Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

42397905 .. 42398354

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00115860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGAGTTCATCAACCAGTTCAAATGTATCTGTTTGGCCTTGATCCTCATGCTAGGGGTTTGGTCTTCTGAAGCCGCTTACCGCAGTCTCCAAGATGTAATGATGTATGGGAGATACGAACAATGGATGGCTCGTTATGGACGTGTATATAGTGACATTGCCGAGAAGGAGAAGCGCTTCCAAATATTCAAGGACAATGTAGCCTTTATAGAATCTTCCAATGACGAAGCAAACAAACCTTACAAATTAAGTGTCAATAGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTCAAGGGGCATGAATGTTCAACAAAGACCACTTCTTTCAAATATGAAAATGTTACCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTGACTCCCATCAAGGACCAAGGCCAATGTGGTATGTATTTAATCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

149

Amino Acids

17.39

Weight (kDa)

8.31

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	2.3e-20	Cathepsin propeptide inhibitor domain (I29)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	75, 82
AclWI	GGATC	1 cut(s)	37
AcuI	CTGAAG	1 cut(s)	90
AfeI	AGCGCT	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	22, 190, 310, 327, 346
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	2 cut(s)	371, 398
AluI	AGCT	2 cut(s)	371, 398
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	2 cut(s)	36, 421
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	415
AvaII	GGWCC	1 cut(s)	415
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	2 cut(s)	121, 416
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	2 cut(s)	53, 448
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	1 cut(s)	75
BlsI	GCNGC	1 cut(s)	76
Bme18I	GGWCC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	1 cut(s)	418
Bse1I	ACTGG	2 cut(s)	16, 386
Bse3DI	GCAATG	1 cut(s)	156
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	132
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	16, 386
BshFI	GGCC	2 cut(s)	38, 423
BshVI	ATCGAT	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	38, 423
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	2 cut(s)	75, 82
BspANI	GGCC	2 cut(s)	38, 423
BspDI	ATCGAT	1 cut(s)	304
BspPI	GGATC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	16, 386
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	418
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	369
BstF5I	GGATG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	42
BstV2I	GAAGAC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	38, 423
BsuTUI	ATCGAT	1 cut(s)	304
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	304
CviAII	CATG	2 cut(s)	49, 317
CviJI	RGCY	8 cut(s)	38, 74, 131, 203, 293, 371, 398, 423
CviKI_1	RGCY	8 cut(s)	38, 74, 131, 203, 293, 371, 398, 423
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	1 cut(s)	418
Eco47I	GGWCC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	418
ErhI	CCWWGG	1 cut(s)	418
FaeI	CATG	2 cut(s)	52, 320
FaiI	YATR	9 cut(s)	50, 108, 138, 148, 150, 209, 318, 351, 434
FatI	CATG	2 cut(s)	48, 316
Fnu4HI	GCNGC	1 cut(s)	75
FokI	GGATG	1 cut(s)	139
Fsp4HI	GCNGC	1 cut(s)	75
FspBI	CTAG	2 cut(s)	53, 448
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	75
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	38, 423
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	2 cut(s)	52, 320
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	212, 306, 403
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	266
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	2 cut(s)	52, 320
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	3 cut(s)	29, 367, 381
MaeI	CTAG	2 cut(s)	53, 448
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	152, 358, 400
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	3 cut(s)	57, 207, 293
MluCI	AATT	1 cut(s)	245
MlyI	GAGTC	1 cut(s)	397
MnlI	CCTC	3 cut(s)	56, 304, 378
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	2 cut(s)	248, 440
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	52, 320
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	152, 400
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	212, 306
PkrI	GCNGC	1 cut(s)	76
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	415
SaqAI	TTAA	2 cut(s)	248, 440
SatI	GCNGC	1 cut(s)	75
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	397
SetI	ASST	5 cut(s)	145, 241, 273, 373, 400
SinI	GGWCC	1 cut(s)	415
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	2 cut(s)	75, 82
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	2 cut(s)	53, 448
StyI	CCWWGG	1 cut(s)	418
TaaI	ACNGT	1 cut(s)	364
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	304
TasI	AATT	1 cut(s)	245
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	2 cut(s)	212, 306
Tru1I	TTAA	2 cut(s)	248, 440
Tru9I	TTAA	2 cut(s)	248, 440
TseFI	GTSAC	2 cut(s)	152, 400
Tsp45I	GTSAC	2 cut(s)	152, 400
TspDTI	ATGAA	3 cut(s)	294, 333, 366
VpaK11BI	GGWCC	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	53, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.