Rorug02G0377900

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
48317437 .. 48317871
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0377900.1

Sequence Viewer

Length: 435 bp
ATGCCATTAATAAGTCACTATCAATTTTTGGTAGGACGAGGTAGGCTTTGTCCCGATCTGTGCACCTTGAGTGTCATGTCTAGTCTAGGAAGGCGGCGAGTTCCTTGCATTGTCAAATGGTCGCAGCCTCCTAGTGGCAGGATGAAATTCAGTGTCACCGAATTTATTTTTCGGTGGCAACATAGTGGGAAAGTTGATATTATTGTATTATGGCTCCGCGTGAGCGTTATCTTTCCGGTATGTCGCCAAAATTGTAAAGCAAATGGAGTAGCCAATGATGCACTCTTTGCTAAGTGGTGCGTGTTAGAATACACAGGATTAGTAGGGAATCCTGATATTATTTCGGGATTTTCTCTCAAAGCTTATTGTCATACGGGGTTTAGGCACCATGTCCCCCCCTTGTATTCTATGATTTCATCAATGGTTATGGCTTAA

Protein Analysis

144

Amino Acids

16.28

Weight (kDa)

9.67

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 384
AccII CGCG 1 cut(s) 219
AciI CCGC 2 cut(s) 94, 217
AcsI RAATTY 2 cut(s) 146, 161
AfiI CCNNNNNNNGG 1 cut(s) 134
AluBI AGCT 1 cut(s) 362
AluI AGCT 1 cut(s) 362
Alw21I GWGCWC 1 cut(s) 65
Alw44I GTGCAC 1 cut(s) 61
ApaLI GTGCAC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 2 cut(s) 146, 161
AseI ATTAAT 1 cut(s) 8
AsuHPI GGTGA 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 65
BanI GGYRCC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 136
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BfaI CTAG 3 cut(s) 81, 86, 132
BisI GCNGC 2 cut(s) 95, 125
BlsI GCNGC 2 cut(s) 96, 126
BmiI GGNNCC 2 cut(s) 215, 386
BmsI GCATC 1 cut(s) 268
BpuEI CTTGAG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 235
Bsc4I CCNNNNNNNGG 1 cut(s) 134
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 134
BseSI GKGCMC 1 cut(s) 65
BseXI GCAGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 219
BshNI GGYRCC 1 cut(s) 384
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 36, 377
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 36, 377
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 55
BspACI CCGC 2 cut(s) 94, 217
BspFNI CGCG 1 cut(s) 219
BspLI GGNNCC 2 cut(s) 215, 386
BspT107I GGYRCC 1 cut(s) 384
BssMI GATC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 287
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 147
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 278, 287
BstSLI GKGCMC 1 cut(s) 65
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 157
CviAII CATG 2 cut(s) 76, 389
CviJI RGCY 6 cut(s) 46, 127, 214, 272, 362, 431
CviKI_1 RGCY 6 cut(s) 46, 127, 214, 272, 362, 431
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
FaeI CATG 2 cut(s) 79, 392
FaiI YATR 8 cut(s) 77, 183, 211, 241, 372, 390, 410, 428
FaqI GGGAC 2 cut(s) 36, 377
FatI CATG 2 cut(s) 75, 388
Fnu4HI GCNGC 2 cut(s) 95, 125
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 2 cut(s) 95, 125
FspBI CTAG 3 cut(s) 81, 86, 132
GluI GCNGC 2 cut(s) 95, 125
HapII CCGG 1 cut(s) 236
Hin1II CATG 2 cut(s) 79, 392
HindIII AAGCTT 1 cut(s) 360
HinfI GANTC 1 cut(s) 328
HpaII CCGG 1 cut(s) 236
HphI GGTGA 1 cut(s) 148
Hpy166II GTNNAC 1 cut(s) 63
Hpy188III TCNNGA 3 cut(s) 53, 332, 345
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 1 cut(s) 84
HpyCH4V TGCA 3 cut(s) 63, 108, 281
HpyF10VI GCNNNNNNNGC 2 cut(s) 278, 287
HpyF3I CTNAG 1 cut(s) 291
Hsp92II CATG 2 cut(s) 79, 392
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 124, 249, 300, 345
Lsp1109I GCAGC 1 cut(s) 136
LweI GCATC 1 cut(s) 268
MaeI CTAG 3 cut(s) 81, 86, 132
MaeIII GTNAC 2 cut(s) 14, 154
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 4 cut(s) 23, 146, 161, 250
MnlI CCTC 2 cut(s) 32, 138
MseI TTAA 2 cut(s) 8, 433
MspI CCGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 278, 287
NdeII GATC 1 cut(s) 55
NlaIII CATG 2 cut(s) 79, 392
NlaIV GGNNCC 2 cut(s) 215, 386
NmuCI GTSAC 2 cut(s) 14, 154
PfeI GAWTC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 96, 126
PshBI ATTAAT 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 215, 386
SaqAI TTAA 2 cut(s) 8, 433
SatI GCNGC 2 cut(s) 95, 125
Sau3AI GATC 1 cut(s) 55
SduI GDGCHC 1 cut(s) 65
SetI ASST 3 cut(s) 43, 68, 364
SfaNI GCATC 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 4 cut(s) 23, 146, 161, 250
SsiI CCGC 2 cut(s) 94, 217
SspMI CTAG 3 cut(s) 81, 86, 132
TasI AATT 4 cut(s) 23, 146, 161, 250
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 2 cut(s) 8, 433
Tru9I TTAA 2 cut(s) 8, 433
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 2 cut(s) 14, 154
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 2 cut(s) 14, 154
TspDTI ATGAA 2 cut(s) 158, 405
TspRI CASTG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 61
VspI ATTAAT 1 cut(s) 8
XapI RAATTY 2 cut(s) 146, 161
XspI CTAG 3 cut(s) 81, 86, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.