Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

43984459 .. 43984911

Gene Structure 453 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATGATGCCTTTCAGTTCATCAATCAAAATCATGGACTTAGTACTGAGACTAATTACCCCTATACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAAACCATGCAGCCTCGATAACTGGCCATGAAGATGTGCCCGCTAACAGTGAAAGTGCACTTCTTAAGGCTGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCTGATTTCCAGTTCTATTCAAGTGGTGTTTTCACAGGAACTTGTGGAACGAGCCTAGATCATGGTGTTACCGCTGTTGGTTATGGCGTCAGTGATGATGGGACTAAGTATTGGTTGGTGAAGAACTCATGGGGGGCAGAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGCTGCACAGGAAGGTCTTTGCGGTATTGCTATGGAAGCCTCTTACCCCACTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

150

Amino Acids

15.89

Weight (kDa)

4.39

Isoelectric Point (pI)

9.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 149	9.8e-50	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	144, 288, 417
AclWI	GGATC	1 cut(s)	223
AcoI	YGGCCR	1 cut(s)	127
AcyI	GRCGYC	1 cut(s)	303
AfaI	GTAC	3 cut(s)	46, 82, 374
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	237
Alw21I	GWGCWC	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	1 cut(s)	223
AoxI	GGCC	1 cut(s)	127
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	2 cut(s)	113, 398
AsuHPI	GGTGA	2 cut(s)	346, 374
BaeGI	GKGCMC	2 cut(s)	144, 163
BalI	TGGCCA	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	125, 385
BccI	CCATC	2 cut(s)	71, 308
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	2 cut(s)	210, 272
BfrI	CTTAAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	114, 399
BlsI	GCNGC	2 cut(s)	115, 400
BmcAI	AGTACT	1 cut(s)	46
BmsI	GCATC	1 cut(s)	196
BsaHI	GRCGYC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	3 cut(s)	73, 130, 226
Bse3DI	GCAATG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	3 cut(s)	73, 130, 226
BseSI	GKGCMC	2 cut(s)	144, 163
BseXI	GCAGC	2 cut(s)	125, 385
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	331
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	331
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	2 cut(s)	144, 163
Bsp143I	GATC	2 cut(s)	215, 274
BspACI	CCGC	3 cut(s)	144, 288, 417
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	40
BspPI	GGATC	1 cut(s)	223
BspTI	CTTAAG	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	94
BsrI	ACTGG	3 cut(s)	73, 130, 226
BssMI	GATC	2 cut(s)	215, 274
BssNI	GRCGYC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	152
BstACI	GRCGYC	1 cut(s)	303
BstAFI	CTTAAG	1 cut(s)	167
BstAPI	GCANNNNNTGC	1 cut(s)	110
BstC8I	GCNNGC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	41, 48, 321
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	218, 277
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	2 cut(s)	215, 274
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 206, 431
BstNSI	RCATGY	1 cut(s)	87
BstSLI	GKGCMC	2 cut(s)	144, 163
BstV1I	GCAGC	2 cut(s)	125, 385
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	1 cut(s)	444
BtsIMutI	CAGTG	3 cut(s)	157, 313, 444
Cac8I	GCNNGC	1 cut(s)	144
CseI	GACGC	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	45, 81, 373
CviAII	CATG	6 cut(s)	35, 84, 110, 131, 278, 345
CviJI	RGCY	5 cut(s)	116, 129, 173, 270, 434
CviKI_1	RGCY	5 cut(s)	116, 129, 173, 270, 434
CviQI	GTAC	3 cut(s)	45, 81, 373
DdeI	CTNAG	3 cut(s)	41, 48, 321
DpnI	GATC	2 cut(s)	217, 276
DpnII	GATC	2 cut(s)	215, 274
EaeI	YGGCCR	1 cut(s)	127
FaeI	CATG	6 cut(s)	38, 87, 113, 134, 281, 348
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	6 cut(s)	34, 83, 109, 130, 277, 344
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	2 cut(s)	114, 399
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	114, 399
FspBI	CTAG	2 cut(s)	210, 272
GluI	GCNGC	2 cut(s)	114, 399
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	303
Hin1II	CATG	6 cut(s)	38, 87, 113, 134, 281, 348
HphI	GGTGA	2 cut(s)	346, 374
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	220
Hpy8I	GTNNAC	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	91, 362, 401
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4V	TGCA	5 cut(s)	87, 113, 161, 385, 401
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 206, 431
HpyF3I	CTNAG	3 cut(s)	41, 48, 321
Hsp92I	GRCGYC	1 cut(s)	303
Hsp92II	CATG	6 cut(s)	38, 87, 113, 134, 281, 348
Kzo9I	GATC	2 cut(s)	215, 274
LpnPI	CCDG	5 cut(s)	54, 111, 237, 239, 389
Lsp1109I	GCAGC	2 cut(s)	125, 385
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	2 cut(s)	210, 272
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	2 cut(s)	217, 276
MboI	GATC	2 cut(s)	215, 274
MboII	GAAGA	3 cut(s)	146, 349, 377
MflI	RGATCY	1 cut(s)	215
MhlI	GDGCHC	2 cut(s)	144, 163
MlsI	TGGCCA	1 cut(s)	129
MluCI	AATT	1 cut(s)	55
MluNI	TGGCCA	1 cut(s)	129
MnlI	CCTC	2 cut(s)	127, 445
Mox20I	TGGCCA	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	129
MseI	TTAA	2 cut(s)	168, 451
MslI	CAYNNNNRTG	2 cut(s)	135, 380
Msp20I	TGGCCA	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	387
MwoI	GCNNNNNNNGC	3 cut(s)	110, 206, 431
NdeII	GATC	2 cut(s)	215, 274
NlaIII	CATG	6 cut(s)	38, 87, 113, 134, 281, 348
NspI	RCATGY	1 cut(s)	87
PctI	GAATGC	1 cut(s)	387
PkrI	GCNGC	2 cut(s)	115, 400
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	3 cut(s)	46, 82, 374
RsaNI	GTAC	3 cut(s)	45, 81, 373
RseI	CAYNNNNRTG	2 cut(s)	135, 380
SaqAI	TTAA	2 cut(s)	168, 451
SatI	GCNGC	2 cut(s)	114, 399
Sau3AI	GATC	2 cut(s)	215, 274
ScaI	AGTACT	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	144, 163
SetI	ASST	2 cut(s)	190, 412
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	2 cut(s)	135, 380
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	1 cut(s)	55
SsiI	CCGC	3 cut(s)	144, 288, 417
SspMI	CTAG	2 cut(s)	210, 272
TaaI	ACNGT	1 cut(s)	152
TaqI	TCGA	1 cut(s)	119
TasI	AATT	1 cut(s)	55
TatI	WGTACW	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	168, 451
Tru9I	TTAA	2 cut(s)	168, 451
TscAI	CASTG	3 cut(s)	157, 313, 451
TseI	GCWGC	2 cut(s)	113, 398
TspDTI	ATGAA	2 cut(s)	10, 147
TspRI	CASTG	3 cut(s)	157, 313, 451
Vha464I	CTTAAG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	159
XceI	RCATGY	1 cut(s)	87
XspI	CTAG	2 cut(s)	210, 272
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.