Rmu_sc0000999.1_g000021

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000999.1
Physical Location & Seq
Reverse (-)
62352 .. 63509
1158 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000999.1_g000021.1.cds

Sequence Viewer

Length: 867 bp
atgttggcagcctggtcatctgaagccacctctcgcagtctccaagatgtatcaatgtttgcaagatacgagcaatggatggcacgctatggacgaaacaaactctataaattgagtgtgaatcaatttgcagaccttacaaatgaagaattcacagcctccagaaatcggttcaaagggcatgagtgttccacaaagaccactactttcaggtatgaaaatgctagtgtgccggctacaatggactggagacagaaaggagctgtaactcccgtcaaggaccaaggccaatgtgccgtggcagccatggaaggaattactcaacttacaactggtaaattgatttctttgtctgagcaagagctagttgaccgtgatgtcaatggtgaagcccaagactgttggggtggcttaatggatgatgcctttcgattcatctatgaaaaccatggacttagcaccgaggctaattatccctacaccggtgttgagggtacatgcaatgccaagaaggaagcaagccatgcagcctcgataactggccacgaagatgtgcctgcaaacagtgaaagcgcacttcttaaggctgttgccagtcaacctatttctgtttatattgatgctagtggatctgatttccaattctattcaagtggtgttttcacaggaacctgtggaacaagcctagaccatggtgttactgctgttggttatggcatcagcgatgatgggactgagtattggttggttaagaactcatggggcgcagaatggggagaagaaggctacataagaatgcaaagagaggttgcttcacaggaaggtctctgtggtattgctatggaagcctcttaccccactgcatga

Protein Analysis

288

Amino Acids

31.53

Weight (kDa)

4.75

Isoelectric Point (pI)

