Prupe.5G056500_v2.0.a1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Forward (+)
6098834 .. 6099976
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G056500.1

Sequence Viewer

Length: 771 bp
ATGGCTCTCACAAATCGAGGCCAATACCTCTACGTAGATTTTCTTTTCATTTTGGCCATTTGCTCCTCTCAAGCATCGTCTCGCCAAATTTATGATGAGAAAACCATACTAAGCTTAAATGAATTTGCAGACCTAACCAATGAGGAGTTTCGGGAAATTCGTAATGGTTACATGAAACGATCCTCCAAATTGATCATGTCCAATTCCACGAAAGCTACAATGGATTGGAGAGAAAAGGGTGCAGTGACGCCTATCAAGGACCAAGGCAAATGTGGGTGTTGTTGGGTGTTCTCAGCAGCGGCAGCGACAGAAGGGGTTAACCAGCTCAAAACCGGAAACTTAATCTCACTATCAGAGCAAGAGCTTGTGGATTGTGACACTACAGGTCAAGATCATGGCTGTGAAGGTGAAAGGCTGACAACTGAAGCTAATTGCCCCTACCAGGGTGTAAATGGAACTAGTTGCAACACTCAGAAGGCTGCATCCCAAACAGTGTCCATAAACGGCTACGAGAATGTGCCTAAAAACAACAAAAATGCTATGTTGCAAGCCGTCGCTAACCAACCAATTTCGGTTGCCATTGACACAAGTGGTTGTACATTCCAGTTTTATTCAAGTGGTGTGTTCACTGGAACATGTGGTATAAACTTAGATCATGGAATTCTTGGGGCACGGTGGGCGGAGAGTGGATATGTGACGATGCAAATGGGCATTCCTGCCAAGGAAGGACTCTGTGGCATTGCTATTGAAGCTTCTTATCCAACCGCATGA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

257

Amino Acids

27.69

Weight (kDa)

