Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

48141956 .. 48143313

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG227600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGGAGTTCACCAACCAGAGCAAATGCATCTGCAGTTTGGCATTGGTCCTCATGTTGGCGGCTTGGTCTTCGGAAGCCACTTCTCGTAGTCTCCAAGATGCATTAGCTTATGGGAGGTACGAGCAATGGATAGCTCGTTATGGTCGTGTATACAATGACATCAACGAGAAGGAGGAGCGCTTCAAGATATTCAAGGACAATGAGGCATTTGTAGAATCTTCCAACAAAGATGGAAACAAACTTTACAAATTGAGTCTGAATCAATTTGCAGACCTTACAAATGAAGAGTTCACTGCCTCAAGAAATGGATTCAAGGGCCACGAATGTTCCACGAAAACCACTACTTTCAAGTATGAAAATTCAACTGTGCCGGCTACAATGGACTGGAGAAAGAAGGGAGCTGTAACTCCCGTCAAGGATCAAGGCCAATGTGGAAGTTGTTGGGCATTCTCAGCAGTGGGAGCTATGGAAGGAATCACTCAACTTACAACTGGTAAACTAATCTCTTTGTCTGAGCAAGAGCTGGTTGACTGTGATGTCAAAGGTGTAGACGAAGGCTGTTCAGGTGGCCTTATGGACGATGCCTTTCAGTTCGTCATTCAAAATCATGGTATTAATACCGAGGCTAATTATCCCTACACGGCTGTTGATGGTACATGCAATGCCAAGGCGGAAGCTGGCCATGCAGCCACGATAACCGGCCACGAAGATGTGCCTGCAAACAGCGAAATCGCCCTTCTTAAGGCCGTGGCTAATCAACCTATTTCTGTTGCCATTGACGCTAGTGGATATGACTTCCAGTTATATTCAAGTGGTGTTTTCACAGGAACATGTGGAACGGAGCTAGACCATGGTGTTACAGCTGTTGGTTATGGCGTGAGTGCTGATGGGACTAAGTACTGGTTGGTAAAGAACTCATGGGGTGCACAATGGGGTGAAGAAGGTTATATAAGAATGCAAAGAGATGTTGCTGCACCGGGAGGCCTTTGTGGCATTGCCATGGAAGCCTCTTACCCCACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

341

Amino Acids

36.95

Weight (kDa)

4.8

Isoelectric Point (pI)

