Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000847.1

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

165670 .. 167048

Gene Structure 1379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000847.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atgccatgcgcagttttagtacctggtgtatgtgacactgatgagaagcagaagcgcttcaagatattcaaggaaaatgtagcatttatagaatcttgcaatgacgaagcaaacaaaccttacaaactaagtgtgaatggatttgcagaccttacaaatgaagagttcacagcctcaagaaatcgatttaaggctcatgaatgctccacaaagaccacttctttcaaatatgaaaatgctactgtgccagcaacaatggactggagacggaaaggagctgttaccccaatcaaggaccaaggccaatgtggttgctgttgggcgttctcagcagtggcagccatggaaggaattactcaactcacaacttgtaaattgatttccttgtccgagcaagagctggttgactgtgatgttaatggtgaagaccaaggctgtgacggtggcctcatggatgatgcctttcagttcatcaatcaaaaccacggactaagtaccgaggccaattatccctacacaggtgttgatggaacatgcggaacgagcctggggcatggtgttaccgctgttggttatggtgtcagcgatgatgggactaagtattggctggtgaagaactcatggggagcagaatggggtgaacaagggtacataagaatgcaaagagatgttgatgcaccggaaggcctctgtggtattgctatggaagcctcttatcccacgctttttcgggagagcctcacaaaggcgttagcctcaaggcttaaggcgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

257

Amino Acids

28.11

Weight (kDa)

4.87

Isoelectric Point (pI)