5.04

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 299, 680, 765
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 4 cut(s) 87, 122, 156, 660
AcuI CTGAAG 1 cut(s) 444
AcyI GRCGYC 1 cut(s) 248
AfaI GTAC 1 cut(s) 598
AfiI CCNNNNNNNGG 2 cut(s) 442, 443
AflIII ACRYGT 1 cut(s) 635
AgsI TTSAA 2 cut(s) 615, 749
AhlI ACTAGT 1 cut(s) 458
AjnI CCWGG 1 cut(s) 441
AluBI AGCT 6 cut(s) 114, 215, 325, 364, 428, 752
AluI AGCT 6 cut(s) 114, 215, 325, 364, 428, 752
Alw26I GTCTC 1 cut(s) 84
AlwI GGATC 1 cut(s) 174
AoxI GGCC 2 cut(s) 19, 54
ApeKI GCWGC 3 cut(s) 296, 302, 479
ApoI RAATTY 4 cut(s) 87, 122, 156, 660
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 56
BbvI GCAGC 3 cut(s) 308, 314, 466
BceAI ACGGC 2 cut(s) 520, 536
BciT130I CCWGG 1 cut(s) 443
BclI TGATCA 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 84
BcuI ACTAGT 1 cut(s) 458
BfaI CTAG 1 cut(s) 459
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 4 cut(s) 297, 300, 303, 480
BlsI GCNGC 4 cut(s) 298, 301, 304, 481
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 3 cut(s) 83, 491, 690
BpuEI CTTGAG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 34
BsaHI GRCGYC 1 cut(s) 248
BsaJI CCNNGG 3 cut(s) 262, 442, 720
BsaWI WCCGGW 1 cut(s) 332
Bsc4I CCNNNNNNNGG 2 cut(s) 442, 443
Bse1I ACTGG 2 cut(s) 604, 634
Bse3DI GCAATG 1 cut(s) 738
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 3 cut(s) 262, 442, 720
BseGI GGATG 1 cut(s) 482
BseLI CCNNNNNNNGG 2 cut(s) 442, 443
BseMI GCAATG 1 cut(s) 738
BseMII CTCAG 2 cut(s) 306, 485
BseNI ACTGG 2 cut(s) 604, 634
BseRI GAGGAG 2 cut(s) 55, 158
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 3 cut(s) 308, 314, 466
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 2 cut(s) 21, 56
BsiSI CCGG 1 cut(s) 333
BslI CCNNNNNNNGG 2 cut(s) 442, 443
BsmAI GTCTC 1 cut(s) 84
BsmBI CGTCTC 1 cut(s) 84
BsmI GAATGC 1 cut(s) 711
BsnI GGCC 2 cut(s) 21, 56
Bsp1286I GDGCHC 1 cut(s) 673
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 4 cut(s) 179, 192, 391, 652
BspACI CCGC 3 cut(s) 299, 680, 765
BspANI GGCC 2 cut(s) 21, 56
BspCNI CTCAG 2 cut(s) 305, 484
BspPI GGATC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 738
BsrGI TGTACA 1 cut(s) 596
BsrI ACTGG 2 cut(s) 604, 634
BssECI CCNNGG 3 cut(s) 262, 442, 720
BssMI GATC 4 cut(s) 179, 192, 391, 652
BssNI GRCGYC 1 cut(s) 248
BssT1I CCWWGG 2 cut(s) 262, 720
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 2 cut(s) 493, 675
BstACI GRCGYC 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 4 cut(s) 110, 292, 471, 649
BstF5I GGATG 1 cut(s) 482
BstKTI GATC 4 cut(s) 182, 195, 394, 655
BstMAI GTCTC 1 cut(s) 84
BstMBI GATC 4 cut(s) 179, 192, 391, 652
BstMWI GCNNNNNNNGC 3 cut(s) 302, 677, 749
BstNI CCWGG 1 cut(s) 443
BstNSI RCATGY 1 cut(s) 639
BstSCI CCNGG 1 cut(s) 441
BstSFI CTRYAG 1 cut(s) 381
BstSLI GKGCMC 1 cut(s) 673
BstSNI TACGTA 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 308, 314, 466
BsuRI GGCC 2 cut(s) 21, 56
BtsCI GGATG 1 cut(s) 482
BtsI GCAGTG 1 cut(s) 249
BtsIMutI CAGTG 3 cut(s) 249, 498, 627
Cac8I GCNNGC 1 cut(s) 549
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 256
Csp6I GTAC 1 cut(s) 597
CviAII CATG 6 cut(s) 172, 196, 395, 636, 656, 768
CviQI GTAC 1 cut(s) 597
DdeI CTNAG 4 cut(s) 110, 292, 471, 649
DpnI GATC 4 cut(s) 181, 194, 393, 654
DpnII GATC 4 cut(s) 179, 192, 391, 652
EaeI YGGCCR 1 cut(s) 54
EciI GGCGGA 1 cut(s) 695
Eco105I TACGTA 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 262, 720
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 444
EcoRI GAATTC 1 cut(s) 660
EcoRII CCWGG 1 cut(s) 441
EcoT14I CCWWGG 2 cut(s) 262, 720
ErhI CCWWGG 2 cut(s) 262, 720
Esp3I CGTCTC 1 cut(s) 84
FaeI CATG 6 cut(s) 175, 199, 398, 639, 659, 771
FatI CATG 6 cut(s) 171, 195, 394, 635, 655, 767
