Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

43974412 .. 43975237

Gene Structure 826 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGTTCATCAACCAGTGCAAATGTATCTGTTTGGCCTTGATCCTCATGCTAGGGGCTTGGTCTTCTGAAGCCACTTCCCGCAGTCTCCAAGATGCAATGATGTATGGGAGATACGAGCAATGGATGGCTCGTTATGGACGTGTATATACTGACATTGCCGAGAAGGAGAAGCGCTTCCAAATATTCAAGGACAATGTAGCCTTTATAGAATCTTCCAACGACGAAGTACACAAACCTTACAAATTAAGTGTCAATAGATTTGCAGACCTTACAAATGAAGAGTTCACAGCCTCAAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGTCCACTTCTTTCAAATATGAAAATGTTACCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTGACTCCCATCAAGGACCAAGGCCAATGTGGATGCTGTTGGGCTTTCTCAGCAGTGGCAGCCATGGAAGGAATTACTCAAATTTCAACTGGTAAATTGATTTCTTTGTCCGAACAAGAGTTAGTGGACTGTGATGTCAATGGTGAAGACCAAGGCTGTGAGGGAGGCTTGATGGATGTAAGTACAATTCTTGCACATATCGTATTGGCATTCCCATACAAAATTATGACAAAGCTCGTTACTGATCTCAGAAAGTCACAGGTAAGTGCATCTGCATATGCATGGGATTGCAATGTGTGTTGCAATCCCCAAGTCAGCTGTCAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

242

Amino Acids

27.22

Weight (kDa)

5.5

Isoelectric Point (pI)

