Rw2G027970

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
44531803 .. 44532942
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G027970.1

Sequence Viewer

Length: 1023 bp
ATGGAGTTCACCAACCAACTCTGCAACTGTATCTGTTTGGCCTTGATCCTCATGCTGGGGGTTTGGTCTTCTGAGGCCACTTCTCGCAATCTCCAAGATGCATCAATGTATGAGAGGTACGAGCAATGGATGGCTCATTATGGACGTGTTTATAATGACATGACCGAAAAGGAGGACCGCTTCAAAATATTCAAGGACAATGTGGCATTTATAGAATCTTCCAATAATGCAGGAAACAAACTTTACAAATTGAGTGTGAATCAATTTGCAGACCTTACGAATGAAGAATTCACTACTGCAAGAAATCGGTTCAAGGGGCATGAGTGCTCCACAAAGACCACTTTCAAGTATGAAAATGCTAGCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGGATGTTGTTGGGCGTTCTCAGCCGTGGCAGCCATGGAAGGAATTACTCAACTTACAACTGGTAAATTGATTTCTTTGTCTGAGCAAGAGCTGGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGTGGCTTGATGGACGATGCCTTTCAGTTCATCAATCAAAATCATGGACTCAGTACCGAAGCTAATTATCCATACACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAGACCATGCAGCCTCAATCACAGGCCACGAAGATGTGCCTGCAAATAGTGAAAGTGCACTTCTTAAGGCCGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCCGATTTCCAGTTCTACTCAAGTGGTGTTTTCACAGGAACCTGTGGAACTAGCCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGCTAGCAATGATGGGACTAAGTACTGGCTGGTGAAGAACTCATGGGGTGAACAATGGGGTGAAGAAGGCTACATAAGGATGCAAAGAGATGTTTCTGCACCAGAAGGTCTCTGTGGCATTGCCATGGAAGCTTCCTATCCCACTGCATAA

Protein Analysis

340

Amino Acids

37.25

Weight (kDa)

4.63

Isoelectric Point (pI)

