) 130, 225
SfaNI GCATC 3 cut(s) 37, 59, 169
SinI GGWCC 1 cut(s) 373
Sse9I AATT 2 cut(s) 212, 391
StyI CCWWGG 1 cut(s) 376
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 256
TasI AATT 2 cut(s) 212, 391
TfiI GAWTC 3 cut(s) 164, 208, 258
Tru1I TTAA 1 cut(s) 394
Tru9I TTAA 1 cut(s) 394
TseFI GTSAC 2 cut(s) 246, 358
Tsp45I GTSAC 2 cut(s) 246, 358
TspDTI ATGAA 1 cut(s) 318
Tth111I GACNNNGTC 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 373
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.