pycom16g20640

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
18498256 .. 18498925
670 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g20640.1

Sequence Viewer

Length: 468 bp
ATGGAGTCCATTAACCAGTGCTACTGCAAATGTATCTGTTTGGCTTTGATCTTCATGTTGGGAGCCTTGTCTTCTCAAGCCACTTCTCGTGCTCTCCAAGATGCATCAATGTATGGGAAATACGAGCAATGGATGGCTCGTTATGGACGTGTATATACCGACATTAACGAGAAGGAGAAGCGTTTCAACATATTCAAGGAAAATGTGGCATTTATTGAATCTTCCAATAAGGATGCAAACAAACTTTACAAATTGAGCGTCAATCAATTTGCAGACCTTACAAATGAACAATTCGAAGCCTCAAGAAATGGATTCATGGGGCACGAATGTTCAGCAAAGACTTCTTTCAAATATGAAAATGTTACCGCACCACCAACTGTAGATTGGAGAAAGAAAGGAGCCGTTACACCCATCAAGGACCAAGGCCAATGTGGGAAGGGATTACAAAGCTCACAACTGGTAAATTGA

Protein Analysis

156

Amino Acids

17.56

Weight (kDa)

8.7

Isoelectric Point (pI)

36.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 41 - 98 2e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 366
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 4 cut(s) 187, 196, 218, 349
AjiI CACGTC 1 cut(s) 149
AluBI AGCT 1 cut(s) 450
AluI AGCT 1 cut(s) 450
Alw21I GWGCWC 1 cut(s) 94
AoxI GGCC 1 cut(s) 424
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
Asp700I GAANNNNTTC 1 cut(s) 182
AspS9I GGNCC 1 cut(s) 418
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 324
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 2 cut(s) 127, 419
BceAI ACGGC 1 cut(s) 386
BfmI CTRYAG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 64, 400
BmsI GCATC 3 cut(s) 91, 113, 223
BpiI GAAGAC 1 cut(s) 63
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 2 cut(s) 60, 286
BsaJI CCNNGG 1 cut(s) 421
Bse1I ACTGG 2 cut(s) 16, 462
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 421
BseGI GGATG 2 cut(s) 138, 238
BseMI GCAATG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 16, 462
BseSI GKGCMC 1 cut(s) 324
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 94
BsnI GGCC 1 cut(s) 426
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 94, 324
Bsp143I GATC 1 cut(s) 48
BspACI CCGC 1 cut(s) 366
BspANI GGCC 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 64, 400
BspT104I TTCGAA 1 cut(s) 294
BsrDI GCAATG 1 cut(s) 134
BsrI ACTGG 2 cut(s) 16, 462
BssECI CCNNGG 1 cut(s) 421
BssMI GATC 1 cut(s) 48
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 421
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 294
BstF5I GGATG 2 cut(s) 138, 238
BstKTI GATC 1 cut(s) 51
BstMBI GATC 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 426
BtrI CACGTC 1 cut(s) 149
BtsCI GGATG 2 cut(s) 138, 238
BtsIMutI CAGTG 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 418
CseI GACGC 1 cut(s) 247
CviAII CATG 2 cut(s) 55, 316
CviJI RGCY 8 cut(s) 44, 65, 80, 137, 299, 401, 426, 450
CviKI_1 RGCY 8 cut(s) 44, 65, 80, 137, 299, 401, 426, 450
DpnI GATC 1 cut(s) 50
DpnII GATC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 421
Eco47I GGWCC 1 cut(s) 418
EcoT14I CCWWGG 1 cut(s) 421
EcoT22I ATGCAT 1 cut(s) 106
ErhI CCWWGG 1 cut(s) 421
FaeI CATG 2 cut(s) 58, 319
FaiI YATR 8 cut(s) 56, 114, 144, 154, 156, 191, 317, 354
FatI CATG 2 cut(s) 54, 315
FokI GGATG 2 cut(s) 145, 245
HaeIII GGCC 1 cut(s) 426
HgaI GACGC 1 cut(s) 247
Hin1II CATG 2 cut(s) 58, 319
HinfI GANTC 3 cut(s) 5, 218, 312
Hpy188III TCNNGA 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 166, 430
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 27, 104, 236, 272
HpySE526I ACGT 1 cut(s) 148
Hsp92II CATG 2 cut(s) 58, 319
Kzo9I GATC 1 cut(s) 48
LmnI GCTCC 2 cut(s) 62, 398
LpnPI CCDG 2 cut(s) 29, 443
LweI GCATC 3 cut(s) 91, 113, 223
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 2 cut(s) 361, 403
MalI GATC 1 cut(s) 50
MboI GATC 1 cut(s) 48
MboII GAAGA 3 cut(s) 43, 63, 213
MhlI GDGCHC 2 cut(s) 94, 324
MluCI AATT 4 cut(s) 251, 266, 290, 463
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 1 cut(s) 310
Mph1103I ATGCAT 1 cut(s) 106
MroXI GAANNNNTTC 1 cut(s) 182
MseI TTAA 2 cut(s) 12, 165
NdeII GATC 1 cut(s) 48
NlaIII CATG 2 cut(s) 58, 319
NlaIV GGNNCC 2 cut(s) 64, 400
NsiI ATGCAT 1 cut(s) 106
NspV TTCGAA 1 cut(s) 294
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 218, 312
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 64, 400
PspPI GGNCC 1 cut(s) 418
SaqAI TTAA 2 cut(s) 12, 165
Sau3AI GATC 1 cut(s) 48
Sau96I GGNCC 1 cut(s) 418
SchI GAGTC 1 cut(s) 14
SduI GDGCHC 2 cut(s) 94, 324
SetI ASST 3 cut(s) 151, 279, 452
SfaNI GCATC 3 cut(s) 91, 113, 223
SfcI CTRYAG 1 cut(s) 378
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 418
SmlI CTYRAG 2 cut(s) 75, 301
SmoI CTYRAG 2 cut(s) 75, 301
Sse9I AATT 4 cut(s) 251, 266, 290, 463
SsiI CCGC 1 cut(s) 366
StyI CCWWGG 1 cut(s) 421
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 294
TasI AATT 4 cut(s) 251, 266, 290, 463
TfiI GAWTC 2 cut(s) 218, 312
Tru1I TTAA 2 cut(s) 12, 165
Tru9I TTAA 2 cut(s) 12, 165
TscAI CASTG 1 cut(s) 23
TspDTI ATGAA 4 cut(s) 43, 300, 304, 369
TspRI CASTG 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 418
XcmI CCANNNNNNNNNTGG 2 cut(s) 381, 428
XmnI GAANNNNTTC 1 cut(s) 182
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.