MD16G1226900.v1.1

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
23003789 .. 23004968
1180 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1226900.v1.1.491

Sequence Viewer

Length: 1017 bp
ATGGAGTACTACTGCAAGTGCATGTGTTTTGCCTTGATCTTCATGTTGGGAGCCTTGTCTTCTCACGCCACTTCTCGCACTCTTCAAGATCCATCAATGTATGGGAAATACGAGCAATGGATGGCTCATTATGGACGTGTCTATACCAACATTAACGAGAAGGAGAAGCGTTTCAATATATTCAAAGCAAATGTGGATTTTATAGAATCTTCCAACAACGATGCAAATAAACCATACAAATTGAAGGTCAATCAATTTGCAGACCTTACAAATGAAGAATTCAAAGCATCTAGAAATAGATTCATGGGGCATGAATGTTCCACAAAGACGACTTCTTTCAAATATGAAAATGTTACAGCACCAGCTACTGTAGATTGGAGAAAGAAAGGAGCTGTAACACCCATCAAGGACCAAGGCCAATGTGGATGTTGCTGGGCTTTTTCAGCTGTGGCAGCTATGGAAGGGATTACTAAGCTTACAACTGGTAAATTGATATCTTTGTCTGAGCAGGAGCTAGTTGATTGTGACACAAGCGGTGTGGACCAAGGTTGTGAGGGTGGTCTAATGGATGATGCATTTCAGTTCATCACTCAAAACCATGGGCTTAGTACCGAAACTAATTACCCTTACACGGGTGTTGATGGTACTTGCAACACCAAGAAGGAGGCCAGTCATGCAGCCACGATAACTGGCCACGAAGATGTGCCTGCAAACAGTGAAGCTGCCCTTTTGAAGGCTGTTGCTAATCAACCAATTTCTGTTGCCATTGATGCTGGTGGTTCCGACTTTCAATTCTATTCAAGTGGTGTCTTTACAGGAACTTGTGGAACAAGTCTTGATCACGGGGTTACCGCAGTTGGTTTTGGAGTAAGTGCTGATGGGACCAAGTATTGGTTGGTGAAGAACTCATGGGGCGCAGAATGGGGTGAAGAAGGGTACATAAGAATGCAAAGAGATGTTGAGGCAAAGGAAGGTCTTTGTGGCATTGCTATGGAAGCCTCGTACCCCACTGCATAA

Protein Analysis

339

Amino Acids

36.96

Weight (kDa)

5.17

Isoelectric Point (pI)

