Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

51403622 .. 51404182

Gene Structure 561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG364500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGAAGGAATTACTCAACTTACAACTGGTAAATTGATTTCTTTGTCTGAGCAAGAGTTGGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGTGGCTTGATGGACGATGCCTTTCAGTTCATCAATCAAAATCATGGACTCAGTACCGAAGCTAATTATCCATACACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAGACCATGCAGCGTCAATCACAGGCCACGAAGATGTGCCTGCAAATAGTGAAAGTGCACTTCTTAAGGCCGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCCGATTTCCAGTTCTACTCAAGTGGTGTTTTCACAGGAACCTGTGGAACTAGCCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGCTAGCAATGATGGGACTAAGTACTGGCTGGTGAAGAACTCATGGGGTGAACAATGGGGTGAAGAAGGTTACATAAGGATGCAAAGAGATGTTTCTGCACCAGAAGGTCTCTGTGGCATTGCCATGGAAGCTTCCTATCCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

186

Amino Acids

19.63

Weight (kDa)

4.16

Isoelectric Point (pI)

13.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 185	3.8e-65	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
AccB7I	CCANNNNNTGG	1 cut(s)	176
AciI	CCGC	1 cut(s)	396
AclWI	GGATC	2 cut(s)	318, 331
AfaI	GTAC	3 cut(s)	154, 190, 434
AfiI	CCNNNNNNNGG	1 cut(s)	176
AflII	CTTAAG	1 cut(s)	275
AluBI	AGCT	2 cut(s)	161, 542
AluI	AGCT	2 cut(s)	161, 542
Alw21I	GWGCWC	1 cut(s)	271
Alw26I	GTCTC	1 cut(s)	524
Alw44I	GTGCAC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	318, 331
AoxI	GGCC	2 cut(s)	235, 279
ApaLI	GTGCAC	1 cut(s)	267
ApeKI	GCWGC	1 cut(s)	221
AsuHPI	GGTGA	4 cut(s)	92, 454, 470, 482
AsuNHI	GCTAGC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	3 cut(s)	103, 179, 416
BceAI	ACGGC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	4 cut(s)	318, 375, 380, 414
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	325, 364
BmsI	GCATC	3 cut(s)	106, 304, 480
BmtI	GCTAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	328
BsaI	GGTCTC	1 cut(s)	524
BsaJI	CCNNGG	2 cut(s)	385, 534
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse1I	ACTGG	4 cut(s)	31, 181, 334, 440
Bse3DI	GCAATG	3 cut(s)	202, 424, 528
BseDI	CCNNGG	2 cut(s)	385, 534
BseGI	GGATG	1 cut(s)	495
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	3 cut(s)	202, 424, 528
BseMII	CTCAG	2 cut(s)	39, 163
BseNI	ACTGG	4 cut(s)	31, 181, 334, 440
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	233
BsgI	GTGCAG	1 cut(s)	492
BshFI	GGCC	2 cut(s)	237, 281
BsiHKAI	GWGCWC	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	1 cut(s)	439
BsnI	GGCC	2 cut(s)	237, 281
Bso31I	GGTCTC	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	85, 323
Bsp19I	CCATGG	2 cut(s)	385, 534
BspACI	CCGC	1 cut(s)	396
BspANI	GGCC	2 cut(s)	237, 281
BspCNI	CTCAG	2 cut(s)	40, 162
BspLI	GGNNCC	2 cut(s)	325, 364
BspOI	GCTAGC	1 cut(s)	417
BspPI	GGATC	2 cut(s)	318, 331
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	524
BsrDI	GCAATG	3 cut(s)	202, 424, 528
BsrI	ACTGG	4 cut(s)	31, 181, 334, 440
BssECI	CCNNGG	2 cut(s)	385, 534
BssMI	GATC	2 cut(s)	85, 323
BssT1I	CCWWGG	2 cut(s)	385, 534
Bst4CI	ACNGT	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	275
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	2 cut(s)	252, 415
BstDEI	CTNAG	3 cut(s)	48, 149, 429
BstDSI	CCRYGG	2 cut(s)	385, 534
BstF5I	GGATG	1 cut(s)	495
BstKTI	GATC	2 cut(s)	88, 326
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	85, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 314, 539
BstNSI	RCATGY	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
BsuRI	GGCC	2 cut(s)	237, 281
BtgI	CCRYGG	2 cut(s)	385, 534
