Rroxscaffold_2G00102090

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
24121929 .. 24122273
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00102090.1

Sequence Viewer

Length: 345 bp
ATGGAGTTCACCAACCTCGGAAAATGTCTATGTTTCGCTTTGATCCTCTTGATATGTGGAGCTTGGTCTGCTGAAGCCACTTCTCGCACACTCCAAGATGCATCAATGTATGGGAGATATGAGCAATGGATGGCTGGTTATGGACGTGTCTATGAAGAGATCAACGAGAAGGAGAAGCGCTTCCAAATATTTAAGGAAAATGTAGCATTTGTAGAATTATCCAACAATGATGCAAGCAAACCTTACAAATTAAGTGCCAATCAATTTGCAGACCTTACAAATGAAGAATTCATTGCCTCAAGAAATCGATTCAATTGCCTCGAGAAATCGATTCAAGCGACATGA

Protein Analysis

114

Amino Acids

13.13

Weight (kDa)

5.2

Isoelectric Point (pI)

27.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 97 4.3e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 93
AfeI AGCGCT 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 2 cut(s) 313, 335
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
AlwI GGATC 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 320
Aor51HI AGCGCT 1 cut(s) 179
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 179
AspLEI GCGC 1 cut(s) 180
AvaI CYCGRG 1 cut(s) 320
BccI CCATC 1 cut(s) 124
BcgI CGANNNNNNTGC 2 cut(s) 297, 331
BfoI RGCGCY 1 cut(s) 181
BmeT110I CYCGRG 1 cut(s) 320
BmgBI CACGTC 1 cut(s) 146
BmsI GCATC 3 cut(s) 88, 110, 220
BpuEI CTTGAG 1 cut(s) 283
Bsa29I ATCGAT 2 cut(s) 307, 329
BsaJI CCNNGG 1 cut(s) 16
Bse3DI GCAATG 2 cut(s) 131, 291
BseCI ATCGAT 2 cut(s) 307, 329
BseDI CCNNGG 1 cut(s) 16
BseGI GGATG 1 cut(s) 135
BseMI GCAATG 2 cut(s) 131, 291
BshVI ATCGAT 2 cut(s) 307, 329
BsiHKCI CYCGRG 1 cut(s) 320
BsoBI CYCGRG 1 cut(s) 320
Bsp143I GATC 2 cut(s) 42, 159
BspDI ATCGAT 2 cut(s) 307, 329
BspPI GGATC 1 cut(s) 37
BsrDI GCAATG 2 cut(s) 131, 291
BssECI CCNNGG 1 cut(s) 16
BssMI GATC 2 cut(s) 42, 159
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 235
BstF5I GGATG 1 cut(s) 135
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 2 cut(s) 45, 162
BstMBI GATC 2 cut(s) 42, 159
BstMWI GCNNNNNNNGC 1 cut(s) 68
Bsu15I ATCGAT 2 cut(s) 307, 329
BsuTUI ATCGAT 2 cut(s) 307, 329
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 235
CfoI GCGC 1 cut(s) 180
ClaI ATCGAT 2 cut(s) 307, 329
CviAII CATG 1 cut(s) 342
CviJI RGCY 3 cut(s) 62, 77, 134
CviKI_1 RGCY 3 cut(s) 62, 77, 134
DpnI GATC 2 cut(s) 44, 161
DpnII GATC 2 cut(s) 42, 159
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47III AGCGCT 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 93
Eco88I CYCGRG 1 cut(s) 320
EcoRI GAATTC 1 cut(s) 287
EcoT22I ATGCAT 1 cut(s) 103
FaeI CATG 1 cut(s) 345
FaiI YATR 7 cut(s) 31, 55, 111, 120, 141, 153, 343
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FatI CATG 1 cut(s) 341
FokI GGATG 1 cut(s) 142
GlaI GCGC 1 cut(s) 179
HaeII RGCGCY 1 cut(s) 181
HhaI GCGC 1 cut(s) 180
Hin1II CATG 1 cut(s) 345
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 2 cut(s) 309, 331
Hpy166II GTNNAC 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 3 cut(s) 49, 300, 322
Hpy8I GTNNAC 1 cut(s) 9
HpyAV CCTTC 1 cut(s) 163
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 3 cut(s) 101, 233, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 1 cut(s) 345
HspAI GCGC 1 cut(s) 178
Kzo9I GATC 2 cut(s) 42, 159
LmnI GCTCC 1 cut(s) 59
LpnPI CCDG 1 cut(s) 120
LweI GCATC 3 cut(s) 88, 110, 220
MaeII ACGT 1 cut(s) 145
MalI GATC 2 cut(s) 44, 161
MboI GATC 2 cut(s) 42, 159
MboII GAAGA 2 cut(s) 167, 296
MfeI CAATTG 1 cut(s) 313
MluCI AATT 5 cut(s) 215, 248, 263, 287, 313
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 4 cut(s) 26, 56, 307, 329
Mph1103I ATGCAT 1 cut(s) 103
MroXI GAANNNNTTC 1 cut(s) 179
MseI TTAA 2 cut(s) 192, 251
MunI CAATTG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 2 cut(s) 42, 159
NlaIII CATG 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 103
PaeR7I CTCGAG 1 cut(s) 320
PcsI WCGNNNNNNNCGW 1 cut(s) 335
PdmI GAANNNNTTC 1 cut(s) 179
PfeI GAWTC 2 cut(s) 309, 331
SaqAI TTAA 2 cut(s) 192, 251
Sau3AI GATC 2 cut(s) 42, 159
SetI ASST 5 cut(s) 18, 64, 148, 244, 276
SfaNI GCATC 3 cut(s) 88, 110, 220
Sfr274I CTCGAG 1 cut(s) 320
SlaI CTCGAG 1 cut(s) 320
SmlI CTYRAG 2 cut(s) 298, 320
SmoI CTYRAG 2 cut(s) 298, 320
Sse9I AATT 5 cut(s) 215, 248, 263, 287, 313
SspI AATATT 1 cut(s) 189
TaiI ACGT 1 cut(s) 148
TaqI TCGA 3 cut(s) 307, 321, 329
TasI AATT 5 cut(s) 215, 248, 263, 287, 313
TfiI GAWTC 2 cut(s) 309, 331
Tru1I TTAA 2 cut(s) 192, 251
Tru9I TTAA 2 cut(s) 192, 251
TspDTI ATGAA 3 cut(s) 168, 280, 297
XapI RAATTY 1 cut(s) 287
XhoI CTCGAG 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.