22.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 377
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 1 cut(s) 496
AfiI CCNNNNNNNGG 2 cut(s) 168, 482
AflII CTTAAG 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 2 cut(s) 175, 651
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 2 cut(s) 263, 364
AluI AGCT 2 cut(s) 263, 364
Alw26I GTCTC 3 cut(s) 44, 244, 830
AlwI GGATC 1 cut(s) 637
AoxI GGCC 2 cut(s) 286, 541
ApeKI GCWGC 3 cut(s) 8, 302, 527
ApoI RAATTY 1 cut(s) 149
AsiGI ACCGGT 1 cut(s) 482
AspLEI GCGC 2 cut(s) 575, 767
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 280
BalI TGGCCA 1 cut(s) 543
BbvI GCAGC 3 cut(s) 20, 314, 539
BccI CCATC 2 cut(s) 73, 722
BceAI ACGGC 1 cut(s) 281
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 3 cut(s) 44, 244, 830
BfaI CTAG 4 cut(s) 225, 365, 624, 686
BfrI CTTAAG 1 cut(s) 581
BisI GCNGC 3 cut(s) 9, 303, 528
BlsI GCNGC 3 cut(s) 10, 304, 529
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 280
BmgT120I GGNCC 1 cut(s) 280
BmiI GGNNCC 1 cut(s) 670
BmrFI CCNGG 1 cut(s) 13
BmsI GCATC 3 cut(s) 412, 610, 726
BpmI CTGGAG 2 cut(s) 145, 268
BsaI GGTCTC 1 cut(s) 830
BsaJI CCNNGG 6 cut(s) 283, 297, 306, 448, 462, 691
BsaWI WCCGGW 1 cut(s) 482
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 482
Bse118I RCCGGY 2 cut(s) 232, 482
Bse1I ACTGG 4 cut(s) 251, 337, 544, 594
Bse3DI GCAATG 2 cut(s) 80, 508
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 6 cut(s) 283, 297, 306, 448, 462, 691
BseGI GGATG 2 cut(s) 84, 424
BseLI CCNNNNNNNGG 2 cut(s) 168, 482
BseMI GCAATG 2 cut(s) 80, 508
BseMII CTCAG 2 cut(s) 345, 726
BseNI ACTGG 4 cut(s) 251, 337, 544, 594
BseXI GCAGC 3 cut(s) 20, 314, 539
BshFI GGCC 2 cut(s) 288, 543
BshTI ACCGGT 1 cut(s) 482
BsiSI CCGG 2 cut(s) 233, 483
BslFI GGGAC 1 cut(s) 745
BslI CCNNNNNNNGG 2 cut(s) 168, 482
BsmAI GTCTC 3 cut(s) 44, 244, 830
BsmFI GGGAC 1 cut(s) 745
BsmI GAATGC 1 cut(s) 801
BsnI GGCC 2 cut(s) 288, 543
Bso31I GGTCTC 1 cut(s) 830
Bsp143I GATC 1 cut(s) 629
Bsp19I CCATGG 3 cut(s) 306, 448, 691
BspANI GGCC 2 cut(s) 288, 543
BspCNI CTCAG 2 cut(s) 346, 727
BspLI GGNNCC 1 cut(s) 670
BspPI GGATC 1 cut(s) 637
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 830
BsrDI GCAATG 2 cut(s) 80, 508
BsrFI RCCGGY 2 cut(s) 232, 482
BsrI ACTGG 4 cut(s) 251, 337, 544, 594
BssAI RCCGGY 2 cut(s) 232, 482
BssECI CCNNGG 6 cut(s) 283, 297, 306, 448, 462, 691
BssMI GATC 1 cut(s) 629
BssT1I CCWWGG 4 cut(s) 283, 306, 448, 691
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 374, 401, 566
BstAFI CTTAAG 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 524
BstC8I GCNNGC 4 cut(s) 85, 234, 520, 558
BstDEI CTNAG 3 cut(s) 354, 455, 735
BstDSI CCRYGG 4 cut(s) 297, 306, 448, 691
BstF5I GGATG 2 cut(s) 84, 424
BstHHI GCGC 2 cut(s) 575, 767
BstKTI GATC 1 cut(s) 632
BstMAI GTCTC 3 cut(s) 44, 244, 830
BstMBI GATC 1 cut(s) 629
BstMWI GCNNNNNNNGC 3 cut(s) 302, 524, 845
BstNI CCWGG 1 cut(s) 13
BstNSI RCATGY 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 20, 314, 539
BstX2I RGATCY 1 cut(s) 629
BstYI RGATCY 1 cut(s) 629
BsuRI GGCC 2 cut(s) 288, 543
BtgI CCRYGG 4 cut(s) 297, 306, 448, 691
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 2 cut(s) 84, 424
BtsI GCAGTG 1 cut(s) 858
BtsIMutI CAGTG 2 cut(s) 571, 858
Cac8I GCNNGC 4 cut(s) 85, 234, 520, 558
CfoI GCGC 2 cut(s) 575, 767
Cfr10I RCCGGY 2 cut(s) 232, 482
Cfr13I GGNCC 1 cut(s) 280
Csp6I GTAC 1 cut(s) 495
CspAI ACCGGT 1 cut(s) 482
CviAII CATG 8 cut(s) 182, 307, 449, 498, 524, 692, 759, 864
CviQI GTAC 1 cut(s) 495
DdeI CTNAG 3 cut(s) 354, 455, 735
DpnI GATC 1 cut(s) 631
DpnII GATC 1 cut(s) 629
DrdI GACNNNNNNGTC 1 cut(s) 377
DseDI GACNNNNNNGTC 1 cut(s) 377
EaeI YGGCCR 1 cut(s) 541
Eco130I CCWWGG 4 cut(s) 283, 306, 448, 691
Eco31I GGTCTC 1 cut(s) 830
Eco47I GGWCC 1 cut(s) 280
Eco57I CTGAAG 1 cut(s) 42