19.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 37 - 94 1.4e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 121 - 337 2.6e-84 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 891
AciI CCGC 2 cut(s) 534, 852
AclWI GGATC 1 cut(s) 83
AcoI YGGCCR 1 cut(s) 691
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 5 cut(s) 8, 610, 646, 938, 1004
AfiI CCNNNNNNNGG 4 cut(s) 631, 632, 733, 891
AflIII ACRYGT 1 cut(s) 136
AgsI TTSAA 9 cut(s) 86, 175, 184, 244, 283, 340, 733, 791, 801
AjiI CACGTC 1 cut(s) 137
AluBI AGCT 7 cut(s) 365, 392, 446, 455, 475, 514, 722
AluI AGCT 7 cut(s) 365, 392, 446, 455, 475, 514, 722
AlwI GGATC 1 cut(s) 83
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 3 cut(s) 415, 666, 691
ApeKI GCWGC 3 cut(s) 452, 677, 722
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
Asp700I GAANNNNTTC 1 cut(s) 170
AspLEI GCGC 1 cut(s) 917
AspS9I GGNCC 3 cut(s) 409, 541, 882
AsuHPI GGTGA 2 cut(s) 910, 938
AvaII GGWCC 3 cut(s) 409, 541, 882
BalI TGGCCA 1 cut(s) 693
BbsI GAAGAC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 464, 689, 709
BccI CCATC 5 cut(s) 100, 115, 410, 635, 872
BclI TGATCA 1 cut(s) 838
BfaI CTAG 2 cut(s) 291, 515
BfmI CTRYAG 1 cut(s) 369
BisI GCNGC 3 cut(s) 453, 678, 723
BlsI GCNGC 3 cut(s) 454, 679, 724
BmcAI AGTACT 1 cut(s) 8
Bme18I GGWCC 3 cut(s) 409, 541, 882
BmgBI CACGTC 1 cut(s) 137
BmgT120I GGNCC 3 cut(s) 409, 541, 882
BmiI GGNNCC 3 cut(s) 52, 781, 883
BmsI GCATC 4 cut(s) 211, 296, 562, 760
BpiI GAAGAC 1 cut(s) 51
BsaJI CCNNGG 3 cut(s) 412, 544, 598
Bsc4I CCNNNNNNNGG 4 cut(s) 631, 632, 733, 891
Bse1I ACTGG 3 cut(s) 487, 669, 694
Bse3DI GCAATG 2 cut(s) 122, 984
BseDI CCNNGG 3 cut(s) 412, 544, 598
BseGI GGATG 3 cut(s) 126, 431, 574
BseLI CCNNNNNNNGG 4 cut(s) 631, 632, 733, 891
BseMI GCAATG 2 cut(s) 122, 984
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 3 cut(s) 487, 669, 694
BseXI GCAGC 3 cut(s) 464, 689, 709
BseYI CCCAGC 1 cut(s) 432
BshFI GGCC 3 cut(s) 417, 668, 693
BslFI GGGAC 1 cut(s) 895
BslI CCNNNNNNNGG 4 cut(s) 631, 632, 733, 891
BsmFI GGGAC 1 cut(s) 895
BsmI GAATGC 1 cut(s) 951
BsnI GGCC 3 cut(s) 417, 668, 693
Bsp143I GATC 3 cut(s) 36, 88, 838
Bsp19I CCATGG 1 cut(s) 598
BspACI CCGC 2 cut(s) 534, 852
BspANI GGCC 3 cut(s) 417, 668, 693
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 3 cut(s) 52, 781, 883
BspPI GGATC 1 cut(s) 83
BsrDI GCAATG 2 cut(s) 122, 984
BsrI ACTGG 3 cut(s) 487, 669, 694
BssECI CCNNGG 3 cut(s) 412, 544, 598
BssMI GATC 3 cut(s) 36, 88, 838
BssT1I CCWWGG 3 cut(s) 412, 544, 598
Bst4CI ACNGT 2 cut(s) 370, 716
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 708
BstDEI CTNAG 3 cut(s) 471, 504, 605
BstDSI CCRYGG 1 cut(s) 598
BstEII GGTNACC 1 cut(s) 847
BstENI CCTNNNNNAGG 1 cut(s) 731
BstF5I GGATG 3 cut(s) 126, 431, 574
BstHHI GCGC 1 cut(s) 917
BstKTI GATC 3 cut(s) 39, 91, 841
BstMBI GATC 3 cut(s) 36, 88, 838
BstMWI GCNNNNNNNGC 5 cut(s) 443, 452, 674, 770, 995
BstNSI RCATGY 1 cut(s) 25
BstPI GGTNACC 1 cut(s) 847
BstSFI CTRYAG 1 cut(s) 369
BstV1I GCAGC 3 cut(s) 464, 689, 709
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 3 cut(s) 417, 668, 693
BtgI CCRYGG 1 cut(s) 598
BtrI CACGTC 1 cut(s) 137
BtsCI GGATG 3 cut(s) 126, 431, 574
BtsI GCAGTG 1 cut(s) 1008
BtsIMutI CAGTG 2 cut(s) 721, 1008
Cac8I GCNNGC 1 cut(s) 708
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 917
Cfr13I GGNCC 3 cut(s) 409, 541, 882
Csp6I GTAC 5 cut(s) 7, 609, 645, 937, 1003
CspCI CAANNNNNGTGG 2 cut(s) 519, 554
CviAII CATG 7 cut(s) 22, 43, 304, 311, 599, 674, 909
CviQI GTAC 5 cut(s) 7, 609, 645, 937, 1003
DdeI CTNAG 3 cut(s) 471, 504, 605
DpnI GATC 3 cut(s) 38, 90, 840
DpnII GATC 3 cut(s) 36, 88, 838
EaeI YGGCCR 1 cut(s) 691
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco130I CCWWGG 3 cut(s) 412, 544, 598
Eco32I GATATC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 409, 541, 882
Eco91I GGTNACC 1 cut(s) 847
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoO65I GGTNACC 1 cut(s) 847
EcoRI GAATTC 1 cut(s) 278
EcoRV GATATC 1 cut(s) 495
EcoT14I CCWWGG 3 cut(s) 412, 544, 598