30.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	8.6e-20	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 193	9.8e-30	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	37
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	231, 583
AfeI	AGCGCT	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	4 cut(s)	190, 310, 346, 486
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	4 cut(s)	371, 398, 634, 717
AluI	AGCT	4 cut(s)	371, 398, 634, 717
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	1 cut(s)	37
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	2 cut(s)	36, 421
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	480
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	415
AsuHPI	GGTGA	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	415
BbsI	GAAGAC	2 cut(s)	57, 552
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	3 cut(s)	121, 416, 565
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
Bme18I	GGWCC	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	1 cut(s)	415
BmsI	GCATC	3 cut(s)	85, 422, 677
BpiI	GAAGAC	2 cut(s)	57, 552
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	280
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	3 cut(s)	418, 462, 550
Bse1I	ACTGG	3 cut(s)	16, 386, 493
Bse3DI	GCAATG	4 cut(s)	105, 128, 156, 697
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	3 cut(s)	418, 462, 550
BseGI	GGATG	3 cut(s)	132, 437, 580
BseMI	GCAATG	4 cut(s)	105, 128, 156, 697
BseMII	CTCAG	2 cut(s)	462, 661
BseNI	ACTGG	3 cut(s)	16, 386, 493
BseXI	GCAGC	1 cut(s)	470
BshFI	GGCC	2 cut(s)	38, 423
BshVI	ATCGAT	1 cut(s)	304
BsmAI	GTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	2 cut(s)	38, 423
Bsp143I	GATC	2 cut(s)	42, 643
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	2 cut(s)	38, 423
BspCNI	CTCAG	2 cut(s)	461, 660
BspDI	ATCGAT	1 cut(s)	304
BspPI	GGATC	1 cut(s)	37
BsrDI	GCAATG	4 cut(s)	105, 128, 156, 697
BsrI	ACTGG	3 cut(s)	16, 386, 493
BssECI	CCNNGG	3 cut(s)	418, 462, 550
BssMI	GATC	2 cut(s)	42, 643
BssT1I	CCWWGG	3 cut(s)	418, 462, 550
Bst4CI	ACNGT	2 cut(s)	364, 530
Bst6I	CTCTTC	1 cut(s)	276
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	2 cut(s)	448, 647
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	132, 437, 580
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	2 cut(s)	45, 646
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	42, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 458
BstV1I	GCAGC	1 cut(s)	470
BstV2I	GAAGAC	2 cut(s)	57, 552
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	2 cut(s)	38, 423
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	132, 437, 580
BtsI	GCAGTG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	23, 459
Cac8I	GCNNGC	1 cut(s)	369
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	1 cut(s)	415
ClaI	ATCGAT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	230, 582
CviAII	CATG	4 cut(s)	49, 317, 463, 681
CviQI	GTAC	2 cut(s)	230, 582
DdeI	CTNAG	2 cut(s)	448, 647
DpnI	GATC	2 cut(s)	44, 645
DpnII	GATC	2 cut(s)	42, 643
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco130I	CCWWGG	3 cut(s)	418, 462, 550
Eco47I	GGWCC	1 cut(s)	415
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	90
EcoT14I	CCWWGG	3 cut(s)	418, 462, 550
EcoT22I	ATGCAT	1 cut(s)	682
ErhI	CCWWGG	3 cut(s)	418, 462, 550
FaeI	CATG	4 cut(s)	52, 320, 466, 684
FatI	CATG	4 cut(s)	48, 316, 462, 680
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	676
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	3 cut(s)	139, 444, 587
Fsp4HI	GCNGC	1 cut(s)	459
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	2 cut(s)	38, 423
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	4 cut(s)	52, 320, 466, 684
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	212, 306, 403
HphI	GGTGA	1 cut(s)	554
Hpy166II	GTNNAC	4 cut(s)	232, 288, 336, 526
Hpy188I	TCNGA	3 cut(s)	70, 511, 650
Hpy188III	TCNNGA	1 cut(s)	297
Hpy8I	GTNNAC	4 cut(s)	232, 288, 336, 526
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	2 cut(s)	160, 461
HpyCH4III	ACNGT	2 cut(s)	364, 530
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	9 cut(s)	21, 98, 266, 593, 668, 674, 680, 690, 702
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 458
HpyF3I	CTNAG	2 cut(s)	448, 647
HpySE526I	ACGT	1 cut(s)	142
Hsp92II	CATG	4 cut(s)	52, 320, 466, 684
HspAI	GCGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	42, 643
LmnI	GCTCC	1 cut(s)	395
LpnPI	CCDG	5 cut(s)	29, 367, 381, 474, 644
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	3 cut(s)	85, 422, 677
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	4 cut(s)	358, 400, 637, 654
MalI	GATC	2 cut(s)	44, 645
MboI	GATC	2 cut(s)	42, 643
MboII	GAAGA	4 cut(s)	57, 207, 293, 557
MluCI	AATT	6 cut(s)	245, 471, 480, 494, 585, 621
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	56, 304, 378, 553, 557
Mph1103I	ATGCAT	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	176
MseI	TTAA	1 cut(s)	248
MslI	CAYNNNNRTG	1 cut(s)	679
MspA1I	CMGCKG	1 cut(s)	717
Mva1269I	GAATGC	1 cut(s)	608
MwoI	GCNNNNNNNGC	2 cut(s)	449, 458
NcoI	CCATGG	1 cut(s)	462
NdeI	CATATG	1 cut(s)	676
NdeII	GATC	2 cut(s)	42, 643
NlaIII	CATG	4 cut(s)	52, 320, 466, 684
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	400, 654
NsiI	ATGCAT	1 cut(s)	682
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	1 cut(s)	608
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	212, 306
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PspPI	GGNCC	1 cut(s)	415
PvuII	CAGCTG	1 cut(s)	717
RsaI	GTAC	2 cut(s)	231, 583
RsaNI	GTAC	2 cut(s)	230, 582
RseI	CAYNNNNRTG	1 cut(s)	679
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	2 cut(s)	42, 643
Sau96I	GGNCC	1 cut(s)	415
SchI	GAGTC	1 cut(s)	397
SetI	ASST	8 cut(s)	145, 241, 273, 373, 400, 636, 663, 719
SfaNI	GCATC	3 cut(s)	85, 422, 677
SinI	GGWCC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	679
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	6 cut(s)	245, 471, 480, 494, 585, 621
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	53
StyI	CCWWGG	3 cut(s)	418, 462, 550
TaaI	ACNGT	2 cut(s)	364, 530
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	1 cut(s)	304
TasI	AATT	6 cut(s)	245, 471, 480, 494, 585, 621
TatI	WGTACW	2 cut(s)	229, 581
TfiI	GAWTC	2 cut(s)	212, 306
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TscAI	CASTG	2 cut(s)	23, 459
TseFI	GTSAC	2 cut(s)	400, 654
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	400, 654
TspDTI	ATGAA	3 cut(s)	294, 333, 366
TspRI	CASTG	2 cut(s)	23, 459
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	480
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.