Prupe.3G122200_v2.0.a1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
10877527 .. 10878647
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G122200.1

Sequence Viewer

Length: 1023 bp
ATGAAGTTCATTAAGCAGCTGTGGAGATGTGTTTGTTTGGTCTTGATCCTTATGTTGGGGACTTGGTCTAGTGAAGCCACTTCTCATAACCTCCAAGATGCATCAATGTACGAAAGATACGAACAATGGATGGTTCATTATGGACGTGAATATGATGATGTTAATGAGAAGCAGAAGCGTTTTGAGATATTCAAGAAGAATGTGGCATACATAGAATCCTCTAATAGCGATGTAAACAAATCTTACAAATTAAGTGTTAATCAATTTGCAGACCAAACGAATGAAGAAGTGAAAGCCTCAAGAAATGGATTCAAAGGGCGTGAATACTCCACAAAGACTACTTCTTTCAAATACGAAAACGTCACAGTAGTACCATCTACCATGGATTGGAGAAGCAAAGGAGCTGTAACGCCCGTGAAAGACCAAGGCCAATGTGGAAGCTGTTGGGCTTTTGCAGCAGTGGCAGCCGTTGAAGGAATTACACAACTTACAACTAGTAAATTAATCTCTTTGTCAGAGCAAGAGGTGGTTGACTGCGACATCAACGGCAAAGACCTAGGATGTGGTGGTGGCTACCCTGACGGCGCCTTTGAGTTCATCAATCAAAACCAAGGGATTAGCTCCGAGGCTAGTTACAACTACACAGGTGTGGACGGTAGATGCAACACCCAAGCAACTCATGCAGCCAATATAACTGGTTACGAAGATGTGCCTGCAAGCAACGAGGAAGCCCTTCTTAAGGCTGTTGCCAATCAACCTGTTTCTGTTTGCATTGATGCTGGAGAAAACGACTTCATGAACTATAAAAGTGGAGTCTTTACAGGATCATGTGGACTAGAAATCGATCATTGCGTTACTGCGATCGGTTACGGTGTCAGTGACGATGGCATAAAGTATTGGTTACTGAAAAACTCATGGGGAACGGAATGGGGTGAAGAAGGGTACATGAGGATGCAAAGAGATGTTTATGCAAAAGAAGGTCTTTGTGGCGTAGCTATGTTTGGATCTTACCCCATCGCATAA

Protein Analysis

341

Amino Acids

37.73

Weight (kDa)

