Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

60831795 .. 60834892

Gene Structure 3098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51322

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGAGTTCACCAACCTCGGAAAATGTCTTTGTTTGGCTTTGATCCTCGTCATGTTTGGAGCTTGGTCTTCTGAAGCCACTTCTCGCACTCTCCAAGATGCATCAATGTATGGGAGATACAAGCAATGGATGGATCATTATGGACGTGTCTATAATGAGATCAATGAAAAGAAGAAGCGCTTCCAGATATTCAAGGAAAATGTAGCATTTGTAGAATCATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGTCAATCAATTTGCAGACCTTACAAATGAAGAATTCATTGCCTCTAGAAATCGAATCAAGGGGCATGAATGTTCCACAAAGACCACATCTTTCAAGTATGAAAATGTTACTGTGCCAGCTACTGTGGACTGGAGACAGAAAGGAGCTGTAACCCCAATCAAGGATCAAGGCCAATGTGACAGTGAAGAGCTGTGGTGTGGGAGATGCCGAGGAGCTGGACGTATGGGGTTGTCCTGCAGCGCCTTCGCTACGACGGTAGCTTCTCGCCTCGTCGGACGGGCCAGAAGCTGGGTTCTCTCTCTCTTTCAACTGGGATCATGTTGGGCTTTCTCAGCTGTGGCAACCATGGAAGGAATCACTCAACTTTCAACAGGTAAACTTATCTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTGAATGGTGGAGACCAAGGTTGTGAGGGTGGCTTGATCGACAATGCCTTTGAGTTCATCGATCAAAATCATGGACTTAGTACTGAAGCTAATTACCCCTACACCGGTGTTGATGGTACATGCAATGCCCAGAAGGAAGCCAGCCATGCAGCCTCGATAACTGGTCACGAAGATGTGCCGGCAAATAATGAAAGTGCCCTTCTTAAGGCCGTCGCTAATCAACCCATTTCCGTTGCCATTGATGCTAGTAGTTCGGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACTTGCGGAACAAGCGGTTTGCCATTGATGCTAAACCATGGTGTTACCGCAGTAGGTTATGGCGTCAGTGATGATAGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATCAGAATGCAAAGAGATGTTGCTGAGAAGGAAGGTCTGTGTGGTATTGCTATGGCAGCCTCTTATCCCACTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

391

Amino Acids

42.71

Weight (kDa)

5.31

Isoelectric Point (pI)