FbaI TGATCA 1 cut(s) 192
Fnu4HI GCNGC 4 cut(s) 297, 300, 303, 480
FokI GGATG 1 cut(s) 469
Fsp4HI GCNGC 4 cut(s) 297, 300, 303, 480
FspBI CTAG 1 cut(s) 459
GluI GCNGC 4 cut(s) 297, 300, 303, 480
HaeIII GGCC 2 cut(s) 21, 56
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 248
Hin1II CATG 6 cut(s) 175, 199, 398, 639, 659, 771
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HindIII AAGCTT 2 cut(s) 112, 750
HinfI GANTC 1 cut(s) 729
HpaI GTTAAC 1 cut(s) 319
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 2 cut(s) 319, 627
Hpy188I TCNGA 2 cut(s) 355, 474
Hpy188III TCNNGA 2 cut(s) 152, 389
Hpy8I GTNNAC 2 cut(s) 319, 627
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 4 cut(s) 305, 398, 469, 719
HpyCH4III ACNGT 2 cut(s) 493, 675
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 6 cut(s) 128, 242, 465, 482, 547, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 677, 749
HpyF3I CTNAG 4 cut(s) 110, 292, 471, 649
HpySE526I ACGT 1 cut(s) 33
Hsp92I GRCGYC 1 cut(s) 248
Hsp92II CATG 6 cut(s) 175, 199, 398, 639, 659, 771
Ksp22I TGATCA 1 cut(s) 192
KspAI GTTAAC 1 cut(s) 319
Kzo9I GATC 4 cut(s) 179, 192, 391, 652
LmnI GCTCC 1 cut(s) 68
LpnPI CCDG 8 cut(s) 335, 346, 369, 428, 455, 615, 617, 729
Lsp1109I GCAGC 3 cut(s) 308, 314, 466
LweI GCATC 3 cut(s) 83, 491, 690
MaeI CTAG 1 cut(s) 459
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 4 cut(s) 167, 244, 374, 694
MalI GATC 4 cut(s) 181, 194, 393, 654
MboI GATC 4 cut(s) 179, 192, 391, 652
MhlI GDGCHC 1 cut(s) 673
MlsI TGGCCA 1 cut(s) 56
MluCI AATT 8 cut(s) 87, 122, 156, 188, 202, 430, 567, 660
MluNI TGGCCA 1 cut(s) 56
MlyI GAGTC 1 cut(s) 723
MnlI CCTC 5 cut(s) 11, 38, 76, 136, 193
Mox20I TGGCCA 1 cut(s) 56
MscI TGGCCA 1 cut(s) 56
MseI TTAA 3 cut(s) 116, 318, 341
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 56
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 711
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 3 cut(s) 302, 677, 749
NdeII GATC 4 cut(s) 179, 192, 391, 652
NlaIII CATG 6 cut(s) 175, 199, 398, 639, 659, 771
NmuCI GTSAC 3 cut(s) 244, 374, 694
NspI RCATGY 1 cut(s) 639
PciI ACATGT 1 cut(s) 635
PcsI WCGNNNNNNNCGW 1 cut(s) 157
PctI GAATGC 1 cut(s) 711
PkrI GCNGC 4 cut(s) 298, 301, 304, 481
PleI GAGTC 1 cut(s) 723
PpsI GAGTC 1 cut(s) 723
Ppu21I YACGTR 1 cut(s) 34
PscI ACATGT 1 cut(s) 635
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspPI GGNCC 1 cut(s) 259
RsaI GTAC 1 cut(s) 598
RsaNI GTAC 1 cut(s) 597
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 3 cut(s) 116, 318, 341
SatI GCNGC 4 cut(s) 297, 300, 303, 480
Sau3AI GATC 4 cut(s) 179, 192, 391, 652
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 1 cut(s) 723
ScrFI CCNGG 1 cut(s) 443
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 3 cut(s) 83, 491, 690
SfcI CTRYAG 1 cut(s) 381
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
SnaBI TACGTA 1 cut(s) 34
SpeI ACTAGT 1 cut(s) 458
Sse9I AATT 8 cut(s) 87, 122, 156, 188, 202, 430, 567, 660
SsiI CCGC 3 cut(s) 299, 680, 765
SspMI CTAG 1 cut(s) 459
StyD4I CCNGG 1 cut(s) 441
StyI CCWWGG 2 cut(s) 262, 720
TaaI ACNGT 2 cut(s) 493, 675
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 16
TasI AATT 8 cut(s) 87, 122, 156, 188, 202, 430, 567, 660
TatI WGTACW 1 cut(s) 596
TauI GCSGC 1 cut(s) 302
Tru1I TTAA 3 cut(s) 116, 318, 341
Tru9I TTAA 3 cut(s) 116, 318, 341
TscAI CASTG 3 cut(s) 249, 498, 634
TseFI GTSAC 3 cut(s) 244, 374, 694
TseI GCWGC 3 cut(s) 296, 302, 479
Tsp45I GTSAC 3 cut(s) 244, 374, 694
TspDTI ATGAA 3 cut(s) 37, 135, 188
TspRI CASTG 3 cut(s) 249, 498, 634
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 4 cut(s) 87, 122, 156, 660
XceI RCATGY 1 cut(s) 639
XcmI CCANNNNNNNNNTGG 2 cut(s) 269, 449
XspI CTAG 1 cut(s) 459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.