Rroxscaffold_2G00114740

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
40874413 .. 40875456
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00114740.1

Sequence Viewer

Length: 924 bp
ATGTATGAGAGATACGAGCAATGGATGACTCGTTATGGACGCCAATACAGCAGCATGAATGAGAAGGAGACTCGCTTCAATGTATTCAAGAAAAATGTGGCAATGATTGATTCTTCGAATAGCGATGTAAACAAACCATACAAATTGAGCGTCAATCAATTTGCAGACCTTACAACTGAAGAATTCAAAGCCCAAAGGACAGGATTCAAGGGTCTTCGGGATACCACACAGCTGACTACCTCTTTCAAGTACGAAAATGTTAGCATAGTGCCATCTTCACTAGACTGGAGAACGAAAGGAGCTGTAATGCCTGTCAAGGACCAAGGAGCATGTGGAAGCTGTTGGGCTTTCGCAACAGTGGGAGCCTTGGAAGGAGCTCTTCAGCTTGCTACTGGTGAACTAGTCTCTATGTCTGAGCAAGAGTTGGTTGACTGTAACGTCGGAGGTGAGAATGAAGGCTGTAATGGTGGCTACCCCGACGTTGCCTTTCTGTACATCATAGAAAAGCACGGGCTTACGAACGAGGCTAATTATCCCTATACTGCTACGGATAATGTGTGCAATACTACAGAGGCAGACAGCCCTTCAGGTAGCATAACCGGCTACGAAGATGTGCCTGTAAACAGTGAAAAGGACCTTCTCAAGGCTGTTGCTAATCAACCTGTATCCGTTTGCATTCAAGCTGAGGGAGCATTCGCATCCTATTCATCTGGTGTGTTGACAGGAGATTGTGGAACGGACCTCGACCATTGTGTTACTGCTATTGGTTACGGAACAACTGATGAGGGGATCGATTATTGGTTGCTGAAAAACTCATGGGGCACAGATTGGGGTGAAGAAGGCTACGCTAGGATACAAAGAAATGTGGAGGCTGTGGAAGGAATGTGTGGCATTGCTACGTCAGCCTCTTACGCTATTGTGTAG

Protein Analysis

307

Amino Acids

33.51

Weight (kDa)

4.46

Isoelectric Point (pI)

