Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

46392328 .. 46392777

Gene Structure 450 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32669

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTTTTTGATATGTTCATTAATCAAAATCATGGACTCAGTAGCGAGGCTAACTATCCCTACACCGGTGTAGATCGTACATGCAACGCGCAGAAGGAAGCAAACCATGCAGCCTCGATAATTGGCCACGAAGATGTGCCTGCTAACAGTGAAAGTGCACTTCTCAAGGCAGCTGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGCGGATCTGATTTCCAATTCTATTCAAGTGGTGTTTTCACAGGAACCTGTGGAACGAGTCTAGAGCATGGTGTTACTGCTACTGGTTATGGCATCAGCGATGATGGGGCTAAGTATTGGTTGGTTAAGAAATCATGGGGCACAGAATGGGGAGAAGAAGGTTACATAAGAACGCAAGGAGATGTTGCTGCACAGGAAGGTCTTCGTGGCATTGCTATGGCAGCCTCTTACCCCACTACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

149

Amino Acids

15.79

Weight (kDa)

4.65

Isoelectric Point (pI)

15.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	6 - 147	1.8e-38	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	210
AclWI	GGATC	1 cut(s)	220
AcoI	YGGCCR	1 cut(s)	124
AfaI	GTAC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgeI	ACCGGT	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	234
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw21I	GWGCWC	1 cut(s)	160
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	1 cut(s)	220
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	5 cut(s)	110, 170, 173, 395, 428
AseI	ATTAAT	1 cut(s)	21
AsiGI	ACCGGT	1 cut(s)	65
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	206
BaeGI	GKGCMC	2 cut(s)	160, 350
BalI	TGGCCA	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	401
Bbv12I	GWGCWC	1 cut(s)	160
BbvI	GCAGC	5 cut(s)	122, 160, 182, 382, 440
BccI	CCATC	1 cut(s)	305
BfaI	CTAG	2 cut(s)	207, 269
BisI	GCNGC	5 cut(s)	111, 171, 174, 396, 429
BlsI	GCNGC	5 cut(s)	112, 172, 175, 397, 430
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	2 cut(s)	193, 309
BmtI	GCTAGC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	401
BpuEI	CTTGAG	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	65
Bse1I	ACTGG	1 cut(s)	295
Bse3DI	GCAATG	1 cut(s)	417
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMI	GCAATG	1 cut(s)	417
BseMII	CTCAG	1 cut(s)	52
BseNI	ACTGG	1 cut(s)	295
BseSI	GKGCMC	2 cut(s)	160, 350
BseXI	GCAGC	5 cut(s)	122, 160, 182, 382, 440
BsgI	GTGCAG	1 cut(s)	381
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	65
BsiHKAI	GWGCWC	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	65
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	160, 350
Bsp143I	GATC	2 cut(s)	73, 212
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	253
BspOI	GCTAGC	1 cut(s)	210
BspPI	GGATC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	417
BsrFI	RCCGGY	1 cut(s)	65
BsrI	ACTGG	1 cut(s)	295
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	2 cut(s)	73, 212
Bst4CI	ACNGT	1 cut(s)	149
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	141, 208
BstDEI	CTNAG	2 cut(s)	38, 318
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	2 cut(s)	76, 215
BstMBI	GATC	2 cut(s)	73, 212
BstMWI	GCNNNNNNNGC	3 cut(s)	107, 203, 428
BstNSI	RCATGY	1 cut(s)	84
BstSLI	GKGCMC	2 cut(s)	160, 350
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	5 cut(s)	122, 160, 182, 382, 440
BstV2I	GAAGAC	1 cut(s)	401
BstX2I	RGATCY	1 cut(s)	212
BstYI	RGATCY	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	154
Cac8I	GCNNGC	2 cut(s)	141, 208
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	65
Csp6I	GTAC	1 cut(s)	78
