Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

26253414 .. 26254253

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1242700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGGGCACGAATGTTCCACAAAGACGACTGCTTTCAAATATGAAAATGTTACTGCACCACCAACTGTAGATTGGAGAAACAAAGGAGCTGTGACACCAATCAAGGACCAAGGCCAATGCGGATGTTGTTGGGCTTTTTCAGCAGTGGCAGCCATGGAAGGGATTACTAAGCTTACAACTGGTAAACTGATATCTTTGTCTGAGCAAGAGCTGGTTGATTGTGACACAAGCGGTGTGGACCAAGGTTGCGAGGGTGGTTTGATGGATGATGCATTTCAATTCATTAATAAAAACCATGGACTTAGTACGGAGACTAATTATCCTTACACGGGTGTTGATGGTACTTGCAACACCAAGAAGGAGGCCAGCCATGCAGCAAAGATAACTGGCTACGAAGATGTGCCTGCAAATAGTGAAGAAGCCCTTTTGAAGGCTGTTGCAAATCAACCAATTTCTGTTGCCATTGATGCTGGAGGTTCGGATTTTCAATTCTATTCAAGCGGTGTCTTTACAGGAACTTGTGGAACAAGTCTTGATCATGGGGTTACCGCTGTTGGTTATGGAATTAGTGCTGATGGTACCAAGTATTGGTTGGTGAAGAACTCATGGGGCACCCAATGGGGTGAAGAAGGATACATAAGAATGCAAAGAGGTGTTGAGGCAAGGGAAGGTCTTTGTGGCATTGCTATGGAAGCTTCTTACCCCACTGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

238

Amino Acids

25.16

Weight (kDa)

4.7

Isoelectric Point (pI)