4.88

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 584
AccB7I CCANNNNNTGG 1 cut(s) 387
AclWI GGATC 3 cut(s) 40, 832, 1012
AcyI GRCGYC 1 cut(s) 585
AfaI GTAC 3 cut(s) 110, 372, 944
AfiI CCNNNNNNNGG 3 cut(s) 55, 387, 739
AflII CTTAAG 1 cut(s) 737
AgsI TTSAA 4 cut(s) 193, 313, 349, 473
AhlI ACTAGT 1 cut(s) 494
AjiI CACGTC 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 647
AluBI AGCT 5 cut(s) 19, 404, 441, 621, 995
AluI AGCT 5 cut(s) 19, 404, 441, 621, 995
AlwI GGATC 3 cut(s) 40, 832, 1012
AoxI GGCC 1 cut(s) 427
ApeKI GCWGC 4 cut(s) 16, 455, 464, 683
ArsI GACNNNNNNTTYG 2 cut(s) 572, 604
AseI ATTAAT 1 cut(s) 503
Asp700I GAANNNNTTC 1 cut(s) 732
AspA2I CCTAGG 1 cut(s) 556
AspLEI GCGC 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 944
AvrII CCTAGG 1 cut(s) 556
BaeI ACNNNNGTAYC 2 cut(s) 354, 387
BanI GGYRCC 1 cut(s) 584
BbvI GCAGC 4 cut(s) 28, 467, 476, 695
BccI CCATC 4 cut(s) 124, 382, 878, 1022
BceAI ACGGC 3 cut(s) 452, 562, 598
BcuI ACTAGT 1 cut(s) 494
BfaI CTAG 5 cut(s) 69, 495, 557, 630, 836
BfoI RGCGCY 1 cut(s) 588
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 4 cut(s) 17, 456, 465, 684
BlnI CCTAGG 1 cut(s) 556
BlsI GCNGC 4 cut(s) 18, 457, 466, 685
BmgBI CACGTC 1 cut(s) 146
BmiI GGNNCC 1 cut(s) 586
BmsI GCATC 5 cut(s) 88, 110, 650, 766, 942
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 1 cut(s) 283
Bsa29I ATCGAT 1 cut(s) 843
BsaHI GRCGYC 1 cut(s) 585
BsaJI CCNNGG 5 cut(s) 381, 424, 556, 610, 624
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 387, 739
Bse1I ACTGG 1 cut(s) 700
Bse3DI GCAATG 1 cut(s) 847
BseCI ATCGAT 1 cut(s) 843
BseDI CCNNGG 5 cut(s) 381, 424, 556, 610, 624
BseGI GGATG 3 cut(s) 135, 566, 957
BseLI CCNNNNNNNGG 3 cut(s) 55, 387, 739
BseMI GCAATG 1 cut(s) 847
BseNI ACTGG 1 cut(s) 700
BseXI GCAGC 4 cut(s) 28, 467, 476, 695
Bsh1285I CGRYCG 1 cut(s) 864
BshFI GGCC 1 cut(s) 429
BshNI GGYRCC 1 cut(s) 584
BshVI ATCGAT 1 cut(s) 843
BsiEI CGRYCG 1 cut(s) 864
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 3 cut(s) 55, 387, 739
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 1 cut(s) 429
Bsp143I GATC 5 cut(s) 45, 824, 844, 861, 1004
Bsp19I CCATGG 1 cut(s) 381
BspANI GGCC 1 cut(s) 429
BspDI ATCGAT 1 cut(s) 843
BspHI TCATGA 1 cut(s) 795
BspLI GGNNCC 1 cut(s) 586
BspPI GGATC 3 cut(s) 40, 832, 1012
BspT107I GGYRCC 1 cut(s) 584
BspTI CTTAAG 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 847
BsrI ACTGG 1 cut(s) 700
BssECI CCNNGG 5 cut(s) 381, 424, 556, 610, 624
BssMI GATC 5 cut(s) 45, 824, 844, 861, 1004
BssNI GRCGYC 1 cut(s) 585
BssT1I CCWWGG 4 cut(s) 381, 424, 556, 610
Bst4CI ACNGT 3 cut(s) 367, 656, 872
BstACI GRCGYC 1 cut(s) 585
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 2 cut(s) 714, 718
BstDSI CCRYGG 1 cut(s) 381
BstENI CCTNNNNNAGG 1 cut(s) 737