EcoT22I ATGCAT 1 cut(s) 577
ErhI CCWWGG 3 cut(s) 412, 544, 598
FaeI CATG 7 cut(s) 25, 46, 307, 314, 602, 677, 912
FalI AAGNNNNNCTT 2 cut(s) 711, 743
FaqI GGGAC 1 cut(s) 895
FatI CATG 7 cut(s) 21, 42, 303, 310, 598, 673, 908
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 3 cut(s) 453, 678, 723
FokI GGATG 3 cut(s) 133, 438, 581
Fsp4HI GCNGC 3 cut(s) 453, 678, 723
FspBI CTAG 2 cut(s) 291, 515
GlaI GCGC 1 cut(s) 916
GluI GCNGC 3 cut(s) 453, 678, 723
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 3 cut(s) 417, 668, 693
HhaI GCGC 1 cut(s) 917
Hin1II CATG 7 cut(s) 25, 46, 307, 314, 602, 677, 912
Hin6I GCGC 1 cut(s) 915
HinP1I GCGC 1 cut(s) 915
HindIII AAGCTT 1 cut(s) 473
HinfI GANTC 2 cut(s) 206, 300
HphI GGTGA 2 cut(s) 910, 938
Hpy166II GTNNAC 1 cut(s) 541
Hpy188I TCNGA 2 cut(s) 505, 784
Hpy188III TCNNGA 3 cut(s) 86, 291, 836
Hpy8I GTNNAC 1 cut(s) 541
HpyAV CCTTC 7 cut(s) 154, 238, 455, 655, 727, 926, 965
HpyCH4III ACNGT 2 cut(s) 370, 716
HpyCH4IV ACGT 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 5 cut(s) 443, 452, 674, 770, 995
HpyF3I CTNAG 3 cut(s) 471, 504, 605
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 7 cut(s) 25, 46, 307, 314, 602, 677, 912
HspAI GCGC 1 cut(s) 915
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 3 cut(s) 36, 88, 838
LmnI GCTCC 3 cut(s) 50, 389, 511
LpnPI CCDG 9 cut(s) 375, 418, 468, 494, 675, 682, 720, 759, 801
Lsp1109I GCAGC 3 cut(s) 464, 689, 709
LweI GCATC 4 cut(s) 211, 296, 562, 760
MaeI CTAG 2 cut(s) 291, 515
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 4 cut(s) 352, 394, 524, 847
MalI GATC 3 cut(s) 38, 90, 840
MboI GATC 3 cut(s) 36, 88, 838
MboII GAAGA 8 cut(s) 31, 51, 74, 201, 287, 710, 913, 941
MflI RGATCY 1 cut(s) 88
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 7 cut(s) 239, 254, 278, 488, 619, 753, 791
MluNI TGGCCA 1 cut(s) 693
MmeI TCCRAC 2 cut(s) 237, 807
MnlI CCTC 4 cut(s) 547, 658, 955, 1009
Mox20I TGGCCA 1 cut(s) 693
Mph1103I ATGCAT 1 cut(s) 577
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 693
MseI TTAA 1 cut(s) 153
MslI CAYNNNNRTG 3 cut(s) 699, 944, 989
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 951
MwoI GCNNNNNNNGC 5 cut(s) 443, 452, 674, 770, 995
NcoI CCATGG 1 cut(s) 598
NdeII GATC 3 cut(s) 36, 88, 838
NlaIII CATG 7 cut(s) 25, 46, 307, 314, 602, 677, 912
NlaIV GGNNCC 3 cut(s) 52, 781, 883
NmuCI GTSAC 1 cut(s) 524
NsiI ATGCAT 1 cut(s) 577
NspI RCATGY 1 cut(s) 25
PctI GAATGC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 206, 300
PflMI CCANNNNNTGG 1 cut(s) 891
PkrI GCNGC 3 cut(s) 454, 679, 724
PspEI GGTNACC 1 cut(s) 847
PspFI CCCAGC 1 cut(s) 432
PspN4I GGNNCC 3 cut(s) 52, 781, 883
PspPI GGNCC 3 cut(s) 409, 541, 882
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 446
RsaI GTAC 5 cut(s) 8, 610, 646, 938, 1004
RsaNI GTAC 5 cut(s) 7, 609, 645, 937, 1003
RseI CAYNNNNRTG 3 cut(s) 699, 944, 989
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 453, 678, 723
Sau3AI GATC 3 cut(s) 36, 88, 838
Sau96I GGNCC 3 cut(s) 409, 541, 882
ScaI AGTACT 1 cut(s) 8
SfaNI GCATC 4 cut(s) 211, 296, 562, 760
SfcI CTRYAG 1 cut(s) 369
SinI GGWCC 3 cut(s) 409, 541, 882
SmiMI CAYNNNNRTG 3 cut(s) 699, 944, 989
Sse9I AATT 7 cut(s) 239, 254, 278, 488, 619, 753, 791
SsiI CCGC 2 cut(s) 534, 852
SspMI CTAG 2 cut(s) 291, 515
StyI CCWWGG 3 cut(s) 412, 544, 598
TaaI ACNGT 2 cut(s) 370, 716
TaiI ACGT 1 cut(s) 139
TasI AATT 7 cut(s) 239, 254, 278, 488, 619, 753, 791
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 206, 300
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 2 cut(s) 721, 1015
TseFI GTSAC 1 cut(s) 524
TseI GCWGC 3 cut(s) 452, 677, 722
Tsp45I GTSAC 1 cut(s) 524
TspDTI ATGAA 6 cut(s) 31, 288, 292, 327, 360, 574
TspRI CASTG 2 cut(s) 721, 1015
Van91I CCANNNNNTGG 1 cut(s) 891
VpaK11BI GGWCC 3 cut(s) 409, 541, 882
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 2 cut(s) 419, 892
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 291, 515
ZrmI AGTACT 1 cut(s) 8
Zsp2I ATGCAT 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.