21.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 97 1.1e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 122 - 339 3.3e-85 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
AasI GACNNNNNNGTC 1 cut(s) 533
AccB7I CCANNNNNTGG 1 cut(s) 638
AciI CCGC 2 cut(s) 178, 858
AclWI GGATC 3 cut(s) 40, 780, 793
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 4 cut(s) 119, 616, 652, 896
AfiI CCNNNNNNNGG 2 cut(s) 55, 638
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 184, 193, 313, 346
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 5 cut(s) 371, 398, 520, 623, 1004
AluI AGCT 5 cut(s) 371, 398, 520, 623, 1004
Alw21I GWGCWC 2 cut(s) 329, 733
Alw26I GTCTC 1 cut(s) 986
Alw44I GTGCAC 1 cut(s) 729
AlwI GGATC 3 cut(s) 40, 780, 793
AoxI GGCC 5 cut(s) 39, 75, 421, 697, 741
ApaLI GTGCAC 1 cut(s) 729
ApeKI GCWGC 2 cut(s) 458, 683
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 2 cut(s) 175, 415
AsuHPI GGTGA 4 cut(s) 554, 916, 932, 944
AsuNHI GCTAGC 2 cut(s) 359, 875
AvaII GGWCC 2 cut(s) 175, 415
BaeGI GKGCMC 1 cut(s) 733
BamHI GGATCC 1 cut(s) 785
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 2 cut(s) 329, 733
BbvI GCAGC 2 cut(s) 470, 695
BccI CCATC 5 cut(s) 124, 416, 565, 641, 878
BceAI ACGGC 2 cut(s) 437, 728
BcoDI GTCTC 1 cut(s) 986
BfaI CTAG 5 cut(s) 360, 780, 837, 842, 876
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 2 cut(s) 459, 684
BlsI GCNGC 2 cut(s) 460, 685
BmcAI AGTACT 1 cut(s) 896
Bme18I GGWCC 2 cut(s) 175, 415
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 2 cut(s) 175, 415
BmiI GGNNCC 2 cut(s) 787, 826
BmsI GCATC 5 cut(s) 88, 110, 568, 766, 942
BmtI GCTAGC 2 cut(s) 363, 879
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 403
BpuEI CTTGAG 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 986
BsaJI CCNNGG 5 cut(s) 418, 453, 462, 847, 996
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 638
Bse1I ACTGG 5 cut(s) 386, 493, 643, 796, 902
Bse3DI GCAATG 4 cut(s) 131, 664, 886, 990
BseDI CCNNGG 5 cut(s) 418, 453, 462, 847, 996
BseGI GGATG 3 cut(s) 135, 437, 957
BseLI CCNNNNNNNGG 2 cut(s) 55, 638
BseMI GCAATG 4 cut(s) 131, 664, 886, 990
BseMII CTCAG 4 cut(s) 63, 462, 501, 625
BseNI ACTGG 5 cut(s) 386, 493, 643, 796, 902
BseSI GKGCMC 1 cut(s) 733
BseXI GCAGC 2 cut(s) 470, 695
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 954
BshFI GGCC 5 cut(s) 41, 77, 423, 699, 743
BsiHKAI GWGCWC 2 cut(s) 329, 733
BslFI GGGAC 1 cut(s) 901
BslI CCNNNNNNNGG 2 cut(s) 55, 638
BsmAI GTCTC 1 cut(s) 986
BsmFI GGGAC 1 cut(s) 901
BsnI GGCC 5 cut(s) 41, 77, 423, 699, 743
Bso31I GGTCTC 1 cut(s) 986
Bsp1286I GDGCHC 2 cut(s) 329, 733
Bsp143I GATC 3 cut(s) 45, 547, 785
Bsp19I CCATGG 3 cut(s) 462, 847, 996
BspACI CCGC 2 cut(s) 178, 858
BspANI GGCC 5 cut(s) 41, 77, 423, 699, 743
BspCNI CTCAG 4 cut(s) 64, 461, 502, 624
BspLI GGNNCC 2 cut(s) 787, 826
BspOI GCTAGC 2 cut(s) 363, 879
BspPI GGATC 3 cut(s) 40, 780, 793
BspTI CTTAAG 1 cut(s) 737
BspTNI GGTCTC 1 cut(s) 986
BsrDI GCAATG 4 cut(s) 131, 664, 886, 990
BsrI ACTGG 5 cut(s) 386, 493, 643, 796, 902
BssECI CCNNGG 5 cut(s) 418, 453, 462, 847, 996
BssMI GATC 3 cut(s) 45, 547, 785
BssT1I CCWWGG 4 cut(s) 418, 462, 847, 996
Bst4CI ACNGT 2 cut(s) 29, 530
BstAFI CTTAAG 1 cut(s) 737
BstAPI GCANNNNNTGC 1 cut(s) 680
BstC8I GCNNGC 5 cut(s) 361, 365, 369, 714, 877
BstDEI CTNAG 5 cut(s) 72, 448, 510, 611, 891
BstDSI CCRYGG 4 cut(s) 453, 462, 847, 996
BstF5I GGATG 3 cut(s) 135, 437, 957
BstKTI GATC 3 cut(s) 48, 550, 788
BstMAI GTCTC 1 cut(s) 986
BstMBI GATC 3 cut(s) 45, 547, 785
BstMWI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
BstNSI RCATGY 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 733
BstV1I GCAGC 2 cut(s) 470, 695
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 785
BstYI RGATCY 1 cut(s) 785
BsuRI GGCC 5 cut(s) 41, 77, 423, 699, 743
BtgI CCRYGG 4 cut(s) 453, 462, 847, 996
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 3 cut(s) 135, 437, 957
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 2 cut(s) 636, 1014