BstF5I GGATG 3 cut(s) 135, 566, 957
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 1 cut(s) 587
BstKTI GATC 5 cut(s) 48, 827, 847, 864, 1007
BstMBI GATC 5 cut(s) 45, 824, 844, 861, 1004
BstMCI CGRYCG 1 cut(s) 864
BstMWI GCNNNNNNNGC 4 cut(s) 455, 461, 464, 680
BstV1I GCAGC 4 cut(s) 28, 467, 476, 695
BstX2I RGATCY 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 1004
Bsu15I ATCGAT 1 cut(s) 843
BsuRI GGCC 1 cut(s) 429
BsuTUI ATCGAT 1 cut(s) 843
BtgI CCRYGG 1 cut(s) 381
BtgZI GCGATG 2 cut(s) 243, 1000
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 135, 566, 957
BtsI GCAGTG 1 cut(s) 465
BtsIMutI CAGTG 2 cut(s) 465, 883
Cac8I GCNNGC 2 cut(s) 714, 718
CciI TCATGA 1 cut(s) 795
CfoI GCGC 1 cut(s) 587
ClaI ATCGAT 1 cut(s) 843
Csp6I GTAC 3 cut(s) 109, 371, 943
CviAII CATG 6 cut(s) 382, 680, 796, 828, 915, 946
CviQI GTAC 3 cut(s) 109, 371, 943
DinI GGCGCC 1 cut(s) 586
DpnI GATC 5 cut(s) 47, 826, 846, 863, 1006
DpnII GATC 5 cut(s) 45, 824, 844, 861, 1004
Eco130I CCWWGG 4 cut(s) 381, 424, 556, 610
EcoNI CCTNNNNNAGG 1 cut(s) 737
EcoT14I CCWWGG 4 cut(s) 381, 424, 556, 610
EcoT22I ATGCAT 1 cut(s) 103
EgeI GGCGCC 1 cut(s) 586
EheI GGCGCC 1 cut(s) 586
ErhI CCWWGG 4 cut(s) 381, 424, 556, 610
FaeI CATG 6 cut(s) 385, 683, 799, 831, 918, 949
FalI AAGNNNNNCTT 4 cut(s) 720, 752, 966, 998
FaqI GGGAC 1 cut(s) 73
FatI CATG 6 cut(s) 381, 679, 795, 827, 914, 945
Fnu4HI GCNGC 4 cut(s) 17, 456, 465, 684
FokI GGATG 3 cut(s) 142, 573, 964
Fsp4HI GCNGC 4 cut(s) 17, 456, 465, 684
FspBI CTAG 5 cut(s) 69, 495, 557, 630, 836
GlaI GCGC 1 cut(s) 586
GluI GCNGC 4 cut(s) 17, 456, 465, 684
GsuI CTGGAG 1 cut(s) 801
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 1 cut(s) 429
HhaI GCGC 1 cut(s) 587
Hin1I GRCGYC 1 cut(s) 585
Hin1II CATG 6 cut(s) 385, 683, 799, 831, 918, 949
Hin6I GCGC 1 cut(s) 585
HinP1I GCGC 1 cut(s) 585
HincII GTYRAC 1 cut(s) 532
HindII GTYRAC 1 cut(s) 532
HinfI GANTC 3 cut(s) 215, 309, 813
HphI GGTGA 1 cut(s) 944
Hpy166II GTNNAC 4 cut(s) 235, 532, 652, 833
Hpy188I TCNGA 2 cut(s) 517, 625
Hpy188III TCNNGA 4 cut(s) 43, 193, 300, 796
Hpy8I GTNNAC 4 cut(s) 235, 532, 652, 833
HpyAV CCTTC 4 cut(s) 467, 743, 932, 971
HpyCH4III ACNGT 3 cut(s) 367, 656, 872
HpyCH4IV ACGT 2 cut(s) 145, 360
HpyCH4V TGCA 9 cut(s) 101, 269, 455, 663, 683, 716, 771, 955, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 461, 464, 680
HpySE526I ACGT 2 cut(s) 145, 360
Hsp92I GRCGYC 1 cut(s) 585
Hsp92II CATG 6 cut(s) 385, 683, 799, 831, 918, 949
HspAI GCGC 1 cut(s) 585
KasI GGCGCC 1 cut(s) 584
Kzo9I GATC 5 cut(s) 45, 824, 844, 861, 1004
LmnI GCTCC 2 cut(s) 401, 626
LpnPI CCDG 7 cut(s) 591, 630, 681, 726, 765, 771, 807
Lsp1109I GCAGC 4 cut(s) 28, 467, 476, 695
LweI GCATC 5 cut(s) 88, 110, 650, 766, 942
MaeI CTAG 5 cut(s) 69, 495, 557, 630, 836
MaeII ACGT 2 cut(s) 145, 360