23.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 5 - 62 8.2e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 90 - 306 5.6e-78 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 437
AclWI GGATC 1 cut(s) 797
AcsI RAATTY 1 cut(s) 182
AcuI CTGAAG 3 cut(s) 198, 365, 570
AcyI GRCGYC 1 cut(s) 40
AfaI GTAC 2 cut(s) 251, 494
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 6 cut(s) 79, 88, 187, 208, 247, 680
AhlI ACTAGT 1 cut(s) 400
AluBI AGCT 6 cut(s) 232, 302, 339, 377, 385, 683
AluI AGCT 6 cut(s) 232, 302, 339, 377, 385, 683
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 2 cut(s) 62, 409
AlwI GGATC 1 cut(s) 797
ApeKI GCWGC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 135, 167
AspS9I GGNCC 3 cut(s) 319, 634, 739
AsuHPI GGTGA 3 cut(s) 407, 458, 845
AsuII TTCGAA 1 cut(s) 116
AvaII GGWCC 3 cut(s) 319, 634, 739
BaeGI GKGCMC 1 cut(s) 824
BanII GRGCYC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 379
BbvCI CCTCAGC 1 cut(s) 684
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 280
BciVI GTATCC 3 cut(s) 214, 676, 846
BcoDI GTCTC 2 cut(s) 62, 409
BcuI ACTAGT 1 cut(s) 400
BfaI CTAG 3 cut(s) 281, 401, 849
BfmI CTRYAG 1 cut(s) 567
BfuI GTATCC 3 cut(s) 214, 676, 846
BisI GCNGC 1 cut(s) 52
BlsI GCNGC 1 cut(s) 53
Bme18I GGWCC 3 cut(s) 319, 634, 739
BmgT120I GGNCC 3 cut(s) 319, 634, 739
BmiI GGNNCC 1 cut(s) 364
BmsI GCATC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 307
Bpu10I CCTNAGC 1 cut(s) 684
Bpu14I TTCGAA 1 cut(s) 116
BpuEI CTTGAG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 792
BsaHI GRCGYC 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 322, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse118I RCCGGY 1 cut(s) 599
Bse1I ACTGG 2 cut(s) 290, 397
Bse3DI GCAATG 3 cut(s) 26, 108, 891
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 2 cut(s) 322, 366
BseGI GGATG 2 cut(s) 30, 698
BseLI CCNNNNNNNGG 1 cut(s) 643
BseMI GCAATG 3 cut(s) 26, 108, 891
BseMII CTCAG 2 cut(s) 405, 675
BseNI ACTGG 2 cut(s) 290, 397
BseSI GKGCMC 1 cut(s) 824
BseXI GCAGC 1 cut(s) 63
BshVI ATCGAT 1 cut(s) 792
BsiHKAI GWGCWC 1 cut(s) 379
BsiSI CCGG 1 cut(s) 600
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 62, 409
BsmI GAATGC 2 cut(s) 675, 692
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 379, 824
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 1 cut(s) 789
BspCNI CTCAG 2 cut(s) 406, 676
BspDI ATCGAT 1 cut(s) 792
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 797
BspQI GCTCTTC 1 cut(s) 384
BspT104I TTCGAA 1 cut(s) 116
BsrDI GCAATG 3 cut(s) 26, 108, 891
BsrFI RCCGGY 1 cut(s) 599
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 2 cut(s) 290, 397
BssAI RCCGGY 1 cut(s) 599
BssECI CCNNGG 2 cut(s) 322, 366
BssMI GATC 1 cut(s) 789
BssNI GRCGYC 1 cut(s) 40
BssT1I CCWWGG 2 cut(s) 322, 366
Bst4CI ACNGT 3 cut(s) 358, 434, 626
Bst6I CTCTTC 1 cut(s) 384
BstACI GRCGYC 1 cut(s) 40
BstAUI TGTACA 1 cut(s) 492
BstBI TTCGAA 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 414, 684
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 2 cut(s) 30, 698
BstKTI GATC 1 cut(s) 792
BstMAI GTCTC 2 cut(s) 62, 409
BstMBI GATC 1 cut(s) 789
BstMWI GCNNNNNNNGC 5 cut(s) 48, 600, 689, 902, 911
BstNSI RCATGY 1 cut(s) 333
BstSFI CTRYAG 1 cut(s) 567
BstSLI GKGCMC 1 cut(s) 824
BstV1I GCAGC 1 cut(s) 63
BstV2I GAAGAC 1 cut(s) 206
Bsu15I ATCGAT 1 cut(s) 792
BsuI GTATCC 3 cut(s) 214, 676, 846
BsuTUI ATCGAT 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 138
BtsCI GGATG 2 cut(s) 30, 698
BtsIMutI CAGTG 2 cut(s) 363, 631
Cac8I GCNNGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 599
Cfr13I GGNCC 3 cut(s) 319, 634, 739
ClaI ATCGAT 1 cut(s) 792
CseI GACGC 2 cut(s) 48, 139
Csp6I GTAC 2 cut(s) 250, 493
CviAII CATG 3 cut(s) 55, 330, 816
CviQI GTAC 2 cut(s) 250, 493
DdeI CTNAG 2 cut(s) 414, 684
DpnI GATC 1 cut(s) 791
DpnII GATC 1 cut(s) 789
DrdI GACNNNNNNGTC 1 cut(s) 437