CspAI	ACCGGT	1 cut(s)	65
CviAII	CATG	5 cut(s)	32, 81, 107, 275, 342
CviJI	RGCY	6 cut(s)	50, 113, 126, 173, 317, 431
CviKI_1	RGCY	6 cut(s)	50, 113, 126, 173, 317, 431
CviQI	GTAC	1 cut(s)	78
DdeI	CTNAG	2 cut(s)	38, 318
DpnI	GATC	2 cut(s)	75, 214
DpnII	GATC	2 cut(s)	73, 212
EaeI	YGGCCR	1 cut(s)	124
FaeI	CATG	5 cut(s)	35, 84, 110, 278, 345
FaiI	YATR	9 cut(s)	14, 33, 82, 108, 276, 297, 343, 374, 425
FatI	CATG	5 cut(s)	31, 80, 106, 274, 341
Fnu4HI	GCNGC	5 cut(s)	111, 171, 174, 396, 429
Fsp4HI	GCNGC	5 cut(s)	111, 171, 174, 396, 429
FspBI	CTAG	2 cut(s)	207, 269
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	5 cut(s)	111, 171, 174, 396, 429
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	66
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	35, 84, 110, 278, 345
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	2 cut(s)	36, 265
HpaII	CCGG	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	1 cut(s)	269
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	3 cut(s)	88, 359, 398
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	4 cut(s)	84, 110, 158, 398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	107, 203, 428
HpyF3I	CTNAG	2 cut(s)	38, 318
Hsp92II	CATG	5 cut(s)	35, 84, 110, 278, 345
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	73, 212
LpnPI	CCDG	6 cut(s)	79, 153, 234, 268, 276, 386
Lsp1109I	GCAGC	5 cut(s)	122, 160, 182, 382, 440
LweI	GCATC	2 cut(s)	193, 309
MaeI	CTAG	2 cut(s)	207, 269
MaeIII	GTNAC	2 cut(s)	280, 368
MalI	GATC	2 cut(s)	75, 214
MboI	GATC	2 cut(s)	73, 212
MboII	GAAGA	3 cut(s)	143, 374, 401
MflI	RGATCY	1 cut(s)	212
MhlI	GDGCHC	2 cut(s)	160, 350
MlsI	TGGCCA	1 cut(s)	126
MluCI	AATT	2 cut(s)	120, 224
MluNI	TGGCCA	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	30, 274
MnlI	CCTC	3 cut(s)	40, 124, 442
Mox20I	TGGCCA	1 cut(s)	126
MroXI	GAANNNNTTC	1 cut(s)	408
MscI	TGGCCA	1 cut(s)	126
MseI	TTAA	2 cut(s)	21, 333
MslI	CAYNNNNRTG	2 cut(s)	132, 422
Msp20I	TGGCCA	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	107, 203, 428
NdeII	GATC	2 cut(s)	73, 212
NheI	GCTAGC	1 cut(s)	206
NlaIII	CATG	5 cut(s)	35, 84, 110, 278, 345
NlaIV	GGNNCC	1 cut(s)	253
NspI	RCATGY	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	408
PinAI	ACCGGT	1 cut(s)	65
PkrI	GCNGC	5 cut(s)	112, 172, 175, 397, 430
PleI	GAGTC	2 cut(s)	30, 273
PpsI	GAGTC	2 cut(s)	30, 273
PshBI	ATTAAT	1 cut(s)	21
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	79
RsaNI	GTAC	1 cut(s)	78
RseI	CAYNNNNRTG	2 cut(s)	132, 422
SaqAI	TTAA	2 cut(s)	21, 333
SatI	GCNGC	5 cut(s)	111, 171, 174, 396, 429
Sau3AI	GATC	2 cut(s)	73, 212
SchI	GAGTC	2 cut(s)	30, 274
SduI	GDGCHC	2 cut(s)	160, 350
SetI	ASST	6 cut(s)	175, 187, 257, 370, 409, 449
SfaNI	GCATC	2 cut(s)	193, 309
SgrAI	CRCCGGYG	1 cut(s)	65
SmiMI	CAYNNNNRTG	2 cut(s)	132, 422
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	2 cut(s)	120, 224
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	2 cut(s)	207, 269
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	1 cut(s)	116
TasI	AATT	2 cut(s)	120, 224
Tru1I	TTAA	2 cut(s)	21, 333
Tru9I	TTAA	2 cut(s)	21, 333
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	5 cut(s)	110, 170, 173, 395, 428
TspDTI	ATGAA	1 cut(s)	7
TspRI	CASTG	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	156
VspI	ATTAAT	1 cut(s)	21
XbaI	TCTAGA	1 cut(s)	268
XceI	RCATGY	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	207, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.