Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

46056760 .. 46057579

Gene Structure 820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019083

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGACTGGAGACAGAAAGGAGCTGTAACTCCCGTCAAGGACCAAGGCCATTGTGGGTCCTGTTGGGCTTTCTCAGCCGTGGCAGCCATGGAAGGAATTACTCAACTTACAATTGGTAAATTGATTTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGCCCAAGGCTGTTGGGGTGGCTTAATGGATGATGCCTTTCGGTTCATCTATGAAAACCATGGACTTAGCACCGAGGCTAATTATCCCTACACCGGTGTTGAGGGTACATGCAATGCCAAGAAGCAAGCAAACCATGCAGCCTCGATAACTGGCCACGAAGATGTGCCTGCAAACAGTGAAAGCGCACTTCTTAAGGCTGTTGCCAATCAACCTATTTCTGTTTATATTGATGCTAGTGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACCTGTGGAACGAGCCTAGACCATGGTGGTACCGCTGTTGGTTATGGCATCAGCGATGATGGGACTAAGTATTGGTTGGTTAAGAACTCATGGGGCGCAGAATGGGGAGAAGAAGGTTACATAAGAATGCAAAGAGACGTTGCTTCACAGGAAGATCTCTGTGGTATTGCTATGGAAGCCTCCTACCCCACTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

216

Amino Acids

22.96

Weight (kDa)

4.45

Isoelectric Point (pI)