10.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	20 - 236	1.6e-86	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	578
AccB1I	GGYRCC	2 cut(s)	578, 611
AccB7I	CCANNNNNTGG	1 cut(s)	588
AciI	CCGC	4 cut(s)	120, 231, 501, 549
AfaI	GTAC	3 cut(s)	307, 343, 580
AfiI	CCNNNNNNNGG	4 cut(s)	159, 329, 430, 588
AgsI	TTSAA	5 cut(s)	37, 278, 430, 488, 498
AluBI	AGCT	4 cut(s)	89, 172, 211, 695
AluI	AGCT	4 cut(s)	89, 172, 211, 695
Alw26I	GTCTC	1 cut(s)	305
AoxI	GGCC	2 cut(s)	112, 363
ApeKI	GCWGC	2 cut(s)	149, 374
AseI	ATTAAT	1 cut(s)	285
Asp718I	GGTACC	1 cut(s)	578
AspS9I	GGNCC	2 cut(s)	106, 238
AsuHPI	GGTGA	2 cut(s)	607, 635
AvaII	GGWCC	2 cut(s)	106, 238
BaeGI	GKGCMC	2 cut(s)	9, 614
BanI	GGYRCC	2 cut(s)	578, 611
BbvI	GCAGC	2 cut(s)	161, 386
BccI	CCATC	3 cut(s)	256, 332, 569
BciVI	GTATCC	1 cut(s)	626
BclI	TGATCA	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	66
BfuI	GTATCC	1 cut(s)	626
BisI	GCNGC	2 cut(s)	150, 375
BlsI	GCNGC	2 cut(s)	151, 376
Bme18I	GGWCC	2 cut(s)	106, 238
BmgT120I	GGNCC	2 cut(s)	106, 238
BmiI	GGNNCC	2 cut(s)	580, 613
BmsI	GCATC	2 cut(s)	259, 457
BpmI	CTGGAG	1 cut(s)	492
BsaJI	CCNNGG	4 cut(s)	109, 153, 241, 295
Bsc4I	CCNNNNNNNGG	4 cut(s)	159, 329, 430, 588
Bse1I	ACTGG	2 cut(s)	184, 391
Bse3DI	GCAATG	1 cut(s)	681
BseDI	CCNNGG	4 cut(s)	109, 153, 241, 295
BseGI	GGATG	2 cut(s)	128, 271
BseLI	CCNNNNNNNGG	4 cut(s)	159, 329, 430, 588
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	1 cut(s)	192
BseNI	ACTGG	2 cut(s)	184, 391
BseSI	GKGCMC	2 cut(s)	9, 614
BseXI	GCAGC	2 cut(s)	161, 386
BsgI	GTGCAG	1 cut(s)	39
BshFI	GGCC	2 cut(s)	114, 365
BshNI	GGYRCC	2 cut(s)	578, 611
BslI	CCNNNNNNNGG	4 cut(s)	159, 329, 430, 588
BsmAI	GTCTC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	2 cut(s)	114, 365
Bsp1286I	GDGCHC	2 cut(s)	9, 614
Bsp143I	GATC	1 cut(s)	535
Bsp19I	CCATGG	2 cut(s)	153, 295
BspACI	CCGC	4 cut(s)	120, 231, 501, 549
BspANI	GGCC	2 cut(s)	114, 365
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	2 cut(s)	580, 613
BspT107I	GGYRCC	2 cut(s)	578, 611
BsrDI	GCAATG	1 cut(s)	681
BsrI	ACTGG	2 cut(s)	184, 391
BssECI	CCNNGG	4 cut(s)	109, 153, 241, 295
BssMI	GATC	1 cut(s)	535
BssT1I	CCWWGG	4 cut(s)	109, 153, 241, 295
Bst4CI	ACNGT	1 cut(s)	67
BstC8I	GCNNGC	2 cut(s)	367, 405
BstDEI	CTNAG	3 cut(s)	168, 201, 302
BstDSI	CCRYGG	2 cut(s)	153, 295
BstEII	GGTNACC	1 cut(s)	544
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	128, 271
BstKTI	GATC	1 cut(s)	538
BstMAI	GTCTC	1 cut(s)	305
BstMBI	GATC	1 cut(s)	535
BstMWI	GCNNNNNNNGC	5 cut(s)	140, 149, 371, 467, 692
BstPI	GGTNACC	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	2 cut(s)	9, 614
BstV1I	GCAGC	2 cut(s)	161, 386
BsuI	GTATCC	1 cut(s)	626
BsuRI	GGCC	2 cut(s)	114, 365
BtgI	CCRYGG	2 cut(s)	153, 295
BtsCI	GGATG	2 cut(s)	128, 271
BtsI	GCAGTG	2 cut(s)	150, 705
BtsIMutI	CAGTG	2 cut(s)	150, 705
Cac8I	GCNNGC	2 cut(s)	367, 405
Cfr13I	GGNCC	2 cut(s)	106, 238
Csp6I	GTAC	3 cut(s)	306, 342, 579
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	5 cut(s)	154, 296, 371, 539, 606
CviQI	GTAC	3 cut(s)	306, 342, 579
DdeI	CTNAG	3 cut(s)	168, 201, 302
DpnI	GATC	1 cut(s)	537
DpnII	GATC	1 cut(s)	535
Eco130I	CCWWGG	4 cut(s)	109, 153, 241, 295
Eco32I	GATATC	1 cut(s)	192
Eco47I	GGWCC	2 cut(s)	106, 238
Eco91I	GGTNACC	1 cut(s)	544
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO65I	GGTNACC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	192
