MD17G1231700.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
27990003 .. 27991152
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1231700.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGAGAACCTAAACCTGCAGCTATGGAAGTATATGTGCTTGGGTTTGATCCTCATGTTGGGAGCTTGGTCTTCTCAAGCCACTTCTCGCAGTCTGCAAGATGCATCAATGTATGGGAGATACGAGCAATGGTTGGCTCGTTATGGCCGTGTATATAATGACGTCGATGAGAAGGAAACTCGTTTCAAGATATTTAAGGAAAATGTGGCGTTTATAGAATCTTCTAATAAGGATGCAAACAAACCTTACAAATTAAGCGTCAATCAATTTTCAGACCTTACAAATGAAGAGTTCAAAGCCTCAGAAATGGATTCAAGGGCCATGAATGATGCTGTTGGGCTTTTTCAGCAGTTGCCGCCACCGAAGGTGTTACACAGCTTACAAACTGGTAAATTGATCTCTTTGTCTGAGCAAGAGCTCGTTGATTGTGACACCGCTGGTGAAGACCAAGGTTGTGAGGGTGGCTTAATGGACGATGCGTTTCGTTTCAGTTCATCCAACAAAAATCACGGTATTAGCACAGAAACTAATTACCCCTACAACGGTGTTGATGGTACATGTAACACCAAGAAGGAAGCCATCATTGCAGCCAAGATAACTGGCTTTGAGGATGTGCCTGCAAATAGTGAAAAGGCCCTTCTAACCGCTGTTGCTCATCAACCTGTTTCCGTTGCCATCGATGCTAGCGGTTCCGACTTCCAATTCTATTCAAGTGGTGTCTTCACCGGAACTTGTGGAACGAGTCTTGACCATGGTGTTACCGCTGTTGGATATGGCGTGAGTGAGGATGGGACTAAGTATTGGCTAGTGAAGAACTCATGGGGTGCAGAATGGGGCGAAACTGGGTACATAAGAATGCAAAGAGATGTTGCTGCACCTGAAGGACTTTGTGGGATTGCTATGTCTGCCTCTTACCCCACAGCTTAG

Protein Analysis

309

Amino Acids

33.77

Weight (kDa)

