Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

46048546 .. 46049066

Gene Structure 521 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGACCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCGGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTTGTTGACTGTGATGTCAAAGGTGTAGACCAAGGCTGTGCAGGTGGCCTTATGGACGATGCCTTTCAGTTTGTCATTCAAAATCATGGTATAAATATTGAGGCTAATTATCCCTACACGGCTGCGGATGGTACATGCAATGCCAAGAAGGAAGCAAGCCATGCAGCCACAATAACTGGCCCCGAAGATGTGCCTGCAAACAGCGAAAGCGCCCTTCTTAAGGTCGTGGCTAATCAACATATCTCTGTTGCTATTGATGCTAGTGGATCTGACTTCCAGTTCTATTCAAGTGGTGTTTACACAGGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

139

Amino Acids

14.45

Weight (kDa)

4.18

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	2 - 138	2.4e-47	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
AasI	GACNNNNNNGTC	1 cut(s)	122
Acc36I	ACCTGC	1 cut(s)	140
AccI	GTMKAC	1 cut(s)	135
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	382
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	328
AflII	CTTAAG	1 cut(s)	326
AgsI	TTSAA	2 cut(s)	188, 396
AluBI	AGCT	2 cut(s)	50, 109
AluI	AGCT	2 cut(s)	50, 109
AlwI	GGATC	1 cut(s)	382
AoxI	GGCC	3 cut(s)	10, 154, 286
ApeKI	GCWGC	2 cut(s)	230, 272
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	2 cut(s)	4, 287
AvaII	GGWCC	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	217, 284
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	243
BfaI	CTAG	1 cut(s)	369
BfoI	RGCGCY	1 cut(s)	321
BfrI	CTTAAG	1 cut(s)	326
BfuAI	ACCTGC	1 cut(s)	140
BisI	GCNGC	2 cut(s)	231, 273
BlsI	GCNGC	2 cut(s)	232, 274
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	2 cut(s)	4, 287
BmiI	GGNNCC	1 cut(s)	289
BmsI	GCATC	2 cut(s)	157, 355
BsaJI	CCNNGG	2 cut(s)	7, 139
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse1I	ACTGG	3 cut(s)	82, 289, 385
Bse3DI	GCAATG	1 cut(s)	253
BseDI	CCNNGG	2 cut(s)	7, 139
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	3 cut(s)	82, 289, 385
BseXI	GCAGC	2 cut(s)	217, 284
BsgI	GTGCAG	1 cut(s)	168
BshFI	GGCC	3 cut(s)	12, 156, 288
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmI	GAATGC	1 cut(s)	32
BsnI	GGCC	3 cut(s)	12, 156, 288
Bsp143I	GATC	1 cut(s)	374
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	12, 156, 288
BspCNI	CTCAG	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	289
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	382
BspTI	CTTAAG	1 cut(s)	326
BsrDI	GCAATG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	82, 289, 385
BssECI	CCNNGG	2 cut(s)	7, 139
BssMI	GATC	1 cut(s)	374
BssT1I	CCWWGG	2 cut(s)	7, 139
Bst4CI	ACNGT	1 cut(s)	119
BstAFI	CTTAAG	1 cut(s)	326
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstC8I	GCNNGC	2 cut(s)	265, 303
BstDEI	CTNAG	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	241
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	1 cut(s)	377
BstMBI	GATC	1 cut(s)	374
BstMWI	GCNNNNNNNGC	4 cut(s)	38, 47, 269, 365
BstNSI	RCATGY	1 cut(s)	246
BstV1I	GCAGC	2 cut(s)	217, 284
BstX2I	RGATCY	1 cut(s)	374
BstYI	RGATCY	1 cut(s)	374
BsuRI	GGCC	3 cut(s)	12, 156, 288
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	1 cut(s)	48
