Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

58054658 .. 58071006

Gene Structure 16349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCGTTCATGTCTAGCTTCCGTCGCGTTCTTGGTGGATCGGGATCTGCTCTTCCATCCCAATTCGCTGCCATTCGTCACAATACAACCCTCACATCCCTAAGCTATTCATCAGCGGGTAAAGTGAAGGTGGAGATTTGTGGAGTGCTAGATACTGAAAAATTTGAAGAGCTGGATTTTACTGAAGATGGCCCGATCAACCTTTGTTTCGTCGCGTTTGTGGAGAATCAGAAACTGTGGAACGATGCTGTTGGGCTTTCTCAGCAGTACGTGGCAGCCATGGAAGGAGTCACTCAACTTACTACAGATAAACTAATGTCTTTGTCCGAGCAAGAGCTGGTTGACTGTGATGTGAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAACGCATTTGAGTTCATCAATCAAAATCATGGACTTGGTACTGAGGCTAATTACCCCTACACTGGTGTTGATGGTACATGCAATGCCCAGAAGGAAGCAAGCCATGCAGCCTCAATAACTGGTCACGAAGATGTGCCTGCAAATAGTGAAAGTTCCCTTCTTAAGGCCGTCGCCAATCAACCCATTTCTGTTGCCATTGATGCTAGTGGATCTGATTTCCAATTCTATTCAAGTGGTGTATTCACAGGAACTTGTGGAACAAGCCTAGACCATGGTTTTACTGCTGTTGGTTATGGAATGACCTATTTCTACGAGGAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

239

Amino Acids

25.58

Weight (kDa)