MaeIII GTNAC 8 cut(s) 361, 406, 632, 698, 853, 866, 878, 900
MalI GATC 5 cut(s) 47, 826, 846, 863, 1006
MboI GATC 5 cut(s) 45, 824, 844, 861, 1004
MboII GAAGA 4 cut(s) 208, 296, 716, 947
MflI RGATCY 1 cut(s) 1004
MluCI AATT 4 cut(s) 248, 263, 477, 500
Mly113I GGCGCC 1 cut(s) 585
MlyI GAGTC 1 cut(s) 822
MnlI CCTC 7 cut(s) 101, 229, 307, 517, 619, 718, 942
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 6 cut(s) 12, 162, 251, 258, 503, 738
MslI CAYNNNNRTG 2 cut(s) 647, 950
MspA1I CMGCKG 1 cut(s) 19
MspCI CTTAAG 1 cut(s) 737
MwoI GCNNNNNNNGC 4 cut(s) 455, 461, 464, 680
NarI GGCGCC 1 cut(s) 585
NcoI CCATGG 1 cut(s) 381
NdeII GATC 5 cut(s) 45, 824, 844, 861, 1004
NlaIII CATG 6 cut(s) 385, 683, 799, 831, 918, 949
NlaIV GGNNCC 1 cut(s) 586
NmuCI GTSAC 2 cut(s) 361, 878
NsiI ATGCAT 1 cut(s) 103
OliI CACNNNNGTG 1 cut(s) 647
PagI TCATGA 1 cut(s) 795
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 849
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 2 cut(s) 215, 309
PflFI GACNNNGTC 1 cut(s) 64
PflMI CCANNNNNTGG 1 cut(s) 387
PkrI GCNGC 4 cut(s) 18, 457, 466, 685
Ple19I CGATCG 1 cut(s) 864
PleI GAGTC 1 cut(s) 821
PluTI GGCGCC 1 cut(s) 588
PpsI GAGTC 1 cut(s) 821
PshBI ATTAAT 1 cut(s) 503
PspN4I GGNNCC 1 cut(s) 586
PsuI RGATCY 1 cut(s) 1004
PsyI GACNNNGTC 1 cut(s) 64
PvuI CGATCG 1 cut(s) 864
PvuII CAGCTG 1 cut(s) 19
RsaI GTAC 3 cut(s) 110, 372, 944
RsaNI GTAC 3 cut(s) 109, 371, 943
RseI CAYNNNNRTG 2 cut(s) 647, 950
SaqAI TTAA 6 cut(s) 12, 162, 251, 258, 503, 738
SatI GCNGC 4 cut(s) 17, 456, 465, 684
Sau3AI GATC 5 cut(s) 45, 824, 844, 861, 1004
SchI GAGTC 1 cut(s) 822
SfaNI GCATC 5 cut(s) 88, 110, 650, 766, 942
SfoI GGCGCC 1 cut(s) 586
SmiMI CAYNNNNRTG 2 cut(s) 647, 950
SmlI CTYRAG 2 cut(s) 298, 737
SmoI CTYRAG 2 cut(s) 298, 737
SpeI ACTAGT 1 cut(s) 494
Sse9I AATT 4 cut(s) 248, 263, 477, 500
SspDI GGCGCC 1 cut(s) 584
SspMI CTAG 5 cut(s) 69, 495, 557, 630, 836
StyI CCWWGG 4 cut(s) 381, 424, 556, 610
TaaI ACNGT 3 cut(s) 367, 656, 872
TaiI ACGT 2 cut(s) 148, 363
TaqI TCGA 1 cut(s) 843
TasI AATT 4 cut(s) 248, 263, 477, 500
TfiI GAWTC 2 cut(s) 215, 309
Tru1I TTAA 6 cut(s) 12, 162, 251, 258, 503, 738
Tru9I TTAA 6 cut(s) 12, 162, 251, 258, 503, 738
TscAI CASTG 2 cut(s) 465, 883
TseFI GTSAC 2 cut(s) 361, 878
TseI GCWGC 4 cut(s) 16, 455, 464, 683
Tsp45I GTSAC 2 cut(s) 361, 878
TspDTI ATGAA 6 cut(s) 17, 125, 297, 586, 784, 812
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 2 cut(s) 465, 883
Tth111I GACNNNGTC 1 cut(s) 64
Van91I CCANNNNNTGG 1 cut(s) 387
Vha464I CTTAAG 1 cut(s) 737
VspI ATTAAT 1 cut(s) 503
XagI CCTNNNNNAGG 1 cut(s) 737
XcmI CCANNNNNNNNNTGG 1 cut(s) 431
XmaJI CCTAGG 1 cut(s) 556
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 5 cut(s) 69, 495, 557, 630, 836
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.