4.75

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 41 - 98 8.6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 307 3.8e-61 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 24
AciI CCGC 5 cut(s) 356, 435, 645, 687, 762
AclWI GGATC 1 cut(s) 43
AcoI YGGCCR 1 cut(s) 145
AcuI CTGAAG 1 cut(s) 900
AcyI GRCGYC 1 cut(s) 162
AfaI GTAC 2 cut(s) 556, 848
AfiI CCNNNNNNNGG 2 cut(s) 58, 542
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 4 cut(s) 187, 295, 315, 711
AluBI AGCT 5 cut(s) 22, 65, 378, 418, 923
AluI AGCT 5 cut(s) 22, 65, 378, 418, 923
Alw21I GWGCWC 1 cut(s) 420
AlwI GGATC 1 cut(s) 43
AoxI GGCC 3 cut(s) 145, 318, 633
ApeKI GCWGC 3 cut(s) 19, 587, 872
ArsI GACNNNNNNTTYG 2 cut(s) 243, 275
AspS9I GGNCC 2 cut(s) 318, 634
AsuHPI GGTGA 2 cut(s) 452, 715
AsuNHI GCTAGC 1 cut(s) 683
BanII GRGCYC 1 cut(s) 420
BbsI GAAGAC 3 cut(s) 63, 450, 712
Bbv12I GWGCWC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 31, 599, 859
BccI CCATC 4 cut(s) 545, 587, 683, 782
BceAI ACGGC 1 cut(s) 132
BfaI CTAG 2 cut(s) 684, 806
BfmI CTRYAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 24
BisI GCNGC 4 cut(s) 20, 356, 588, 873
BlsI GCNGC 4 cut(s) 21, 357, 589, 874
BmgT120I GGNCC 2 cut(s) 318, 634
BmiI GGNNCC 1 cut(s) 691
BmrI ACTGGG 1 cut(s) 852
BmsI GCATC 6 cut(s) 91, 113, 223, 319, 466, 670
BmtI GCTAGC 1 cut(s) 687
BmuI ACTGGG 1 cut(s) 852
BpiI GAAGAC 3 cut(s) 63, 450, 712
BpuEI CTTGAG 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 162
BsaJI CCNNGG 2 cut(s) 448, 751
BsaWI WCCGGW 1 cut(s) 725
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 542
Bse1I ACTGG 3 cut(s) 391, 604, 847
Bse3DI GCAATG 2 cut(s) 134, 582
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 448, 751
BseGI GGATG 4 cut(s) 238, 494, 616, 793
BseLI CCNNNNNNNGG 2 cut(s) 58, 542
BseMI GCAATG 2 cut(s) 134, 582
BseMII CTCAG 2 cut(s) 315, 399
BseNI ACTGG 3 cut(s) 391, 604, 847
BseXI GCAGC 3 cut(s) 31, 599, 859
BsgI GTGCAG 2 cut(s) 846, 858
BshFI GGCC 3 cut(s) 147, 320, 635
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 1 cut(s) 420
BsiSI CCGG 1 cut(s) 726
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 2 cut(s) 58, 542
BsmFI GGGAC 1 cut(s) 805
BsmI GAATGC 1 cut(s) 861
BsnI GGCC 3 cut(s) 147, 320, 635
Bsp1286I GDGCHC 1 cut(s) 420
Bsp143I GATC 2 cut(s) 48, 396
Bsp19I CCATGG 1 cut(s) 751
BspACI CCGC 5 cut(s) 356, 435, 645, 687, 762
BspANI GGCC 3 cut(s) 147, 320, 635
BspCNI CTCAG 2 cut(s) 314, 400
BspDI ATCGAT 1 cut(s) 678
BspLI GGNNCC 1 cut(s) 691
BspMAI CTGCAG 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 24
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 1 cut(s) 43
BsrDI GCAATG 2 cut(s) 134, 582
BsrI ACTGG 3 cut(s) 391, 604, 847
BssECI CCNNGG 2 cut(s) 448, 751
BssMI GATC 2 cut(s) 48, 396
BssNI GRCGYC 1 cut(s) 162
BssT1I CCWWGG 2 cut(s) 448, 751
Bst4CI ACNGT 2 cut(s) 512, 545
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 618, 685
BstDEI CTNAG 4 cut(s) 301, 408, 795, 924
BstDSI CCRYGG 1 cut(s) 751
BstF5I GGATG 4 cut(s) 238, 494, 616, 793
BstKTI GATC 2 cut(s) 51, 399
BstMBI GATC 2 cut(s) 48, 396
BstMWI GCNNNNNNNGC 5 cut(s) 346, 355, 584, 680, 905
BstNSI RCATGY 1 cut(s) 561
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 31, 599, 859
BstV2I GAAGAC 3 cut(s) 63, 450, 712
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 3 cut(s) 147, 320, 635
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 751
BtsCI GGATG 4 cut(s) 238, 494, 616, 793
BveI ACCTGC 1 cut(s) 24
Cac8I GCNNGC 2 cut(s) 618, 685
Cfr13I GGNCC 2 cut(s) 318, 634
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 555, 847
CviAII CATG 5 cut(s) 55, 322, 558, 752, 819
CviQI GTAC 2 cut(s) 555, 847
DdeI CTNAG 4 cut(s) 301, 408, 795, 924
DpnI GATC 2 cut(s) 50, 398
DpnII GATC 2 cut(s) 48, 396
EaeI YGGCCR 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Ecl136II GAGCTC 1 cut(s) 418
Eco130I CCWWGG 2 cut(s) 448, 751
Eco24I GRGCYC 1 cut(s) 420
Eco53kI GAGCTC 1 cut(s) 418