25.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	2.4e-19	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	190 - 390	3e-70	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	543
AciI	CCGC	3 cut(s)	969, 978, 1011
AclWI	GGATC	4 cut(s)	37, 141, 426, 577
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	2 cut(s)	93, 777
AcyI	GRCGYC	1 cut(s)	1026
AfaI	GTAC	3 cut(s)	754, 790, 1097
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	4 cut(s)	415, 543, 776, 877
AflII	CTTAAG	1 cut(s)	875
AflIII	ACRYGT	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	193, 349, 563, 624, 945
AjiI	CACGTC	1 cut(s)	146
Alw26I	GTCTC	2 cut(s)	382, 678
AlwI	GGATC	4 cut(s)	37, 141, 426, 577
AlwNI	CAGNNNCTG	2 cut(s)	377, 543
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	3 cut(s)	424, 534, 879
ApeKI	GCWGC	3 cut(s)	492, 821, 1154
ApoI	RAATTY	1 cut(s)	287
ArsI	GACNNNNNNTTYG	4 cut(s)	240, 272, 704, 736
AsiGI	ACCGGT	1 cut(s)	776
Asp700I	GAANNNNTTC	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	180, 497
AspS9I	GGNCC	1 cut(s)	534
AsuHPI	GGTGA	1 cut(s)	1097
BaeGI	GKGCMC	2 cut(s)	871, 1078
BbsI	GAAGAC	1 cut(s)	60
BbvI	GCAGC	3 cut(s)	504, 833, 1166
BccI	CCATC	2 cut(s)	124, 779
BceAI	ACGGC	1 cut(s)	866
BcgI	CGANNNNNNTGC	2 cut(s)	481, 515
BcoDI	GTCTC	2 cut(s)	382, 678
BfaI	CTAG	3 cut(s)	300, 659, 918
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	2 cut(s)	181, 498
BfrI	CTTAAG	1 cut(s)	875
BisI	GCNGC	3 cut(s)	493, 822, 1155
BlsI	GCNGC	3 cut(s)	494, 823, 1156
BmcAI	AGTACT	1 cut(s)	754
BmgBI	CACGTC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	534
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	6 cut(s)	88, 110, 220, 449, 904, 981
BmuI	ACTGGG	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	406
Bsa29I	ATCGAT	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	1026
BsaI	GGTCTC	1 cut(s)	678
BsaJI	CCNNGG	5 cut(s)	16, 463, 600, 688, 1000
BsaWI	WCCGGW	1 cut(s)	776
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 543, 776, 877
Bse118I	RCCGGY	2 cut(s)	776, 850
Bse1I	ACTGG	3 cut(s)	389, 570, 838
Bse3DI	GCAATG	3 cut(s)	131, 291, 802
Bse8I	GATNNNNATC	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	5 cut(s)	16, 463, 600, 688, 1000
BseGI	GGATG	2 cut(s)	135, 218
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	4 cut(s)	415, 543, 776, 877
BseMI	GCAATG	3 cut(s)	131, 291, 802
BseMII	CTCAG	3 cut(s)	600, 639, 1113
BseNI	ACTGG	3 cut(s)	389, 570, 838
BseRI	GAGGAG	1 cut(s)	480
BseSI	GKGCMC	2 cut(s)	871, 1078
BseXI	GCAGC	3 cut(s)	504, 833, 1166
BseYI	CCCAGC	1 cut(s)	543
BshFI	GGCC	3 cut(s)	426, 536, 881
BshTI	ACCGGT	1 cut(s)	776
BshVI	ATCGAT	1 cut(s)	732
BsiSI	CCGG	2 cut(s)	777, 851
BslI	CCNNNNNNNGG	4 cut(s)	415, 543, 776, 877
BsmAI	GTCTC	2 cut(s)	382, 678
BsmI	GAATGC	1 cut(s)	1110
BsnI	GGCC	3 cut(s)	426, 536, 881
Bso31I	GGTCTC	1 cut(s)	678
Bsp1286I	GDGCHC	2 cut(s)	871, 1078
Bsp143I	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
Bsp19I	CCATGG	2 cut(s)	600, 1000
BspACI	CCGC	3 cut(s)	969, 978, 1011
BspANI	GGCC	3 cut(s)	426, 536, 881
BspCNI	CTCAG	3 cut(s)	599, 640, 1114
BspDI	ATCGAT	1 cut(s)	732
BspMAI	CTGCAG	1 cut(s)	494
BspPI	GGATC	4 cut(s)	37, 141, 426, 577
BspQI	GCTCTTC	1 cut(s)	435
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	1 cut(s)	678
BsrDI	GCAATG	3 cut(s)	131, 291, 802
BsrFI	RCCGGY	2 cut(s)	776, 850
BsrI	ACTGG	3 cut(s)	389, 570, 838
BssAI	RCCGGY	2 cut(s)	776, 850