18.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	40 - 97	1.8e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	123 - 340	1.7e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	536
AccI	GTMKAC	2 cut(s)	150, 549
AciI	CCGC	2 cut(s)	59, 671
AclWI	GGATC	1 cut(s)	426
AcoI	YGGCCR	2 cut(s)	679, 700
AcsI	RAATTY	1 cut(s)	358
AfaI	GTAC	3 cut(s)	119, 655, 899
AfeI	AGCGCT	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	55, 742
AflII	CTTAAG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	830
AgsI	TTSAA	7 cut(s)	184, 193, 313, 349, 363, 602, 810
AluBI	AGCT	8 cut(s)	107, 134, 401, 464, 523, 677, 844, 863
AluI	AGCT	8 cut(s)	107, 134, 401, 464, 523, 677, 844, 863
Alw21I	GWGCWC	1 cut(s)	928
Alw26I	GTCTC	1 cut(s)	95
Alw44I	GTGCAC	1 cut(s)	924
AlwI	GGATC	1 cut(s)	426
Aor51HI	AGCGCT	1 cut(s)	179
AoxI	GGCC	7 cut(s)	316, 424, 568, 679, 700, 744, 982
ApaLI	GTGCAC	1 cut(s)	924
ApeKI	GCWGC	2 cut(s)	686, 971
ApoI	RAATTY	1 cut(s)	358
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	2 cut(s)	46, 316
AsuC2I	CCSGG	1 cut(s)	978
AsuHPI	GGTGA	1 cut(s)	947
AvaII	GGWCC	1 cut(s)	46
BaeGI	GKGCMC	1 cut(s)	928
BalI	TGGCCA	1 cut(s)	681
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	1 cut(s)	928
BbvI	GCAGC	2 cut(s)	698, 958
BccI	CCATC	3 cut(s)	224, 644, 881
BceAI	ACGGC	2 cut(s)	657, 731
BcnI	CCSGG	1 cut(s)	978
BcoDI	GTCTC	1 cut(s)	95
BfaI	CTAG	2 cut(s)	783, 845
BfmI	CTRYAG	1 cut(s)	31
BfoI	RGCGCY	1 cut(s)	181
BfrI	CTTAAG	1 cut(s)	740
BglI	GCCNNNNNGGC	1 cut(s)	990
BisI	GCNGC	3 cut(s)	60, 687, 972
BlsI	GCNGC	3 cut(s)	61, 688, 973
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	1 cut(s)	978
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	2 cut(s)	46, 316
BmrFI	CCNGG	1 cut(s)	978
BmsI	GCATC	3 cut(s)	36, 88, 571
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	978
BsaJI	CCNNGG	5 cut(s)	621, 666, 747, 850, 999
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 742
Bse118I	RCCGGY	2 cut(s)	370, 698
Bse1I	ACTGG	4 cut(s)	389, 496, 799, 905
Bse3DI	GCAATG	3 cut(s)	131, 667, 993
BseDI	CCNNGG	5 cut(s)	621, 666, 747, 850, 999
BseLI	CCNNNNNNNGG	2 cut(s)	55, 742
BseMI	GCAATG	3 cut(s)	131, 667, 993
BseMII	CTCAG	2 cut(s)	465, 504
BseNI	ACTGG	4 cut(s)	389, 496, 799, 905
BseRI	GAGGAG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	928
BseXI	GCAGC	2 cut(s)	698, 958
BsgI	GTGCAG	1 cut(s)	957
BshFI	GGCC	7 cut(s)	318, 426, 570, 681, 702, 746, 984
BsiHKAI	GWGCWC	1 cut(s)	928
BsiSI	CCGG	3 cut(s)	371, 699, 977
BslFI	GGGAC	1 cut(s)	904
BslI	CCNNNNNNNGG	2 cut(s)	55, 742
BsmAI	GTCTC	1 cut(s)	95
BsmFI	GGGAC	1 cut(s)	904
BsmI	GAATGC	2 cut(s)	446, 960
BsnI	GGCC	7 cut(s)	318, 426, 570, 681, 702, 746, 984
Bsp1286I	GDGCHC	1 cut(s)	928
Bsp143I	GATC	1 cut(s)	418
Bsp19I	CCATGG	2 cut(s)	850, 999
BspACI	CCGC	2 cut(s)	59, 671
BspANI	GGCC	7 cut(s)	318, 426, 570, 681, 702, 746, 984
BspCNI	CTCAG	2 cut(s)	464, 505
BspMAI	CTGCAG	1 cut(s)	35
BspPI	GGATC	1 cut(s)	426
BspTI	CTTAAG	1 cut(s)	740
BsrDI	GCAATG	3 cut(s)	131, 667, 993
BsrFI	RCCGGY	2 cut(s)	370, 698
BsrI	ACTGG	4 cut(s)	389, 496, 799, 905