17.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	1 - 214	1.4e-79	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
Acc65I	GGTACC	1 cut(s)	479
AccB1I	GGYRCC	1 cut(s)	479
AciI	CCGC	1 cut(s)	483
AclWI	GGATC	1 cut(s)	418
AcoI	YGGCCR	1 cut(s)	322
AfaI	GTAC	2 cut(s)	277, 481
AfiI	CCNNNNNNNGG	1 cut(s)	263
AflII	CTTAAG	1 cut(s)	362
AgeI	ACCGGT	1 cut(s)	263
AgsI	TTSAA	1 cut(s)	432
AluBI	AGCT	2 cut(s)	23, 145
AluI	AGCT	2 cut(s)	23, 145
Alw26I	GTCTC	2 cut(s)	4, 579
AlwI	GGATC	1 cut(s)	418
AoxI	GGCC	2 cut(s)	46, 322
ApeKI	GCWGC	2 cut(s)	83, 308
AsiGI	ACCGGT	1 cut(s)	263
Asp718I	GGTACC	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	356, 548
AspS9I	GGNCC	2 cut(s)	40, 57
AsuHPI	GGTGA	1 cut(s)	179
AvaII	GGWCC	2 cut(s)	40, 57
BaeI	ACNNNNGTAYC	2 cut(s)	471, 504
BalI	TGGCCA	1 cut(s)	324
BanI	GGYRCC	1 cut(s)	479
BbvI	GCAGC	2 cut(s)	95, 320
BccI	CCATC	1 cut(s)	503
BceAI	ACGGC	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	4, 579
BfaI	CTAG	3 cut(s)	146, 405, 467
BfrI	CTTAAG	1 cut(s)	362
BglII	AGATCT	1 cut(s)	604
BisI	GCNGC	2 cut(s)	84, 309
BlsI	GCNGC	2 cut(s)	85, 310
Bme18I	GGWCC	2 cut(s)	40, 57
BmgT120I	GGNCC	2 cut(s)	40, 57
BmiI	GGNNCC	3 cut(s)	58, 451, 481
BmsI	GCATC	3 cut(s)	193, 391, 507
BpmI	CTGGAG	1 cut(s)	28
BsaJI	CCNNGG	7 cut(s)	43, 78, 87, 175, 229, 243, 472
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	11, 325
Bse3DI	GCAATG	1 cut(s)	289
BseDI	CCNNGG	7 cut(s)	43, 78, 87, 175, 229, 243, 472
BseGI	GGATG	1 cut(s)	205
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseMI	GCAATG	1 cut(s)	289
BseMII	CTCAG	2 cut(s)	87, 126
BseNI	ACTGG	2 cut(s)	11, 325
BseXI	GCAGC	2 cut(s)	95, 320
BshFI	GGCC	2 cut(s)	48, 324
BshNI	GGYRCC	1 cut(s)	479
BshTI	ACCGGT	1 cut(s)	263
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	526
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmAI	GTCTC	2 cut(s)	4, 579
BsmBI	CGTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	526
BsmI	GAATGC	1 cut(s)	582
BsnI	GGCC	2 cut(s)	48, 324
Bsp143I	GATC	2 cut(s)	410, 604
Bsp19I	CCATGG	3 cut(s)	87, 229, 472
BspACI	CCGC	1 cut(s)	483
BspANI	GGCC	2 cut(s)	48, 324
BspCNI	CTCAG	2 cut(s)	86, 127
BspLI	GGNNCC	3 cut(s)	58, 451, 481
BspPI	GGATC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	289
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	11, 325
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	7 cut(s)	43, 78, 87, 175, 229, 243, 472
BssMI	GATC	2 cut(s)	410, 604
BssT1I	CCWWGG	5 cut(s)	43, 87, 175, 229, 472
Bst4CI	ACNGT	2 cut(s)	155, 347
BstAFI	CTTAAG	1 cut(s)	362
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	297, 339
BstDEI	CTNAG	4 cut(s)	73, 135, 236, 516
BstDSI	CCRYGG	4 cut(s)	78, 87, 229, 472
BstF5I	GGATG	1 cut(s)	205
BstHHI	GCGC	2 cut(s)	356, 548
BstKTI	GATC	2 cut(s)	413, 607
BstMAI	GTCTC	2 cut(s)	4, 579
BstMBI	GATC	2 cut(s)	410, 604
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 83, 305, 626
BstNSI	RCATGY	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	95, 320
BstX2I	RGATCY	2 cut(s)	410, 604
BstYI	RGATCY	2 cut(s)	410, 604
BsuRI	GGCC	2 cut(s)	48, 324
BtgI	CCRYGG	4 cut(s)	78, 87, 229, 472
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	205
BtsI	GCAGTG	1 cut(s)	639
BtsIMutI	CAGTG	2 cut(s)	352, 639
Cac8I	GCNNGC	2 cut(s)	297, 339
CfoI	GCGC	2 cut(s)	356, 548
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	40, 57
Csp6I	GTAC	2 cut(s)	276, 480
CspAI	ACCGGT	1 cut(s)	263
CviAII	CATG	7 cut(s)	88, 230, 279, 305, 473, 540, 645
CviQI	GTAC	2 cut(s)	276, 480
DdeI	CTNAG	4 cut(s)	73, 135, 236, 516
DpnI	GATC	2 cut(s)	412, 606
DpnII	GATC	2 cut(s)	410, 604
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	322
Eco130I	CCWWGG	5 cut(s)	43, 87, 175, 229, 472
Eco47I	GGWCC	2 cut(s)	40, 57