Cac8I GCNNGC 5 cut(s) 361, 365, 369, 714, 877
Cfr13I GGNCC 2 cut(s) 175, 415
Csp6I GTAC 4 cut(s) 118, 615, 651, 895
CviQI GTAC 4 cut(s) 118, 615, 651, 895
DdeI CTNAG 5 cut(s) 72, 448, 510, 611, 891
DpnI GATC 3 cut(s) 47, 549, 787
DpnII GATC 3 cut(s) 45, 547, 785
DrdI GACNNNNNNGTC 1 cut(s) 533
DseDI GACNNNNNNGTC 1 cut(s) 533
Eco130I CCWWGG 4 cut(s) 418, 462, 847, 996
Eco31I GGTCTC 1 cut(s) 986
Eco47I GGWCC 2 cut(s) 175, 415
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 4 cut(s) 418, 462, 847, 996
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 4 cut(s) 418, 462, 847, 996
FaqI GGGAC 1 cut(s) 901
Fnu4HI GCNGC 2 cut(s) 459, 684
FokI GGATG 3 cut(s) 142, 444, 964
Fsp4HI GCNGC 2 cut(s) 459, 684
FspBI CTAG 5 cut(s) 360, 780, 837, 842, 876
GluI GCNGC 2 cut(s) 459, 684
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 403
HaeIII GGCC 5 cut(s) 41, 77, 423, 699, 743
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 1 cut(s) 1002
HinfI GANTC 3 cut(s) 215, 259, 609
HphI GGTGA 4 cut(s) 554, 916, 932, 944
Hpy166II GTNNAC 4 cut(s) 9, 526, 731, 923
Hpy188I TCNGA 3 cut(s) 73, 511, 790
Hpy8I GTNNAC 4 cut(s) 9, 526, 731, 923
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 4 cut(s) 461, 661, 932, 971
HpyCH4III ACNGT 2 cut(s) 29, 530
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
HpyF3I CTNAG 5 cut(s) 72, 448, 510, 611, 891
HpySE526I ACGT 1 cut(s) 145
Kzo9I GATC 3 cut(s) 45, 547, 785
LmnI GCTCC 2 cut(s) 332, 395
Lsp1109I GCAGC 2 cut(s) 470, 695
LweI GCATC 5 cut(s) 88, 110, 568, 766, 942
MaeI CTAG 5 cut(s) 360, 780, 837, 842, 876
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 400, 853
MalI GATC 3 cut(s) 47, 549, 787
MboI GATC 3 cut(s) 45, 547, 785
MboII GAAGA 7 cut(s) 60, 210, 296, 557, 716, 919, 947
MflI RGATCY 1 cut(s) 785
MhlI GDGCHC 2 cut(s) 329, 733
MluCI AATT 6 cut(s) 248, 263, 287, 471, 494, 625
MlyI GAGTC 1 cut(s) 603
MnlI CCTC 7 cut(s) 59, 67, 108, 166, 378, 553, 697
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 1 cut(s) 738
MslI CAYNNNNRTG 3 cut(s) 705, 950, 995
MspA1I CMGCKG 1 cut(s) 860
MspCI CTTAAG 1 cut(s) 737
MwoI GCNNNNNNNGC 5 cut(s) 449, 458, 680, 776, 1001
NcoI CCATGG 3 cut(s) 462, 847, 996
NdeII GATC 3 cut(s) 45, 547, 785
NheI GCTAGC 2 cut(s) 359, 875
NlaIV GGNNCC 2 cut(s) 787, 826
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 657
PfeI GAWTC 2 cut(s) 215, 259
PflMI CCANNNNNTGG 1 cut(s) 638
PkrI GCNGC 2 cut(s) 460, 685
PleI GAGTC 1 cut(s) 603
PpsI GAGTC 1 cut(s) 603
PsiI TTATAA 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 787, 826
PspPI GGNCC 2 cut(s) 175, 415
PsuI RGATCY 1 cut(s) 785
RsaI GTAC 4 cut(s) 119, 616, 652, 896
RsaNI GTAC 4 cut(s) 118, 615, 651, 895
RseI CAYNNNNRTG 3 cut(s) 705, 950, 995
SaqAI TTAA 1 cut(s) 738
SatI GCNGC 2 cut(s) 459, 684
Sau3AI GATC 3 cut(s) 45, 547, 785
Sau96I GGNCC 2 cut(s) 175, 415
ScaI AGTACT 1 cut(s) 896
SchI GAGTC 1 cut(s) 603
SduI GDGCHC 2 cut(s) 329, 733
SfaNI GCATC 5 cut(s) 88, 110, 568, 766, 942
SinI GGWCC 2 cut(s) 175, 415
SmiMI CAYNNNNRTG 3 cut(s) 705, 950, 995
SmlI CTYRAG 2 cut(s) 737, 805
SmoI CTYRAG 2 cut(s) 737, 805
Sse9I AATT 6 cut(s) 248, 263, 287, 471, 494, 625
SsiI CCGC 2 cut(s) 178, 858
SspI AATATT 1 cut(s) 189
SspMI CTAG 5 cut(s) 360, 780, 837, 842, 876
StyI CCWWGG 4 cut(s) 418, 462, 847, 996
TaaI ACNGT 2 cut(s) 29, 530
TaiI ACGT 1 cut(s) 148
TaqII GACCGA 1 cut(s) 179
TasI AATT 6 cut(s) 248, 263, 287, 471, 494, 625
TatI WGTACW 1 cut(s) 894
TfiI GAWTC 2 cut(s) 215, 259
Tru1I TTAA 1 cut(s) 738
Tru9I TTAA 1 cut(s) 738
TscAI CASTG 2 cut(s) 643, 1021
TseI GCWGC 2 cut(s) 458, 683
TspDTI ATGAA 3 cut(s) 297, 366, 580
TspRI CASTG 2 cut(s) 643, 1021
Van91I CCANNNNNTGG 1 cut(s) 638
Vha464I CTTAAG 1 cut(s) 737
VneI GTGCAC 1 cut(s) 729
VpaK11BI GGWCC 2 cut(s) 175, 415
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 657
XcmI CCANNNNNNNNNTGG 1 cut(s) 425
XspI CTAG 5 cut(s) 360, 780, 837, 842, 876
ZrmI AGTACT 1 cut(s) 896
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.