BssAI	RCCGGY	2 cut(s)	370, 698
BssECI	CCNNGG	5 cut(s)	621, 666, 747, 850, 999
BssMI	GATC	1 cut(s)	418
BssNAI	GTATAC	1 cut(s)	151
BssT1I	CCWWGG	3 cut(s)	666, 850, 999
Bst1107I	GTATAC	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	367, 533
Bst6I	CTCTTC	1 cut(s)	279
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	3 cut(s)	372, 679, 717
BstDEI	CTNAG	3 cut(s)	451, 513, 894
BstDSI	CCRYGG	3 cut(s)	747, 850, 999
BstENI	CCTNNNNNAGG	1 cut(s)	740
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	418
BstMWI	GCNNNNNNNGC	6 cut(s)	452, 461, 683, 779, 990, 1004
BstNSI	RCATGY	2 cut(s)	660, 834
BstSCI	CCNGG	1 cut(s)	976
BstSFI	CTRYAG	1 cut(s)	31
BstSLI	GKGCMC	1 cut(s)	928
BstV1I	GCAGC	2 cut(s)	698, 958
BstV2I	GAAGAC	1 cut(s)	60
BstZ17I	GTATAC	1 cut(s)	151
BsuRI	GGCC	7 cut(s)	318, 426, 570, 681, 702, 746, 984
BtgI	CCRYGG	3 cut(s)	747, 850, 999
BtsI	GCAGTG	3 cut(s)	291, 462, 1017
BtsIMutI	CAGTG	3 cut(s)	291, 462, 1017
Cac8I	GCNNGC	3 cut(s)	372, 679, 717
CfoI	GCGC	1 cut(s)	180
Cfr10I	RCCGGY	2 cut(s)	370, 698
Cfr13I	GGNCC	2 cut(s)	46, 316
CseI	GACGC	1 cut(s)	788
Csp6I	GTAC	3 cut(s)	118, 654, 898
CviAII	CATG	8 cut(s)	52, 608, 657, 683, 831, 851, 918, 1000
CviQI	GTAC	3 cut(s)	118, 654, 898
DdeI	CTNAG	3 cut(s)	451, 513, 894
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
DrdI	GACNNNNNNGTC	1 cut(s)	536
DseDI	GACNNNNNNGTC	1 cut(s)	536
EaeI	YGGCCR	2 cut(s)	679, 700
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
EciI	GGCGGA	1 cut(s)	686
Eco130I	CCWWGG	3 cut(s)	666, 850, 999
Eco147I	AGGCCT	1 cut(s)	984
Eco47I	GGWCC	1 cut(s)	46
Eco47III	AGCGCT	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	740
EcoT14I	CCWWGG	3 cut(s)	666, 850, 999
EcoT22I	ATGCAT	2 cut(s)	29, 103
ErhI	CCWWGG	3 cut(s)	666, 850, 999
FaeI	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
FaqI	GGGAC	1 cut(s)	904
FatI	CATG	8 cut(s)	51, 607, 656, 682, 830, 850, 917, 999
FblI	GTMKAC	2 cut(s)	150, 549
Fnu4HI	GCNGC	3 cut(s)	60, 687, 972
Fsp4HI	GCNGC	3 cut(s)	60, 687, 972
FspBI	CTAG	2 cut(s)	783, 845
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	3 cut(s)	60, 687, 972
GsuI	CTGGAG	1 cut(s)	406
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	7 cut(s)	318, 426, 570, 681, 702, 746, 984
HapII	CCGG	3 cut(s)	371, 699, 977
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HinfI	GANTC	5 cut(s)	215, 253, 259, 309, 474
HpaII	CCGG	3 cut(s)	371, 699, 977
HphI	GGTGA	1 cut(s)	947
Hpy166II	GTNNAC	7 cut(s)	9, 151, 291, 497, 529, 550, 926
Hpy188I	TCNGA	3 cut(s)	73, 258, 514
Hpy188III	TCNNGA	2 cut(s)	184, 300
Hpy8I	GTNNAC	7 cut(s)	9, 151, 291, 497, 529, 550, 926
HpyAV	CCTTC	6 cut(s)	163, 388, 464, 548, 746, 935
HpyCH4III	ACNGT	2 cut(s)	367, 533
HpyF10VI	GCNNNNNNNGC	6 cut(s)	452, 461, 683, 779, 990, 1004
HpyF3I	CTNAG	3 cut(s)	451, 513, 894
Hsp92II	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
HspAI	GCGC	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	4 cut(s)	175, 398, 461, 841
Lsp1109I	GCAGC	2 cut(s)	698, 958
LweI	GCATC	3 cut(s)	36, 88, 571
MaeI	CTAG	2 cut(s)	783, 845