4.33

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	91 - 232	8.8e-43	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	27, 215
AciI	CCGC	1 cut(s)	116
AclWI	GGATC	3 cut(s)	46, 52, 610
AcsI	RAATTY	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	269, 433, 469
AfiI	CCNNNNNNNGG	2 cut(s)	455, 556
AflII	CTTAAG	1 cut(s)	554
AgsI	TTSAA	2 cut(s)	167, 624
AluBI	AGCT	4 cut(s)	18, 105, 172, 337
AluI	AGCT	4 cut(s)	18, 105, 172, 337
AlwI	GGATC	3 cut(s)	46, 52, 610
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	2 cut(s)	190, 558
ApeKI	GCWGC	3 cut(s)	68, 275, 500
ApoI	RAATTY	1 cut(s)	161
ArsI	GACNNNNNNTTYG	2 cut(s)	383, 415
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	55, 287, 512
BccI	CCATC	4 cut(s)	64, 182, 382, 458
BceAI	ACGGC	1 cut(s)	545
BfaI	CTAG	4 cut(s)	15, 149, 597, 659
BfmI	CTRYAG	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	554
BisI	GCNGC	3 cut(s)	69, 276, 501
BlsI	GCNGC	3 cut(s)	70, 277, 502
BmgT120I	GGNCC	1 cut(s)	191
BmsI	GCATC	2 cut(s)	235, 583
BpiI	GAAGAC	1 cut(s)	369
Bpu10I	CCTNAGC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	43
BsaJI	CCNNGG	3 cut(s)	279, 367, 664
BsaXI	ACNNNNNCTCC	1 cut(s)	701
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 556
Bse1I	ACTGG	2 cut(s)	460, 517
Bse3DI	GCAATG	1 cut(s)	481
Bse8I	GATNNNNATC	1 cut(s)	43
BseDI	CCNNGG	3 cut(s)	279, 367, 664
BseGI	GGATG	2 cut(s)	56, 95
BseJI	GATNNNNATC	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	455, 556
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	2 cut(s)	275, 426
BseNI	ACTGG	2 cut(s)	460, 517
BseXI	GCAGC	3 cut(s)	55, 287, 512
Bsh1236I	CGCG	2 cut(s)	27, 215
BshFI	GGCC	2 cut(s)	192, 560
BslI	CCNNNNNNNGG	2 cut(s)	455, 556
BsnI	GGCC	2 cut(s)	192, 560
Bsp143I	GATC	4 cut(s)	38, 44, 195, 602
Bsp19I	CCATGG	2 cut(s)	279, 664
BspACI	CCGC	1 cut(s)	116
BspANI	GGCC	2 cut(s)	192, 560
BspCNI	CTCAG	2 cut(s)	274, 427
BspFNI	CGCG	2 cut(s)	27, 215
BspPI	GGATC	3 cut(s)	46, 52, 610
BspQI	GCTCTTC	2 cut(s)	57, 162
BspTI	CTTAAG	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	2 cut(s)	460, 517
BssECI	CCNNGG	3 cut(s)	279, 367, 664
BssMI	GATC	4 cut(s)	38, 44, 195, 602
BssT1I	CCWWGG	3 cut(s)	279, 367, 664
Bst4CI	ACNGT	2 cut(s)	237, 347
Bst6I	CTCTTC	2 cut(s)	57, 162
BstAFI	CTTAAG	1 cut(s)	554
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	2 cut(s)	493, 531
BstDEI	CTNAG	3 cut(s)	101, 261, 435
BstDSI	CCRYGG	2 cut(s)	279, 664
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	56, 95
BstFNI	CGCG	2 cut(s)	27, 215
BstKTI	GATC	4 cut(s)	41, 47, 198, 605
BstMBI	GATC	4 cut(s)	38, 44, 195, 602
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 262, 497, 593
BstNSI	RCATGY	1 cut(s)	474
BstSFI	CTRYAG	1 cut(s)	303
BstUI	CGCG	2 cut(s)	27, 215
BstV1I	GCAGC	3 cut(s)	55, 287, 512
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	44, 602
BstYI	RGATCY	2 cut(s)	44, 602
BsuRI	GGCC	2 cut(s)	192, 560
BtgI	CCRYGG	2 cut(s)	279, 664
BtsCI	GGATG	2 cut(s)	56, 95
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	493, 531
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	268, 432, 468
CviAII	CATG	6 cut(s)	10, 280, 422, 471, 497, 665
CviQI	GTAC	3 cut(s)	268, 432, 468
DdeI	CTNAG	3 cut(s)	101, 261, 435
DpnI	GATC	4 cut(s)	40, 46, 197, 604
DpnII	GATC	4 cut(s)	38, 44, 195, 602
Eam1104I	CTCTTC	2 cut(s)	57, 162
EarI	CTCTTC	2 cut(s)	57, 162
Eco130I	CCWWGG	3 cut(s)	279, 367, 664
Eco57I	CTGAAG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoT14I	CCWWGG	3 cut(s)	279, 367, 664
ErhI	CCWWGG	3 cut(s)	279, 367, 664
FaeI	CATG	6 cut(s)	13, 283, 425, 474, 500, 668
FaiI	YATR	7 cut(s)	11, 281, 423, 472, 498, 666, 687
FatI	CATG	6 cut(s)	9, 279, 421, 470, 496, 664
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	69, 276, 501
FokI	GGATG	2 cut(s)	43, 82
Fsp4HI	GCNGC	3 cut(s)	69, 276, 501
FspBI	CTAG	4 cut(s)	15, 149, 597, 659
GluI	GCNGC	3 cut(s)	69, 276, 501
HaeIII	GGCC	2 cut(s)	192, 560
Hin1II	CATG	6 cut(s)	13, 283, 425, 474, 500, 668
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	226, 288
HphI	GGTGA	1 cut(s)	371
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	3 cut(s)	231, 328, 607
Hpy188III	TCNNGA	2 cut(s)	42, 518
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	3 cut(s)	27, 215, 566
HpyAV	CCTTC	4 cut(s)	121, 278, 478, 560
HpyCH4III	ACNGT	2 cut(s)	237, 347
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	474, 500, 533
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 262, 497, 593
HpyF3I	CTNAG	3 cut(s)	101, 261, 435
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	6 cut(s)	13, 283, 425, 474, 500, 668
Kzo9I	GATC	4 cut(s)	38, 44, 195, 602
LguI	GCTCTTC	2 cut(s)	57, 162
LpnPI	CCDG	7 cut(s)	158, 323, 441, 494, 498, 543, 624
Lsp1109I	GCAGC	3 cut(s)	55, 287, 512
LweI	GCATC	2 cut(s)	235, 583
MaeI	CTAG	4 cut(s)	15, 149, 597, 659
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	3 cut(s)	77, 289, 515
MalI	GATC	4 cut(s)	40, 46, 197, 604
MboI	GATC	4 cut(s)	38, 44, 195, 602
MboII	GAAGA	5 cut(s)	44, 179, 197, 374, 533
MflI	RGATCY	2 cut(s)	44, 602
MluCI	AATT	4 cut(s)	62, 161, 442, 614
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	5 cut(s)	101, 370, 430, 514, 700
MseI	TTAA	1 cut(s)	555
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	1 cut(s)	116
MspCI	CTTAAG	1 cut(s)	554
MvnI	CGCG	2 cut(s)	27, 215
MwoI	GCNNNNNNNGC	4 cut(s)	24, 262, 497, 593
NcoI	CCATGG	2 cut(s)	279, 664
NdeII	GATC	4 cut(s)	38, 44, 195, 602
NlaIII	CATG	6 cut(s)	13, 283, 425, 474, 500, 668
NmuCI	GTSAC	3 cut(s)	77, 289, 515
NspI	RCATGY	1 cut(s)	474
PciSI	GCTCTTC	2 cut(s)	57, 162
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	70, 277, 502
PleI	GAGTC	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	296
Ppu21I	YACGTR	1 cut(s)	271
PspPI	GGNCC	1 cut(s)	191
PstNI	CAGNNNCTG	1 cut(s)	235
PsuI	RGATCY	2 cut(s)	44, 602
RsaI	GTAC	3 cut(s)	269, 433, 469
RsaNI	GTAC	3 cut(s)	268, 432, 468
RseI	CAYNNNNRTG	1 cut(s)	522
SapI	GCTCTTC	2 cut(s)	57, 162
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	3 cut(s)	69, 276, 501
Sau3AI	GATC	4 cut(s)	38, 44, 195, 602
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	297
SetI	ASST	9 cut(s)	20, 107, 132, 174, 204, 273, 339, 373, 698
SfaNI	GCATC	2 cut(s)	235, 583
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	1 cut(s)	522
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	62, 161, 442, 614
SsiI	CCGC	1 cut(s)	116
SspMI	CTAG	4 cut(s)	15, 149, 597, 659
StyI	CCWWGG	3 cut(s)	279, 367, 664
TaaI	ACNGT	2 cut(s)	237, 347
TaiI	ACGT	1 cut(s)	273
TasI	AATT	4 cut(s)	62, 161, 442, 614
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	3 cut(s)	77, 289, 515
TseI	GCWGC	3 cut(s)	68, 275, 500
Tsp45I	GTSAC	3 cut(s)	77, 289, 515
TspDTI	ATGAA	2 cut(s)	99, 397
TspGWI	ACGGA	1 cut(s)	11
TspRI	CASTG	1 cut(s)	460
Vha464I	CTTAAG	1 cut(s)	554
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	1 cut(s)	474
XspI	CTAG	4 cut(s)	15, 149, 597, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.