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 4 cut(s) 283, 306, 448, 691
ErhI CCWWGG 4 cut(s) 283, 306, 448, 691
FaeI CATG 8 cut(s) 185, 310, 452, 501, 527, 695, 762, 867
FaqI GGGAC 1 cut(s) 745
FatI CATG 8 cut(s) 181, 306, 448, 497, 523, 691, 758, 863
Fnu4HI GCNGC 3 cut(s) 9, 303, 528
FokI GGATG 2 cut(s) 91, 431
Fsp4HI GCNGC 3 cut(s) 9, 303, 528
FspBI CTAG 4 cut(s) 225, 365, 624, 686
GlaI GCGC 2 cut(s) 574, 766
GluI GCNGC 3 cut(s) 9, 303, 528
GsuI CTGGAG 2 cut(s) 145, 268
HaeIII GGCC 2 cut(s) 288, 543
HapII CCGG 2 cut(s) 233, 483
HhaI GCGC 2 cut(s) 575, 767
Hin1II CATG 8 cut(s) 185, 310, 452, 501, 527, 695, 762, 867
Hin6I GCGC 2 cut(s) 573, 765
HinP1I GCGC 2 cut(s) 573, 765
HincII GTYRAC 2 cut(s) 370, 599
HindII GTYRAC 2 cut(s) 370, 599
HinfI GANTC 2 cut(s) 121, 432
HpaII CCGG 2 cut(s) 233, 483
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 370, 599
Hpy188I TCNGA 3 cut(s) 22, 355, 634
Hpy188III TCNNGA 1 cut(s) 162
Hpy8I GTNNAC 2 cut(s) 370, 599
HpyAV CCTTC 4 cut(s) 305, 505, 776, 815
HpyCH4III ACNGT 3 cut(s) 374, 401, 566
HpyCH4V TGCA 7 cut(s) 62, 131, 501, 527, 560, 799, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 302, 524, 845
HpyF3I CTNAG 3 cut(s) 354, 455, 735
Hsp92II CATG 8 cut(s) 185, 310, 452, 501, 527, 695, 762, 867
HspAI GCGC 2 cut(s) 573, 765
KroI GCCGGC 1 cut(s) 232
KroNI GCCGGC 1 cut(s) 234
Kzo9I GATC 1 cut(s) 629
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 3 cut(s) 20, 314, 539
LweI GCATC 3 cut(s) 412, 610, 726
MaeI CTAG 4 cut(s) 225, 365, 624, 686
MaeIII GTNAC 2 cut(s) 265, 697
MalI GATC 1 cut(s) 631
MboI GATC 1 cut(s) 629
MboII GAAGA 3 cut(s) 158, 560, 791
MflI RGATCY 1 cut(s) 629
MlsI TGGCCA 1 cut(s) 543
MluCI AATT 7 cut(s) 110, 125, 149, 315, 338, 469, 641
MluNI TGGCCA 1 cut(s) 543
MnlI CCTC 7 cut(s) 40, 169, 457, 484, 541, 799, 859
Mox20I TGGCCA 1 cut(s) 543
MroNI GCCGGC 1 cut(s) 232
MscI TGGCCA 1 cut(s) 543
MseI TTAA 3 cut(s) 413, 582, 750
MslI CAYNNNNRTG 2 cut(s) 549, 794
Msp20I TGGCCA 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 2 cut(s) 233, 483
MspR9I CCNGG 1 cut(s) 13
Mva1269I GAATGC 1 cut(s) 801
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 3 cut(s) 302, 524, 845
NaeI GCCGGC 1 cut(s) 234
NcoI CCATGG 3 cut(s) 306, 448, 691
NdeII GATC 1 cut(s) 629
NgoMIV GCCGGC 1 cut(s) 232
NlaIII CATG 8 cut(s) 185, 310, 452, 501, 527, 695, 762, 867
NlaIV GGNNCC 1 cut(s) 670
NspI RCATGY 1 cut(s) 501
PcsI WCGNNNNNNNCGW 1 cut(s) 91
PctI GAATGC 1 cut(s) 801
PdiI GCCGGC 1 cut(s) 234
PfeI GAWTC 2 cut(s) 121, 432
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 3 cut(s) 10, 304, 529
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 670
PspPI GGNCC 1 cut(s) 280
PsuI RGATCY 1 cut(s) 629
RsaI GTAC 1 cut(s) 496
RsaNI GTAC 1 cut(s) 495
RseI CAYNNNNRTG 2 cut(s) 549, 794
SaqAI TTAA 3 cut(s) 413, 582, 750
SatI GCNGC 3 cut(s) 9, 303, 528
Sau3AI GATC 1 cut(s) 629
Sau96I GGNCC 1 cut(s) 280
ScrFI CCNGG 1 cut(s) 13
SetI ASST 9 cut(s) 32, 138, 215, 265, 366, 604, 674, 810, 826
SfaNI GCATC 3 cut(s) 412, 610, 726
SgrAI CRCCGGYG 1 cut(s) 482
SinI GGWCC 1 cut(s) 280
SmiMI CAYNNNNRTG 2 cut(s) 549, 794
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 7 cut(s) 110, 125, 149, 315, 338, 469, 641
SspMI CTAG 4 cut(s) 225, 365, 624, 686
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 4 cut(s) 283, 306, 448, 691
TaaI ACNGT 3 cut(s) 374, 401, 566
TaqI TCGA 2 cut(s) 430, 533
TasI AATT 7 cut(s) 110, 125, 149, 315, 338, 469, 641
TfiI GAWTC 2 cut(s) 121, 432
Tru1I TTAA 3 cut(s) 413, 582, 750
Tru9I TTAA 3 cut(s) 413, 582, 750
TscAI CASTG 2 cut(s) 571, 865
TseI GCWGC 3 cut(s) 8, 302, 527
TspDTI ATGAA 4 cut(s) 159, 231, 424, 456
TspRI CASTG 2 cut(s) 571, 865
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 280
XapI RAATTY 1 cut(s) 149
XceI RCATGY 1 cut(s) 501
XspI CTAG 4 cut(s) 225, 365, 624, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.