MaeIII	GTNAC	2 cut(s)	403, 856
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	5 cut(s)	60, 210, 296, 719, 950
MhlI	GDGCHC	1 cut(s)	928
MlsI	TGGCCA	1 cut(s)	681
MluCI	AATT	4 cut(s)	248, 263, 358, 628
MluNI	TGGCCA	1 cut(s)	681
MlyI	GAGTC	1 cut(s)	262
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	8 cut(s)	59, 108, 166, 196, 307, 616, 974, 1018
Mox20I	TGGCCA	1 cut(s)	681
Mph1103I	ATGCAT	2 cut(s)	29, 103
MroNI	GCCGGC	1 cut(s)	370
MscI	TGGCCA	1 cut(s)	681
MseI	TTAA	2 cut(s)	615, 741
MslI	CAYNNNNRTG	2 cut(s)	708, 998
Msp20I	TGGCCA	1 cut(s)	681
MspA1I	CMGCKG	1 cut(s)	863
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	3 cut(s)	371, 699, 977
MspR9I	CCNGG	1 cut(s)	978
Mva1269I	GAATGC	2 cut(s)	446, 960
MwoI	GCNNNNNNNGC	6 cut(s)	452, 461, 683, 779, 990, 1004
NaeI	GCCGGC	1 cut(s)	372
NciI	CCSGG	1 cut(s)	978
NcoI	CCATGG	2 cut(s)	850, 999
NdeII	GATC	1 cut(s)	418
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	8 cut(s)	55, 611, 660, 686, 834, 854, 921, 1003
NsiI	ATGCAT	2 cut(s)	29, 103
NspI	RCATGY	2 cut(s)	660, 834
PceI	AGGCCT	1 cut(s)	984
PciI	ACATGT	1 cut(s)	830
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	2 cut(s)	446, 960
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	4 cut(s)	215, 259, 309, 474
PkrI	GCNGC	3 cut(s)	61, 688, 973
PleI	GAGTC	1 cut(s)	261
PpsI	GAGTC	1 cut(s)	261
PscI	ACATGT	1 cut(s)	830
PshBI	ATTAAT	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	46, 316
PstI	CTGCAG	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	863
RsaI	GTAC	3 cut(s)	119, 655, 899
RsaNI	GTAC	3 cut(s)	118, 654, 898
RseI	CAYNNNNRTG	2 cut(s)	708, 998
SaqAI	TTAA	2 cut(s)	615, 741
SatI	GCNGC	3 cut(s)	60, 687, 972
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	2 cut(s)	46, 316
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	1 cut(s)	978
SduI	GDGCHC	1 cut(s)	928
SfaNI	GCATC	3 cut(s)	36, 88, 571
SfcI	CTRYAG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	46
SmiMI	CAYNNNNRTG	2 cut(s)	708, 998
SmlI	CTYRAG	2 cut(s)	298, 740
SmoI	CTYRAG	2 cut(s)	298, 740
Sse9I	AATT	4 cut(s)	248, 263, 358, 628
SseBI	AGGCCT	1 cut(s)	984
SsiI	CCGC	2 cut(s)	59, 671
SspMI	CTAG	2 cut(s)	783, 845
StuI	AGGCCT	1 cut(s)	984
StyD4I	CCNGG	1 cut(s)	976
StyI	CCWWGG	3 cut(s)	666, 850, 999
TaaI	ACNGT	2 cut(s)	367, 533
TasI	AATT	4 cut(s)	248, 263, 358, 628
TatI	WGTACW	1 cut(s)	897
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	4 cut(s)	215, 259, 309, 474
Tru1I	TTAA	2 cut(s)	615, 741
Tru9I	TTAA	2 cut(s)	615, 741
TscAI	CASTG	3 cut(s)	298, 462, 1024
TseI	GCWGC	2 cut(s)	686, 971
TspDTI	ATGAA	2 cut(s)	297, 369
TspGWI	ACGGA	1 cut(s)	854
TspRI	CASTG	3 cut(s)	298, 462, 1024
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	1 cut(s)	924
VpaK11BI	GGWCC	1 cut(s)	46
VspI	ATTAAT	1 cut(s)	615
XagI	CCTNNNNNAGG	1 cut(s)	740
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	2 cut(s)	660, 834
XmiI	GTMKAC	2 cut(s)	150, 549
XspI	CTAG	2 cut(s)	783, 845
ZrmI	AGTACT	1 cut(s)	899
Zsp2I	ATGCAT	2 cut(s)	29, 103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.