EcoT14I	CCWWGG	4 cut(s)	109, 153, 241, 295
EcoT22I	ATGCAT	1 cut(s)	274
ErhI	CCWWGG	4 cut(s)	109, 153, 241, 295
FaeI	CATG	5 cut(s)	157, 299, 374, 542, 609
FaiI	YATR	9 cut(s)	42, 155, 297, 372, 540, 561, 607, 638, 689
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	5 cut(s)	153, 295, 370, 538, 605
FbaI	TGATCA	1 cut(s)	535
Fnu4HI	GCNGC	2 cut(s)	150, 375
FokI	GGATG	2 cut(s)	135, 278
Fsp4HI	GCNGC	2 cut(s)	150, 375
GluI	GCNGC	2 cut(s)	150, 375
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	2 cut(s)	114, 365
Hin1II	CATG	5 cut(s)	157, 299, 374, 542, 609
HindIII	AAGCTT	2 cut(s)	170, 693
HphI	GGTGA	2 cut(s)	607, 635
Hpy166II	GTNNAC	2 cut(s)	185, 238
Hpy188I	TCNGA	2 cut(s)	202, 481
Hpy188III	TCNNGA	1 cut(s)	533
Hpy8I	GTNNAC	2 cut(s)	185, 238
HpyAV	CCTTC	5 cut(s)	152, 352, 424, 623, 662
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	7 cut(s)	56, 272, 348, 374, 407, 440, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	140, 149, 371, 467, 692
HpyF3I	CTNAG	3 cut(s)	168, 201, 302
Hsp92II	CATG	5 cut(s)	157, 299, 374, 542, 609
KpnI	GGTACC	1 cut(s)	582
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	1 cut(s)	535
LmnI	GCTCC	1 cut(s)	86
LpnPI	CCDG	7 cut(s)	165, 197, 372, 379, 417, 456, 498
Lsp1109I	GCAGC	2 cut(s)	161, 386
LweI	GCATC	2 cut(s)	259, 457
MaeIII	GTNAC	4 cut(s)	49, 91, 221, 544
MalI	GATC	1 cut(s)	537
MboI	GATC	1 cut(s)	535
MboII	GAAGA	4 cut(s)	407, 428, 610, 638
MhlI	GDGCHC	2 cut(s)	9, 614
MluCI	AATT	5 cut(s)	278, 316, 450, 488, 564
MnlI	CCTC	5 cut(s)	244, 355, 467, 644, 652
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	1 cut(s)	285
MslI	CAYNNNNRTG	2 cut(s)	641, 686
MspA1I	CMGCKG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	648
MwoI	GCNNNNNNNGC	5 cut(s)	140, 149, 371, 467, 692
NcoI	CCATGG	2 cut(s)	153, 295
NdeII	GATC	1 cut(s)	535
NlaIII	CATG	5 cut(s)	157, 299, 374, 542, 609
NlaIV	GGNNCC	2 cut(s)	580, 613
NmuCI	GTSAC	2 cut(s)	91, 221
NsiI	ATGCAT	1 cut(s)	274
PctI	GAATGC	1 cut(s)	648
PflMI	CCANNNNNTGG	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	151, 376
PshBI	ATTAAT	1 cut(s)	285
PspEI	GGTNACC	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	580, 613
PspPI	GGNCC	2 cut(s)	106, 238
RsaI	GTAC	3 cut(s)	307, 343, 580
RsaNI	GTAC	3 cut(s)	306, 342, 579
RseI	CAYNNNNRTG	2 cut(s)	641, 686
SaqAI	TTAA	1 cut(s)	285
SatI	GCNGC	2 cut(s)	150, 375
Sau3AI	GATC	1 cut(s)	535
Sau96I	GGNCC	2 cut(s)	106, 238
SduI	GDGCHC	2 cut(s)	9, 614
SetI	ASST	8 cut(s)	91, 174, 213, 247, 478, 655, 673, 697
SfaNI	GCATC	2 cut(s)	259, 457
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	2 cut(s)	106, 238
SmiMI	CAYNNNNRTG	2 cut(s)	641, 686
Sse9I	AATT	5 cut(s)	278, 316, 450, 488, 564
SsiI	CCGC	4 cut(s)	120, 231, 501, 549
StyI	CCWWGG	4 cut(s)	109, 153, 241, 295
TaaI	ACNGT	1 cut(s)	67
TasI	AATT	5 cut(s)	278, 316, 450, 488, 564
Tru1I	TTAA	1 cut(s)	285
Tru9I	TTAA	1 cut(s)	285
TscAI	CASTG	2 cut(s)	150, 712
TseFI	GTSAC	2 cut(s)	91, 221
TseI	GCWGC	2 cut(s)	149, 374
Tsp45I	GTSAC	2 cut(s)	91, 221
TspDTI	ATGAA	2 cut(s)	57, 271
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	2 cut(s)	150, 712
Van91I	CCANNNNNTGG	1 cut(s)	588
VpaK11BI	GGWCC	2 cut(s)	106, 238
VspI	ATTAAT	1 cut(s)	285
XagI	CCTNNNNNAGG	1 cut(s)	428
XcmI	CCANNNNNNNNNTGG	2 cut(s)	69, 589
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.