Eco57I CTGAAG 1 cut(s) 900
EcoICRI GAGCTC 1 cut(s) 418
EcoO109I RGGNCCY 1 cut(s) 634
EcoT14I CCWWGG 2 cut(s) 448, 751
EcoT22I ATGCAT 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 420
ErhI CCWWGG 2 cut(s) 448, 751
FaeI CATG 5 cut(s) 58, 325, 561, 755, 822
FaqI GGGAC 1 cut(s) 805
FatI CATG 5 cut(s) 54, 321, 557, 751, 818
Fnu4HI GCNGC 4 cut(s) 20, 356, 588, 873
FokI GGATG 4 cut(s) 245, 481, 623, 800
FriOI GRGCYC 1 cut(s) 420
Fsp4HI GCNGC 4 cut(s) 20, 356, 588, 873
FspBI CTAG 2 cut(s) 684, 806
GluI GCNGC 4 cut(s) 20, 356, 588, 873
HaeIII GGCC 3 cut(s) 147, 320, 635
HapII CCGG 1 cut(s) 726
HgaI GACGC 1 cut(s) 247
Hin1I GRCGYC 1 cut(s) 162
Hin1II CATG 5 cut(s) 58, 325, 561, 755, 822
HinfI GANTC 3 cut(s) 218, 311, 742
HpaII CCGG 1 cut(s) 726
HphI GGTGA 2 cut(s) 452, 715
Hpy188I TCNGA 4 cut(s) 274, 304, 409, 694
Hpy188III TCNNGA 2 cut(s) 187, 746
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 5 cut(s) 166, 358, 565, 647, 875
HpyCH4III ACNGT 2 cut(s) 512, 545
HpyCH4IV ACGT 1 cut(s) 162
HpyCH4V TGCA 9 cut(s) 19, 97, 104, 236, 587, 620, 827, 859, 875
HpyF10VI GCNNNNNNNGC 5 cut(s) 346, 355, 584, 680, 905
HpyF3I CTNAG 4 cut(s) 301, 408, 795, 924
HpySE526I ACGT 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 162
Hsp92II CATG 5 cut(s) 58, 325, 561, 755, 822
Kzo9I GATC 2 cut(s) 48, 396
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 9 cut(s) 29, 372, 423, 585, 630, 675, 739, 828, 891
Lsp1109I GCAGC 3 cut(s) 31, 599, 859
LweI GCATC 6 cut(s) 91, 113, 223, 319, 466, 670
MaeI CTAG 2 cut(s) 684, 806
MaeII ACGT 1 cut(s) 162
MaeIII GTNAC 4 cut(s) 369, 428, 560, 757
MalI GATC 2 cut(s) 50, 398
MboI GATC 2 cut(s) 48, 396
MboII GAAGA 6 cut(s) 63, 213, 299, 455, 712, 823
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 5 cut(s) 251, 266, 392, 529, 701
MlyI GAGTC 1 cut(s) 751
MmeI TCCRAC 3 cut(s) 522, 717, 748
MnlI CCTC 6 cut(s) 62, 310, 451, 601, 778, 919
Mph1103I ATGCAT 1 cut(s) 106
MseI TTAA 3 cut(s) 195, 254, 467
MslI CAYNNNNRTG 1 cut(s) 854
MspA1I CMGCKG 3 cut(s) 437, 647, 764
MspI CCGG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 861
MwoI GCNNNNNNNGC 5 cut(s) 346, 355, 584, 680, 905
NcoI CCATGG 1 cut(s) 751
NdeII GATC 2 cut(s) 48, 396
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 5 cut(s) 58, 325, 561, 755, 822
NlaIV GGNNCC 1 cut(s) 691
NmuCI GTSAC 1 cut(s) 428
NsiI ATGCAT 1 cut(s) 106
NspI RCATGY 1 cut(s) 561
PciI ACATGT 1 cut(s) 557
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PctI GAATGC 1 cut(s) 861
PfeI GAWTC 2 cut(s) 218, 311
PkrI GCNGC 4 cut(s) 21, 357, 589, 874
PleI GAGTC 1 cut(s) 750
PpsI GAGTC 1 cut(s) 750
PscI ACATGT 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 691
PspPI GGNCC 2 cut(s) 318, 634
PstI CTGCAG 1 cut(s) 21
RsaI GTAC 2 cut(s) 556, 848
RsaNI GTAC 2 cut(s) 555, 847
RseI CAYNNNNRTG 1 cut(s) 854
SacI GAGCTC 1 cut(s) 420
SaqAI TTAA 3 cut(s) 195, 254, 467
SatI GCNGC 4 cut(s) 20, 356, 588, 873
Sau3AI GATC 2 cut(s) 48, 396
Sau96I GGNCC 2 cut(s) 318, 634
SchI GAGTC 1 cut(s) 751
SduI GDGCHC 1 cut(s) 420
SfaNI GCATC 6 cut(s) 91, 113, 223, 319, 466, 670
SfcI CTRYAG 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 854
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 5 cut(s) 251, 266, 392, 529, 701
SsiI CCGC 5 cut(s) 356, 435, 645, 687, 762
SspMI CTAG 2 cut(s) 684, 806
SstI GAGCTC 1 cut(s) 420
StyI CCWWGG 2 cut(s) 448, 751
TaaI ACNGT 2 cut(s) 512, 545
TaiI ACGT 1 cut(s) 165
TaqI TCGA 2 cut(s) 165, 678
TasI AATT 5 cut(s) 251, 266, 392, 529, 701
TauI GCSGC 1 cut(s) 358
TfiI GAWTC 2 cut(s) 218, 311
Tru1I TTAA 3 cut(s) 195, 254, 467
Tru9I TTAA 3 cut(s) 195, 254, 467
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 3 cut(s) 19, 587, 872
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 3 cut(s) 300, 338, 483
TspGWI ACGGA 1 cut(s) 658
XceI RCATGY 1 cut(s) 561
XspI CTAG 2 cut(s) 684, 806
ZraI GACGTC 1 cut(s) 163
Zsp2I ATGCAT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.