Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

60768735 .. 60769169

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ51315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGACAATGCATTTGAGTTCATCAATCAAAATCATGGACTTAGTACTGAGGCTAAATACCCCTACACCGGTGTTGATGGTACATGCAATGCCCAAAAGGAAGCAAGCCATGCAGCCTCGATAACTGGACACGAAGATTTGCCTGCAAATAGTGAAAGTGCCCTTCTTAAGGTCGTTGCCAATCAACCCATTTCTGTTGCCATTGATGCTAGTGGATCTAATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACTTGTGGAACAAGCCTAGACCATGGTGTTACTGCTATTGGTTGTGGCGTCAGTGATGATGGGACTAATTATTGGTTGGTTAAGAACTCATGGGGGGCACAATGGGGTGAAGAAGGGTACATAAGTATGCACAGAGATGTTGCGGCACATGAAAGTTTGTGTGGTTTTTGTTGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

144

Amino Acids

15.26

Weight (kDa)

4.59

Isoelectric Point (pI)

15.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 133	7.7e-43	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	223
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	3 cut(s)	46, 82, 374
AfiI	CCNNNNNNNGG	2 cut(s)	68, 169
AflII	CTTAAG	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	237
AlwI	GGATC	1 cut(s)	223
ApeKI	GCWGC	1 cut(s)	113
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AsiGI	ACCGGT	1 cut(s)	68
AsuHPI	GGTGA	1 cut(s)	374
BaeGI	GKGCMC	2 cut(s)	163, 355
BaeI	ACNNNNGTAYC	2 cut(s)	364, 397
BbvI	GCAGC	1 cut(s)	125
BccI	CCATC	2 cut(s)	71, 308
BfaI	CTAG	2 cut(s)	210, 272
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	114, 399
BlsI	GCNGC	2 cut(s)	115, 400
BmcAI	AGTACT	1 cut(s)	46
BmsI	GCATC	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 169
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	277
BseLI	CCNNNNNNNGG	2 cut(s)	68, 169
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	130
BseSI	GKGCMC	2 cut(s)	163, 355
BseXI	GCAGC	1 cut(s)	125
BshTI	ACCGGT	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	2 cut(s)	68, 169
BsmFI	GGGAC	1 cut(s)	331
Bsp1286I	GDGCHC	2 cut(s)	163, 355
Bsp143I	GATC	1 cut(s)	215
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	1 cut(s)	398
BspCNI	CTCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	215
BssNI	GRCGYC	1 cut(s)	303
BssT1I	CCWWGG	1 cut(s)	277
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	2 cut(s)	106, 144
BstDEI	CTNAG	2 cut(s)	41, 48
BstDSI	CCRYGG	1 cut(s)	277
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstKTI	GATC	1 cut(s)	218
BstMBI	GATC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 206
BstNSI	RCATGY	1 cut(s)	87
BstSLI	GKGCMC	2 cut(s)	163, 355
BstV1I	GCAGC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	313
Cac8I	GCNNGC	2 cut(s)	106, 144
Cfr10I	RCCGGY	1 cut(s)	68
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	45, 81, 373
CspAI	ACCGGT	1 cut(s)	68
CviAII	CATG	6 cut(s)	35, 84, 110, 278, 345, 404
CviJI	RGCY	4 cut(s)	53, 108, 116, 270
CviKI_1	RGCY	4 cut(s)	53, 108, 116, 270
CviQI	GTAC	3 cut(s)	45, 81, 373
DdeI	CTNAG	2 cut(s)	41, 48
DpnI	GATC	1 cut(s)	217
DpnII	GATC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	277
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	277
EcoT22I	ATGCAT	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	6 cut(s)	38, 87, 113, 281, 348, 407
FaiI	YATR	8 cut(s)	36, 85, 111, 279, 346, 377, 383, 405
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	6 cut(s)	34, 83, 109, 277, 344, 403
Fnu4HI	GCNGC	2 cut(s)	114, 399
Fsp4HI	GCNGC	2 cut(s)	114, 399
FspBI	CTAG	2 cut(s)	210, 272
GluI	GCNGC	2 cut(s)	114, 399
HapII	CCGG	1 cut(s)	69
HgaI	GACGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	6 cut(s)	38, 87, 113, 281, 348, 407
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	173, 362
HpyCH4V	TGCA	5 cut(s)	11, 87, 113, 146, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 206
HpyF3I	CTNAG	2 cut(s)	41, 48
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	6 cut(s)	38, 87, 113, 281, 348, 407
Kzo9I	GATC	1 cut(s)	215
LpnPI	CCDG	4 cut(s)	82, 111, 156, 237
Lsp1109I	GCAGC	1 cut(s)	125
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	210, 272
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	217
MboI	GATC	1 cut(s)	215
MboII	GAAGA	2 cut(s)	146, 377
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	163, 355
MluCI	AATT	3 cut(s)	220, 227, 322
MnlI	CCTC	2 cut(s)	43, 127
Mph1103I	ATGCAT	1 cut(s)	13
MseI	TTAA	2 cut(s)	168, 336
MslI	CAYNNNNRTG	2 cut(s)	380, 390
MspCI	CTTAAG	1 cut(s)	167
MspI	CCGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	110, 206
NcoI	CCATGG	1 cut(s)	277
NdeII	GATC	1 cut(s)	215
NlaIII	CATG	6 cut(s)	38, 87, 113, 281, 348, 407
NsiI	ATGCAT	1 cut(s)	13
NspI	RCATGY	1 cut(s)	87
PinAI	ACCGGT	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	115, 400
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	3 cut(s)	46, 82, 374
RsaNI	GTAC	3 cut(s)	45, 81, 373
RseI	CAYNNNNRTG	2 cut(s)	380, 390
SaqAI	TTAA	2 cut(s)	168, 336
SatI	GCNGC	2 cut(s)	114, 399
Sau3AI	GATC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	163, 355
SetI	ASST	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	196
SgrAI	CRCCGGYG	1 cut(s)	68
SmiMI	CAYNNNNRTG	2 cut(s)	380, 390
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	3 cut(s)	220, 227, 322
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	210, 272
StyI	CCWWGG	1 cut(s)	277
TaqI	TCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	220, 227, 322
TatI	WGTACW	1 cut(s)	44
TauI	GCSGC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	168, 336
Tru9I	TTAA	2 cut(s)	168, 336
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	10, 420
TspRI	CASTG	1 cut(s)	313
Vha464I	CTTAAG	1 cut(s)	167
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	2 cut(s)	210, 272
ZrmI	AGTACT	1 cut(s)	46
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.