BtsCI	GGATG	1 cut(s)	495
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	174, 552
Cac8I	GCNNGC	2 cut(s)	252, 415
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	3 cut(s)	153, 189, 433
CviAII	CATG	6 cut(s)	143, 192, 218, 386, 453, 535
CviJI	RGCY	8 cut(s)	93, 105, 161, 237, 281, 378, 439, 542
CviKI_1	RGCY	8 cut(s)	93, 105, 161, 237, 281, 378, 439, 542
CviQI	GTAC	3 cut(s)	153, 189, 433
DdeI	CTNAG	3 cut(s)	48, 149, 429
DpnI	GATC	2 cut(s)	87, 325
DpnII	GATC	2 cut(s)	85, 323
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
Eco130I	CCWWGG	2 cut(s)	385, 534
Eco31I	GGTCTC	1 cut(s)	524
EcoT14I	CCWWGG	2 cut(s)	385, 534
ErhI	CCWWGG	2 cut(s)	385, 534
FaeI	CATG	6 cut(s)	146, 195, 221, 389, 456, 538
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	6 cut(s)	142, 191, 217, 385, 452, 534
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	4 cut(s)	318, 375, 380, 414
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	237, 281
HgaI	GACGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	146, 195, 221, 389, 456, 538
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	540
HinfI	GANTC	1 cut(s)	147
HphI	GGTGA	4 cut(s)	92, 454, 470, 482
Hpy166II	GTNNAC	3 cut(s)	64, 269, 461
Hpy188I	TCNGA	2 cut(s)	49, 328
Hpy8I	GTNNAC	3 cut(s)	64, 269, 461
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	3 cut(s)	199, 470, 509
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	7 cut(s)	195, 221, 254, 269, 493, 509, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 314, 539
HpyF3I	CTNAG	3 cut(s)	48, 149, 429
Hsp92II	CATG	6 cut(s)	146, 195, 221, 389, 456, 538
Kzo9I	GATC	2 cut(s)	85, 323
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	3 cut(s)	106, 304, 480
MaeI	CTAG	4 cut(s)	318, 375, 380, 414
MaeIII	GTNAC	2 cut(s)	391, 479
MalI	GATC	2 cut(s)	87, 325
MboI	GATC	2 cut(s)	85, 323
MboII	GAAGA	4 cut(s)	95, 254, 457, 485
MflI	RGATCY	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	3 cut(s)	9, 32, 163
MlyI	GAGTC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	91
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	3 cut(s)	243, 488, 533
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	275
MwoI	GCNNNNNNNGC	3 cut(s)	218, 314, 539
NcoI	CCATGG	2 cut(s)	385, 534
NdeII	GATC	2 cut(s)	85, 323
NheI	GCTAGC	1 cut(s)	413
NlaIII	CATG	6 cut(s)	146, 195, 221, 389, 456, 538
NlaIV	GGNNCC	2 cut(s)	325, 364
NspI	RCATGY	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	141
PpsI	GAGTC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	325, 364
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	3 cut(s)	154, 190, 434
RsaNI	GTAC	3 cut(s)	153, 189, 433
RseI	CAYNNNNRTG	3 cut(s)	243, 488, 533
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	85, 323
ScaI	AGTACT	1 cut(s)	434
SchI	GAGTC	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	6 cut(s)	163, 298, 368, 481, 520, 544
SfaNI	GCATC	3 cut(s)	106, 304, 480
SmiMI	CAYNNNNRTG	3 cut(s)	243, 488, 533
SmlI	CTYRAG	2 cut(s)	275, 343
SmoI	CTYRAG	2 cut(s)	275, 343
Sse9I	AATT	3 cut(s)	9, 32, 163
SsiI	CCGC	1 cut(s)	396
SspMI	CTAG	4 cut(s)	318, 375, 380, 414
StyI	CCWWGG	2 cut(s)	385, 534
TaaI	ACNGT	1 cut(s)	68
TasI	AATT	3 cut(s)	9, 32, 163
TatI	WGTACW	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	181, 559
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	1 cut(s)	118
TspRI	CASTG	2 cut(s)	181, 559
Van91I	CCANNNNNTGG	1 cut(s)	176
Vha464I	CTTAAG	1 cut(s)	275
VneI	GTGCAC	1 cut(s)	267
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	4 cut(s)	318, 375, 380, 414
ZrmI	AGTACT	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.