BssECI	CCNNGG	5 cut(s)	16, 463, 600, 688, 1000
BssMI	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
BssNI	GRCGYC	1 cut(s)	1026
BssT1I	CCWWGG	3 cut(s)	600, 688, 1000
Bst4CI	ACNGT	5 cut(s)	367, 379, 437, 511, 668
Bst6I	CTCTTC	1 cut(s)	435
BstACI	GRCGYC	1 cut(s)	1026
BstAFI	CTTAAG	1 cut(s)	875
BstC8I	GCNNGC	4 cut(s)	235, 372, 814, 852
BstDEI	CTNAG	5 cut(s)	586, 648, 749, 1044, 1122
BstDSI	CCRYGG	2 cut(s)	600, 1000
BstENI	CCTNNNNNAGG	1 cut(s)	875
BstF5I	GGATG	2 cut(s)	135, 218
BstH2I	RGCGCY	2 cut(s)	181, 498
BstHHI	GCGC	2 cut(s)	180, 497
BstKTI	GATC	7 cut(s)	45, 136, 162, 421, 572, 711, 736
BstMAI	GTCTC	2 cut(s)	382, 678
BstMBI	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	587, 818, 914, 975, 991, 1154
BstNSI	RCATGY	1 cut(s)	795
BstSFI	CTRYAG	1 cut(s)	490
BstSLI	GKGCMC	2 cut(s)	871, 1078
BstV1I	GCAGC	3 cut(s)	504, 833, 1166
BstV2I	GAAGAC	1 cut(s)	60
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	426, 536, 881
BsuTUI	ATCGAT	1 cut(s)	732
BtgI	CCRYGG	2 cut(s)	600, 1000
BtrI	CACGTC	1 cut(s)	146
BtsCI	GGATG	2 cut(s)	135, 218
BtsIMutI	CAGTG	2 cut(s)	442, 1036
Cac8I	GCNNGC	4 cut(s)	235, 372, 814, 852
CaiI	CAGNNNCTG	2 cut(s)	377, 543
CfoI	GCGC	2 cut(s)	180, 497
Cfr10I	RCCGGY	2 cut(s)	776, 850
Cfr13I	GGNCC	1 cut(s)	534
ClaI	ATCGAT	1 cut(s)	732
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	3 cut(s)	753, 789, 1096
CspAI	ACCGGT	1 cut(s)	776
CviAII	CATG	9 cut(s)	52, 320, 573, 601, 743, 792, 818, 1001, 1068
CviQI	GTAC	3 cut(s)	753, 789, 1096
DdeI	CTNAG	5 cut(s)	586, 648, 749, 1044, 1122
DpnI	GATC	7 cut(s)	44, 135, 161, 420, 571, 710, 735
DpnII	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Eco130I	CCWWGG	3 cut(s)	600, 688, 1000
Eco31I	GGTCTC	1 cut(s)	678
Eco47III	AGCGCT	1 cut(s)	179
Eco57I	CTGAAG	2 cut(s)	93, 777
EcoNI	CCTNNNNNAGG	1 cut(s)	875
EcoRI	GAATTC	1 cut(s)	287
EcoT14I	CCWWGG	3 cut(s)	600, 688, 1000
EcoT22I	ATGCAT	1 cut(s)	103
ErhI	CCWWGG	3 cut(s)	600, 688, 1000
FaeI	CATG	9 cut(s)	55, 323, 576, 604, 746, 795, 821, 1004, 1071
FalI	AAGNNNNNCTT	4 cut(s)	164, 196, 226, 258
FatI	CATG	9 cut(s)	51, 319, 572, 600, 742, 791, 817, 1000, 1067
Fnu4HI	GCNGC	3 cut(s)	493, 822, 1155
FokI	GGATG	2 cut(s)	142, 205
Fsp4HI	GCNGC	3 cut(s)	493, 822, 1155
FspBI	CTAG	3 cut(s)	300, 659, 918
GlaI	GCGC	2 cut(s)	179, 496
GluI	GCNGC	3 cut(s)	493, 822, 1155
GsaI	CCCAGC	1 cut(s)	547
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	2 cut(s)	181, 498
HaeIII	GGCC	3 cut(s)	426, 536, 881
HapII	CCGG	2 cut(s)	777, 851
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	2 cut(s)	180, 497
Hin1I	GRCGYC	1 cut(s)	1026
Hin1II	CATG	9 cut(s)	55, 323, 576, 604, 746, 795, 821, 1004, 1071
Hin6I	GCGC	2 cut(s)	178, 495
HinP1I	GCGC	2 cut(s)	178, 495
HincII	GTYRAC	1 cut(s)	664
HindII	GTYRAC	1 cut(s)	664
HinfI	GANTC	3 cut(s)	215, 309, 609
HpaII	CCGG	2 cut(s)	777, 851
HphI	GGTGA	1 cut(s)	1097
Hpy166II	GTNNAC	4 cut(s)	9, 382, 632, 664
Hpy188I	TCNGA	6 cut(s)	20, 73, 530, 649, 928, 1103
Hpy188III	TCNNGA	3 cut(s)	184, 300, 839
Hpy8I	GTNNAC	4 cut(s)	9, 382, 632, 664
Hpy99I	CGWCG	3 cut(s)	511, 530, 887
HpyAV	CCTTC	7 cut(s)	508, 599, 799, 881, 1085, 1120, 1124
HpyCH4III	ACNGT	5 cut(s)	367, 379, 437, 511, 668
HpyCH4IV	ACGT	2 cut(s)	145, 475
HpyCH4V	TGCA	7 cut(s)	101, 233, 269, 492, 795, 821, 1108
HpyF10VI	GCNNNNNNNGC	6 cut(s)	587, 818, 914, 975, 991, 1154
HpyF3I	CTNAG	5 cut(s)	586, 648, 749, 1044, 1122
HpySE526I	ACGT	2 cut(s)	145, 475