EcoO109I	RGGNCCY	1 cut(s)	57
EcoT14I	CCWWGG	5 cut(s)	43, 87, 175, 229, 472
ErhI	CCWWGG	5 cut(s)	43, 87, 175, 229, 472
Esp3I	CGTCTC	1 cut(s)	579
FaeI	CATG	7 cut(s)	91, 233, 282, 308, 476, 543, 648
FaqI	GGGAC	1 cut(s)	526
FatI	CATG	7 cut(s)	87, 229, 278, 304, 472, 539, 644
Fnu4HI	GCNGC	2 cut(s)	84, 309
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	2 cut(s)	84, 309
FspBI	CTAG	3 cut(s)	146, 405, 467
GlaI	GCGC	2 cut(s)	355, 547
GluI	GCNGC	2 cut(s)	84, 309
GsuI	CTGGAG	1 cut(s)	28
HaeIII	GGCC	2 cut(s)	48, 324
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	2 cut(s)	356, 548
Hin1II	CATG	7 cut(s)	91, 233, 282, 308, 476, 543, 648
Hin6I	GCGC	2 cut(s)	354, 546
HinP1I	GCGC	2 cut(s)	354, 546
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	1 cut(s)	179
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	136, 415
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	86, 557
HpyCH4III	ACNGT	2 cut(s)	155, 347
HpyCH4IV	ACGT	1 cut(s)	588
HpyCH4V	TGCA	5 cut(s)	282, 308, 341, 580, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 83, 305, 626
HpyF3I	CTNAG	4 cut(s)	73, 135, 236, 516
HpySE526I	ACGT	1 cut(s)	588
Hsp92II	CATG	7 cut(s)	91, 233, 282, 308, 476, 543, 648
HspAI	GCGC	2 cut(s)	354, 546
KpnI	GGTACC	1 cut(s)	483
Kzo9I	GATC	2 cut(s)	410, 604
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	7 cut(s)	73, 277, 306, 351, 432, 466, 584
Lsp1109I	GCAGC	2 cut(s)	95, 320
LweI	GCATC	3 cut(s)	193, 391, 507
MaeI	CTAG	3 cut(s)	146, 405, 467
MaeII	ACGT	1 cut(s)	588
MaeIII	GTNAC	2 cut(s)	25, 566
MalI	GATC	2 cut(s)	412, 606
MboI	GATC	2 cut(s)	410, 604
MboII	GAAGA	3 cut(s)	341, 572, 614
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	2 cut(s)	410, 604
MlsI	TGGCCA	1 cut(s)	324
MluCI	AATT	5 cut(s)	96, 111, 119, 250, 422
MluNI	TGGCCA	1 cut(s)	324
MnlI	CCTC	4 cut(s)	238, 265, 322, 640
Mox20I	TGGCCA	1 cut(s)	324
MscI	TGGCCA	1 cut(s)	324
MseI	TTAA	3 cut(s)	194, 363, 531
MslI	CAYNNNNRTG	2 cut(s)	330, 575
Msp20I	TGGCCA	1 cut(s)	324
MspA1I	CMGCKG	1 cut(s)	485
MspCI	CTTAAG	1 cut(s)	362
MspI	CCGG	1 cut(s)	264
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	582
MwoI	GCNNNNNNNGC	4 cut(s)	74, 83, 305, 626
NcoI	CCATGG	3 cut(s)	87, 229, 472
NdeII	GATC	2 cut(s)	410, 604
NlaIII	CATG	7 cut(s)	91, 233, 282, 308, 476, 543, 648
NlaIV	GGNNCC	3 cut(s)	58, 451, 481
NspI	RCATGY	1 cut(s)	282
PctI	GAATGC	1 cut(s)	582
PinAI	ACCGGT	1 cut(s)	263
PkrI	GCNGC	2 cut(s)	85, 310
PpuMI	RGGWCCY	1 cut(s)	57
Psp5II	RGGWCCY	1 cut(s)	57
PspN4I	GGNNCC	3 cut(s)	58, 451, 481
PspPI	GGNCC	2 cut(s)	40, 57
PspPPI	RGGWCCY	1 cut(s)	57
PsuI	RGATCY	2 cut(s)	410, 604
RsaI	GTAC	2 cut(s)	277, 481
RsaNI	GTAC	2 cut(s)	276, 480
RseI	CAYNNNNRTG	2 cut(s)	330, 575
SaqAI	TTAA	3 cut(s)	194, 363, 531
SatI	GCNGC	2 cut(s)	84, 309
Sau3AI	GATC	2 cut(s)	410, 604
Sau96I	GGNCC	2 cut(s)	40, 57
SetI	ASST	6 cut(s)	25, 147, 385, 455, 568, 591
SfaNI	GCATC	3 cut(s)	193, 391, 507
SgrAI	CRCCGGYG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	40, 57
SmiMI	CAYNNNNRTG	2 cut(s)	330, 575
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	5 cut(s)	96, 111, 119, 250, 422
SsiI	CCGC	1 cut(s)	483
SspMI	CTAG	3 cut(s)	146, 405, 467
StyI	CCWWGG	5 cut(s)	43, 87, 175, 229, 472
TaaI	ACNGT	2 cut(s)	155, 347
TaiI	ACGT	1 cut(s)	591
TaqI	TCGA	1 cut(s)	314
TasI	AATT	5 cut(s)	96, 111, 119, 250, 422
Tru1I	TTAA	3 cut(s)	194, 363, 531
Tru9I	TTAA	3 cut(s)	194, 363, 531
TscAI	CASTG	2 cut(s)	352, 646
TseI	GCWGC	2 cut(s)	83, 308
TspDTI	ATGAA	2 cut(s)	205, 237
TspRI	CASTG	2 cut(s)	352, 646
Vha464I	CTTAAG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	40, 57
XceI	RCATGY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	1 cut(s)	50
XspI	CTAG	3 cut(s)	146, 405, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.