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	265, 303
CfoI	GCGC	1 cut(s)	320
Cfr13I	GGNCC	2 cut(s)	4, 287
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	4 cut(s)	194, 243, 269, 417
CviQI	GTAC	1 cut(s)	240
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	1 cut(s)	376
DpnII	GATC	1 cut(s)	374
DrdI	GACNNNNNNGTC	1 cut(s)	122
DseDI	GACNNNNNNGTC	1 cut(s)	122
Eco130I	CCWWGG	2 cut(s)	7, 139
Eco47I	GGWCC	1 cut(s)	4
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	7, 139
ErhI	CCWWGG	2 cut(s)	7, 139
FaeI	CATG	4 cut(s)	197, 246, 272, 420
FaiI	YATR	8 cut(s)	53, 161, 195, 200, 244, 270, 348, 418
FatI	CATG	4 cut(s)	193, 242, 268, 416
FblI	GTMKAC	1 cut(s)	135
Fnu4HI	GCNGC	2 cut(s)	231, 273
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	2 cut(s)	231, 273
FspBI	CTAG	1 cut(s)	369
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	2 cut(s)	231, 273
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	3 cut(s)	12, 156, 288
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	197, 246, 272, 420
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	1 cut(s)	60
Hpy166II	GTNNAC	4 cut(s)	83, 115, 136, 406
Hpy188I	TCNGA	2 cut(s)	100, 379
Hpy8I	GTNNAC	4 cut(s)	83, 115, 136, 406
HpyAV	CCTTC	3 cut(s)	50, 250, 332
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	4 cut(s)	149, 246, 272, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	38, 47, 269, 365
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	197, 246, 272, 420
HspAI	GCGC	1 cut(s)	318
Kzo9I	GATC	1 cut(s)	374
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	6 cut(s)	63, 135, 270, 315, 396, 398
Lsp1109I	GCAGC	2 cut(s)	217, 284
LweI	GCATC	2 cut(s)	157, 355
MaeI	CTAG	1 cut(s)	369
MalI	GATC	1 cut(s)	376
MboI	GATC	1 cut(s)	374
MboII	GAAGA	1 cut(s)	305
MflI	RGATCY	1 cut(s)	374
MluCI	AATT	1 cut(s)	214
MnlI	CCTC	1 cut(s)	202
MseI	TTAA	1 cut(s)	327
MspCI	CTTAAG	1 cut(s)	326
Mva1269I	GAATGC	1 cut(s)	32
MwoI	GCNNNNNNNGC	4 cut(s)	38, 47, 269, 365
NdeII	GATC	1 cut(s)	374
NlaIII	CATG	4 cut(s)	197, 246, 272, 420
NlaIV	GGNNCC	1 cut(s)	289
NmeAIII	GCCGAG	1 cut(s)	17
NspI	RCATGY	1 cut(s)	246
PaqCI	CACCTGC	1 cut(s)	140
PctI	GAATGC	1 cut(s)	32
PfeI	GAWTC	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	232, 274
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	2 cut(s)	4, 287
PsuI	RGATCY	1 cut(s)	374
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	2 cut(s)	231, 273
Sau3AI	GATC	1 cut(s)	374
Sau96I	GGNCC	2 cut(s)	4, 287
SetI	ASST	5 cut(s)	52, 111, 133, 154, 333
SfaNI	GCATC	2 cut(s)	157, 355
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	214
SsiI	CCGC	1 cut(s)	233
SspI	AATATT	1 cut(s)	205
SspMI	CTAG	1 cut(s)	369
StyI	CCWWGG	2 cut(s)	7, 139
TaaI	ACNGT	1 cut(s)	119
TasI	AATT	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	60
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	2 cut(s)	230, 272
TspRI	CASTG	1 cut(s)	48
Vha464I	CTTAAG	1 cut(s)	326
VpaK11BI	GGWCC	1 cut(s)	4
XagI	CCTNNNNNAGG	1 cut(s)	326
XceI	RCATGY	1 cut(s)	246
XcmI	CCANNNNNNNNNTGG	1 cut(s)	14
XmiI	GTMKAC	1 cut(s)	135
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.