Hsp92I	GRCGYC	1 cut(s)	1026
Hsp92II	CATG	9 cut(s)	55, 323, 576, 604, 746, 795, 821, 1004, 1071
HspAI	GCGC	2 cut(s)	178, 495
KroI	GCCGGC	1 cut(s)	850
KroNI	GCCGGC	1 cut(s)	852
Kzo9I	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	3 cut(s)	59, 398, 467
Lsp1109I	GCAGC	3 cut(s)	504, 833, 1166
LweI	GCATC	6 cut(s)	88, 110, 220, 449, 904, 981
MaeI	CTAG	3 cut(s)	300, 659, 918
MaeII	ACGT	2 cut(s)	145, 475
MaeIII	GTNAC	5 cut(s)	361, 403, 431, 836, 1006
MalI	GATC	7 cut(s)	44, 135, 161, 420, 571, 710, 735
MboI	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
MboII	GAAGA	6 cut(s)	60, 184, 296, 452, 854, 1100
MhlI	GDGCHC	2 cut(s)	871, 1078
MluCI	AATT	5 cut(s)	248, 263, 287, 763, 935
MmeI	TCCRAC	2 cut(s)	246, 508
MnlI	CCTC	8 cut(s)	26, 56, 307, 458, 533, 691, 835, 1168
Mph1103I	ATGCAT	1 cut(s)	103
MroNI	GCCGGC	1 cut(s)	850
MroXI	GAANNNNTTC	1 cut(s)	179
MseI	TTAA	3 cut(s)	251, 876, 1059
MslI	CAYNNNNRTG	2 cut(s)	843, 1103
MspA1I	CMGCKG	1 cut(s)	590
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	2 cut(s)	777, 851
Mva1269I	GAATGC	1 cut(s)	1110
MwoI	GCNNNNNNNGC	6 cut(s)	587, 818, 914, 975, 991, 1154
NaeI	GCCGGC	1 cut(s)	852
NcoI	CCATGG	2 cut(s)	600, 1000
NdeII	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
NgoMIV	GCCGGC	1 cut(s)	850
NlaIII	CATG	9 cut(s)	55, 323, 576, 604, 746, 795, 821, 1004, 1071
NmeAIII	GCCGAG	1 cut(s)	488
NmuCI	GTSAC	2 cut(s)	431, 836
NsiI	ATGCAT	1 cut(s)	103
NspI	RCATGY	1 cut(s)	795
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	1 cut(s)	1110
PdiI	GCCGGC	1 cut(s)	852
PdmI	GAANNNNTTC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	215, 309, 609
PflMI	CCANNNNNTGG	1 cut(s)	543
PinAI	ACCGGT	1 cut(s)	776
PkrI	GCNGC	3 cut(s)	494, 823, 1156
PspFI	CCCAGC	1 cut(s)	543
PspPI	GGNCC	1 cut(s)	534
PstI	CTGCAG	1 cut(s)	494
PstNI	CAGNNNCTG	2 cut(s)	377, 543
PvuII	CAGCTG	1 cut(s)	590
RsaI	GTAC	3 cut(s)	754, 790, 1097
RsaNI	GTAC	3 cut(s)	753, 789, 1096
RseI	CAYNNNNRTG	2 cut(s)	843, 1103
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	251, 876, 1059
SatI	GCNGC	3 cut(s)	493, 822, 1155
Sau3AI	GATC	7 cut(s)	42, 133, 159, 418, 569, 708, 733
Sau96I	GGNCC	1 cut(s)	534
ScaI	AGTACT	1 cut(s)	754
SduI	GDGCHC	2 cut(s)	871, 1078
SfaNI	GCATC	6 cut(s)	88, 110, 220, 449, 904, 981
SfcI	CTRYAG	1 cut(s)	490
SgrAI	CRCCGGYG	1 cut(s)	776
SmiMI	CAYNNNNRTG	2 cut(s)	843, 1103
SmlI	CTYRAG	1 cut(s)	875
SmoI	CTYRAG	1 cut(s)	875
Sse9I	AATT	5 cut(s)	248, 263, 287, 763, 935
SsiI	CCGC	3 cut(s)	969, 978, 1011
SspMI	CTAG	3 cut(s)	300, 659, 918
StyI	CCWWGG	3 cut(s)	600, 688, 1000
TaaI	ACNGT	5 cut(s)	367, 379, 437, 511, 668
TaiI	ACGT	2 cut(s)	148, 478
TaqI	TCGA	4 cut(s)	307, 711, 732, 827
TasI	AATT	5 cut(s)	248, 263, 287, 763, 935
TatI	WGTACW	1 cut(s)	752
TfiI	GAWTC	3 cut(s)	215, 309, 609
Tru1I	TTAA	3 cut(s)	251, 876, 1059
Tru9I	TTAA	3 cut(s)	251, 876, 1059
TscAI	CASTG	2 cut(s)	442, 1036
TseFI	GTSAC	2 cut(s)	431, 836
TseI	GCWGC	3 cut(s)	492, 821, 1154
Tsp45I	GTSAC	2 cut(s)	431, 836
TspDTI	ATGAA	7 cut(s)	180, 280, 297, 336, 369, 718, 876
TspGWI	ACGGA	1 cut(s)	892
TspRI	CASTG	2 cut(s)	442, 1036
Van91I	CCANNNNNTGG	1 cut(s)	543
Vha464I	CTTAAG	1 cut(s)	875
XagI	CCTNNNNNAGG	1 cut(s)	875
XapI	RAATTY	1 cut(s)	287
XbaI	TCTAGA	1 cut(s)	299
XceI	RCATGY	1 cut(s)	795
XmnI	GAANNNNTTC	1 cut(s)	179
XspI	CTAG	3 cut(s)	300, 659, 918
ZrmI	AGTACT	1 cut(s)	754
Zsp2I	ATGCAT	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.