19.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	10
AciI	CCGC	2 cut(s)	537, 564
AfaI	GTAC	3 cut(s)	21, 496, 650
AfeI	AGCGCT	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	292, 518, 745
AflII	CTTAAG	1 cut(s)	764
AgsI	TTSAA	3 cut(s)	61, 70, 226
AjnI	CCWGG	2 cut(s)	22, 546
AluBI	AGCT	2 cut(s)	278, 400
AluI	AGCT	2 cut(s)	278, 400
Alw26I	GTCTC	1 cut(s)	259
Aor51HI	AGCGCT	1 cut(s)	56
AoxI	GGCC	4 cut(s)	301, 445, 501, 685
ApeKI	GCWGC	1 cut(s)	338
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	11, 57
AspS9I	GGNCC	1 cut(s)	295
AsuHPI	GGTGA	3 cut(s)	434, 622, 650
AvaII	GGWCC	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	521, 584
BciT130I	CCWGG	2 cut(s)	24, 548
BcoDI	GTCTC	1 cut(s)	259
BfoI	RGCGCY	1 cut(s)	58
BfrI	CTTAAG	1 cut(s)	764
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	2 cut(s)	24, 548
Bme18I	GGWCC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	24, 548
BmsI	GCATC	2 cut(s)	448, 664
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	283
BpuEI	CTTGAG	2 cut(s)	160, 742
Bsa29I	ATCGAT	1 cut(s)	184
BsaJI	CCNNGG	6 cut(s)	298, 342, 430, 484, 498, 547
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	3 cut(s)	292, 518, 745
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	24, 548
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	6 cut(s)	298, 342, 430, 484, 498, 547
BseGI	GGATG	1 cut(s)	460
BseLI	CCNNNNNNNGG	3 cut(s)	292, 518, 745
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	342
BseNI	ACTGG	1 cut(s)	266
BseXI	GCAGC	1 cut(s)	350
BshFI	GGCC	4 cut(s)	303, 447, 503, 687
BshVI	ATCGAT	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	3 cut(s)	292, 518, 745
BsmAI	GTCTC	1 cut(s)	259
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	607
BsmI	GAATGC	2 cut(s)	206, 663
BsnI	GGCC	4 cut(s)	303, 447, 503, 687
Bsp19I	CCATGG	1 cut(s)	342
BspACI	CCGC	2 cut(s)	537, 564
BspANI	GGCC	4 cut(s)	303, 447, 503, 687
BspCNI	CTCAG	1 cut(s)	341
BspDI	ATCGAT	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	196
BspTI	CTTAAG	1 cut(s)	764
BsrDI	GCAATG	1 cut(s)	106
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	6 cut(s)	298, 342, 430, 484, 498, 547
BssT1I	CCWWGG	3 cut(s)	298, 342, 430
Bst2UI	CCWGG	2 cut(s)	24, 548
Bst4CI	ACNGT	3 cut(s)	244, 410, 443
Bst6I	CTCTTC	1 cut(s)	156
BstAFI	CTTAAG	1 cut(s)	764
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	4 cut(s)	128, 328, 491, 597
BstDSI	CCRYGG	2 cut(s)	342, 484
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	1 cut(s)	460
BstH2I	RGCGCY	1 cut(s)	58
BstHHI	GCGC	2 cut(s)	11, 57
BstMAI	GTCTC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	4 cut(s)	329, 338, 543, 707
BstNI	CCWGG	2 cut(s)	24, 548
BstNSI	RCATGY	1 cut(s)	537
BstSCI	CCNGG	2 cut(s)	22, 546
BstV1I	GCAGC	1 cut(s)	350
BstV2I	GAAGAC	1 cut(s)	432
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	4 cut(s)	303, 447, 503, 687
BsuTUI	ATCGAT	1 cut(s)	184
BtgI	CCRYGG	2 cut(s)	342, 484
BtgZI	GCGATG	1 cut(s)	600
BtsCI	GGATG	1 cut(s)	460
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	2 cut(s)	36, 339
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	2 cut(s)	11, 57
Cfr13I	GGNCC	1 cut(s)	295
ClaI	ATCGAT	1 cut(s)	184
CsiI	ACCWGGT	1 cut(s)	22
Csp6I	GTAC	3 cut(s)	20, 495, 649
CviAII	CATG	7 cut(s)	6, 197, 343, 451, 534, 554, 621
CviQI	GTAC	3 cut(s)	20, 495, 649
DdeI	CTNAG	4 cut(s)	128, 328, 491, 597
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco130I	CCWWGG	3 cut(s)	298, 342, 430
Eco147I	AGGCCT	1 cut(s)	687
Eco47I	GGWCC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	56
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	22, 546
EcoT14I	CCWWGG	3 cut(s)	298, 342, 430
ErhI	CCWWGG	3 cut(s)	298, 342, 430
Esp3I	CGTCTC	1 cut(s)	259
FaeI	CATG	7 cut(s)	9, 200, 346, 454, 537, 557, 624
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	7 cut(s)	5, 196, 342, 450, 533, 553, 620
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	467
Fsp4HI	GCNGC	1 cut(s)	339
FspI	TGCGCA	1 cut(s)	10
GlaI	GCGC	2 cut(s)	10, 56
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	283
HaeII	RGCGCY	1 cut(s)	58
HaeIII	GGCC	4 cut(s)	303, 447, 503, 687
HapII	CCGG	1 cut(s)	680
HhaI	GCGC	2 cut(s)	11, 57
Hin1II	CATG	7 cut(s)	9, 200, 346, 454, 537, 557, 624
Hin6I	GCGC	2 cut(s)	9, 55
HinP1I	GCGC	2 cut(s)	9, 55
HincII	GTYRAC	1 cut(s)	406
HindII	GTYRAC	1 cut(s)	406
HinfI	GANTC	1 cut(s)	92
HpaII	CCGG	1 cut(s)	680
HphI	GGTGA	3 cut(s)	434, 622, 650
Hpy166II	GTNNAC	3 cut(s)	168, 406, 641
Hpy188I	TCNGA	1 cut(s)	391
Hpy188III	TCNNGA	4 cut(s)	61, 177, 197, 731
Hpy8I	GTNNAC	3 cut(s)	168, 406, 641
HpyAV	CCTTC	2 cut(s)	341, 677
HpyCH4III	ACNGT	3 cut(s)	244, 410, 443
HpyCH4V	TGCA	4 cut(s)	99, 146, 661, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	329, 338, 543, 707
HpyF3I	CTNAG	4 cut(s)	128, 328, 491, 597
Hsp92II	CATG	7 cut(s)	9, 200, 346, 454, 537, 557, 624
HspAI	GCGC	2 cut(s)	9, 55
LmnI	GCTCC	3 cut(s)	209, 275, 626
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	2 cut(s)	448, 664
MabI	ACCWGGT	1 cut(s)	22
MaeIII	GTNAC	4 cut(s)	32, 280, 437, 559
MboII	GAAGA	3 cut(s)	173, 437, 625
MluCI	AATT	3 cut(s)	351, 374, 505
MnlI	CCTC	7 cut(s)	184, 458, 493, 698, 721, 749, 766
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	3 cut(s)	189, 417, 765
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	1 cut(s)	566
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	680
MspR9I	CCNGG	2 cut(s)	24, 548
Mva1269I	GAATGC	2 cut(s)	206, 663
MvaI	CCWGG	2 cut(s)	24, 548
MwoI	GCNNNNNNNGC	4 cut(s)	329, 338, 543, 707
NcoI	CCATGG	1 cut(s)	342
NlaIII	CATG	7 cut(s)	9, 200, 346, 454, 537, 557, 624
NmuCI	GTSAC	2 cut(s)	32, 437
NsbI	TGCGCA	1 cut(s)	10
NspI	RCATGY	1 cut(s)	537
PagI	TCATGA	1 cut(s)	196
PceI	AGGCCT	1 cut(s)	687
PctI	GAATGC	2 cut(s)	206, 663
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	22, 546
PspGI	CCWGG	2 cut(s)	22, 546
PspPI	GGNCC	1 cut(s)	295
RsaI	GTAC	3 cut(s)	21, 496, 650
RsaNI	GTAC	3 cut(s)	20, 495, 649
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	3 cut(s)	189, 417, 765
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	24, 548
SetI	ASST	6 cut(s)	25, 121, 153, 280, 402, 523
SexAI	ACCWGGT	1 cut(s)	22
SfaNI	GCATC	2 cut(s)	448, 664
SinI	GGWCC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	175, 757, 764
SmoI	CTYRAG	3 cut(s)	175, 757, 764
Sse9I	AATT	3 cut(s)	351, 374, 505
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	2 cut(s)	537, 564
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	2 cut(s)	22, 546
StyI	CCWWGG	3 cut(s)	298, 342, 430
TaaI	ACNGT	3 cut(s)	244, 410, 443
TaqI	TCGA	1 cut(s)	184
TasI	AATT	3 cut(s)	351, 374, 505
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	3 cut(s)	189, 417, 765
Tru9I	TTAA	3 cut(s)	189, 417, 765
TscAI	CASTG	2 cut(s)	43, 339
TseFI	GTSAC	2 cut(s)	32, 437
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	32, 437
TspDTI	ATGAA	4 cut(s)	174, 213, 246, 460
TspGWI	ACGGA	2 cut(s)	283, 501
TspRI	CASTG	2 cut(s)	43, 339
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	295
XagI	CCTNNNNNAGG	1 cut(s)	743
XceI	RCATGY	1 cut(s)	537
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.