DseDI GACNNNNNNGTC 1 cut(s) 437
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 2 cut(s) 322, 366
Eco24I GRGCYC 1 cut(s) 379
Eco47I GGWCC 3 cut(s) 319, 634, 739
Eco53kI GAGCTC 1 cut(s) 377
Eco57I CTGAAG 3 cut(s) 198, 365, 570
EcoICRI GAGCTC 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 2 cut(s) 322, 366
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 2 cut(s) 322, 366
FaeI CATG 3 cut(s) 58, 333, 819
FalI AAGNNNNNCTT 2 cut(s) 363, 395
FatI CATG 3 cut(s) 54, 329, 815
Fnu4HI GCNGC 1 cut(s) 52
FokI GGATG 2 cut(s) 37, 685
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 52
FspBI CTAG 3 cut(s) 281, 401, 849
GluI GCNGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 307
HapII CCGG 1 cut(s) 600
HgaI GACGC 2 cut(s) 48, 139
Hin1I GRCGYC 1 cut(s) 40
Hin1II CATG 3 cut(s) 58, 333, 819
HincII GTYRAC 2 cut(s) 430, 720
HindII GTYRAC 2 cut(s) 430, 720
HinfI GANTC 4 cut(s) 28, 70, 110, 204
HpaII CCGG 1 cut(s) 600
HphI GGTGA 3 cut(s) 407, 458, 845
Hpy166II GTNNAC 5 cut(s) 130, 398, 430, 622, 720
Hpy188I TCNGA 2 cut(s) 415, 443
Hpy188III TCNNGA 2 cut(s) 88, 218
Hpy8I GTNNAC 5 cut(s) 130, 398, 430, 622, 720
Hpy99I CGWCG 2 cut(s) 443, 482
HpyAV CCTTC 7 cut(s) 58, 365, 449, 594, 647, 833, 872
HpyCH4III ACNGT 3 cut(s) 358, 434, 626
HpyCH4IV ACGT 3 cut(s) 438, 480, 899
HpyCH4V TGCA 3 cut(s) 164, 561, 675
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 600, 689, 902, 911
HpyF3I CTNAG 2 cut(s) 414, 684
HpySE526I ACGT 3 cut(s) 438, 480, 899
Hsp92I GRCGYC 1 cut(s) 40
Hsp92II CATG 3 cut(s) 58, 333, 819
Kzo9I GATC 1 cut(s) 789
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 299, 326, 362, 374, 689
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 1 cut(s) 707
MaeI CTAG 3 cut(s) 281, 401, 849
MaeII ACGT 3 cut(s) 438, 480, 899
MaeIII GTNAC 3 cut(s) 434, 754, 767
MalI GATC 1 cut(s) 791
MboI GATC 1 cut(s) 789
MboII GAAGA 7 cut(s) 105, 191, 206, 267, 371, 620, 848
MhlI GDGCHC 2 cut(s) 379, 824
MluCI AATT 4 cut(s) 143, 158, 182, 529
MlyI GAGTC 2 cut(s) 22, 64
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 9 cut(s) 250, 437, 517, 565, 679, 752, 778, 862, 916
MspA1I CMGCKG 1 cut(s) 232
MspI CCGG 1 cut(s) 600
Mva1269I GAATGC 2 cut(s) 675, 692
MwoI GCNNNNNNNGC 5 cut(s) 48, 600, 689, 902, 911
NdeII GATC 1 cut(s) 789
NlaIII CATG 3 cut(s) 58, 333, 819
NlaIV GGNNCC 1 cut(s) 364
NspI RCATGY 1 cut(s) 333
NspV TTCGAA 1 cut(s) 116
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 2 cut(s) 675, 692
PfeI GAWTC 2 cut(s) 110, 204
PkrI GCNGC 1 cut(s) 53
PleI GAGTC 2 cut(s) 22, 64
PpsI GAGTC 2 cut(s) 22, 64
PpuMI RGGWCCY 1 cut(s) 634
Psp124BI GAGCTC 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 634
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 3 cut(s) 319, 634, 739
PspPPI RGGWCCY 1 cut(s) 634
PvuII CAGCTG 1 cut(s) 232
RsaI GTAC 2 cut(s) 251, 494
RsaNI GTAC 2 cut(s) 250, 493
SacI GAGCTC 1 cut(s) 379
SapI GCTCTTC 1 cut(s) 384
SatI GCNGC 1 cut(s) 52
Sau3AI GATC 1 cut(s) 789
Sau96I GGNCC 3 cut(s) 319, 634, 739
SchI GAGTC 2 cut(s) 22, 64
SduI GDGCHC 2 cut(s) 379, 824
SfaNI GCATC 1 cut(s) 707
SfcI CTRYAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 116
SinI GGWCC 3 cut(s) 319, 634, 739
SmlI CTYRAG 1 cut(s) 641
SmoI CTYRAG 1 cut(s) 641
SpeI ACTAGT 1 cut(s) 400
Sse9I AATT 4 cut(s) 143, 158, 182, 529
SspMI CTAG 3 cut(s) 281, 401, 849
SstI GAGCTC 1 cut(s) 379
StyI CCWWGG 2 cut(s) 322, 366
TaaI ACNGT 3 cut(s) 358, 434, 626
TaiI ACGT 3 cut(s) 441, 483, 902
TaqI TCGA 3 cut(s) 116, 744, 792
TasI AATT 4 cut(s) 143, 158, 182, 529
TatI WGTACW 1 cut(s) 492
TfiI GAWTC 2 cut(s) 110, 204
TscAI CASTG 2 cut(s) 363, 631
TseI GCWGC 1 cut(s) 51
TspDTI ATGAA 3 cut(s) 71, 468, 696
TspGWI ACGGA 4 cut(s) 563, 658, 752, 786
TspRI CASTG 2 cut(s) 363, 631
VpaK11BI GGWCC 3 cut(s) 319, 634, 739
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 3 cut(s) 281, 401, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.