RLG00000019078

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
45971777 .. 45972919
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019078

Sequence Viewer

Length: 1005 bp
ATGGAGTTCACCAACCAGATGTGCAACGGTATCTGTTTGGCCTTGATCCTCGTGCTGGGGGTTTGGTCTTCTGAGGCCACTTCTCGCAATCTCCAAGATGCATCAATGTATGGGAGGTACGAGCAATGGATGGCTCGTTATGGACGTGTCTACAATGACATGAACGAAAAGGAAGAACGCTTCAATATATTCAAGGACAATGTGGCATTTATAGAATCTTCCAATAATGCAGGAAACAAACTTTACAAATTGAGTGTGAATCAATTTGCAGACCTTACGAATGAAGAATTCACTACCGCAAGAAATCGGTTCAAGGGGCATGAGTGTTCCACAAAGACCACTACTTTCAAGTATGAAAATGCTAGCGTGCCAGCTACAATGGACTGGAGGCAGAAAGGAGCTGTAACTCCCATCAAGGACCAAGGCCAATGTGCCGTGGCAGCCACGGAAGGAATTACTCAACTTACAACTGGTAAATTGATTTCTTTGTCTGAGCAAGAGCTAGTTGACTGTGATGTCAATGGTGAAGATCAAGGCTGTGAGGGTGGCTTGATGGACGATGCCTTTCAGTTCATCAATCAAAATCATGGACTCAGTACCGAAGCTAATTATCCATACACTGGTGTTGATGGTACATGCAATGCCAAGAAGGAAGCAGACCACGCAGCGTCAATCACAGGCCACGAAGATGTGCCTGCAAATAGTGAAAGTGCACTCCTTAAGGCCGTCGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGTGGATCCGATTTCCAGTTCTACTCAAGTGGTGTTTTCACAGGATCCTGTGGAACTAGCCTAGACCATGGTGTTACCGCTGTTGGTTATGGTGTTAGCGATGATGGGACTAAGTACTGGCTGGTGAAGAACTCATGGGGTGAACAATGGGGTGAAGAAGGTTACATAAGGATGCAAAGAGATGTTTCTGCACCAGAAGGTCTCTGTGGCATTGCCATGGAAGCTTCCTATCCCACTGCATAA

Protein Analysis

335

Amino Acids

36.48

Weight (kDa)

4.58

Isoelectric Point (pI)

23.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 40 - 97 3e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 123 - 333 3.6e-73 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 515
AccB7I CCANNNNNTGG 1 cut(s) 620
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 297, 840
AclWI GGATC 5 cut(s) 40, 762, 775, 801, 814
AcsI RAATTY 1 cut(s) 287
AfaI GTAC 4 cut(s) 119, 598, 634, 878
AfiI CCNNNNNNNGG 2 cut(s) 55, 620
AflII CTTAAG 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 145
AgsI TTSAA 4 cut(s) 184, 193, 313, 349
AjiI CACGTC 1 cut(s) 146
AluBI AGCT 5 cut(s) 374, 401, 502, 605, 986
AluI AGCT 5 cut(s) 374, 401, 502, 605, 986
Alw21I GWGCWC 1 cut(s) 715
Alw26I GTCTC 1 cut(s) 968
Alw44I GTGCAC 1 cut(s) 711
AlwI GGATC 5 cut(s) 40, 762, 775, 801, 814
AoxI GGCC 5 cut(s) 39, 75, 424, 679, 723
ApaLI GTGCAC 1 cut(s) 711
ApeKI GCWGC 2 cut(s) 440, 665
ApoI RAATTY 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 418
AsuHPI GGTGA 4 cut(s) 536, 898, 914, 926
AsuNHI GCTAGC 1 cut(s) 362
AvaII GGWCC 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 715
BamHI GGATCC 2 cut(s) 767, 806
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 60
Bbv12I GWGCWC 1 cut(s) 715
BbvI GCAGC 2 cut(s) 452, 677
BccI CCATC 5 cut(s) 124, 419, 547, 623, 860
BceAI ACGGC 2 cut(s) 419, 710
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 5 cut(s) 363, 503, 762, 819, 824
BfrI CTTAAG 1 cut(s) 719
BisI GCNGC 2 cut(s) 441, 666
BlsI GCNGC 2 cut(s) 442, 667
BmcAI AGTACT 1 cut(s) 878
Bme18I GGWCC 1 cut(s) 418
BmgBI CACGTC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 418
BmiI GGNNCC 2 cut(s) 769, 808
BmsI GCATC 5 cut(s) 88, 110, 550, 748, 924
BmtI GCTAGC 1 cut(s) 366
BpiI GAAGAC 1 cut(s) 60
BpmI CTGGAG 1 cut(s) 406
BpuEI CTTGAG 1 cut(s) 772
BsaI GGTCTC 1 cut(s) 968
BsaJI CCNNGG 5 cut(s) 421, 435, 444, 829, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 620
Bse1I ACTGG 5 cut(s) 389, 475, 625, 778, 884
Bse3DI GCAATG 3 cut(s) 131, 646, 972
BseDI CCNNGG 5 cut(s) 421, 435, 444, 829, 978
BseGI GGATG 2 cut(s) 135, 939
BseLI CCNNNNNNNGG 2 cut(s) 55, 620
BseMI GCAATG 3 cut(s) 131, 646, 972
BseMII CTCAG 3 cut(s) 63, 483, 607
BseNI ACTGG 5 cut(s) 389, 475, 625, 778, 884
BseSI GKGCMC 1 cut(s) 715
BseXI GCAGC 2 cut(s) 452, 677
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 1 cut(s) 936
BshFI GGCC 5 cut(s) 41, 77, 426, 681, 725
BsiHKAI GWGCWC 1 cut(s) 715
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 2 cut(s) 55, 620
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 883
BsnI GGCC 5 cut(s) 41, 77, 426, 681, 725
Bso31I GGTCTC 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 715
Bsp143I GATC 4 cut(s) 45, 529, 767, 806
Bsp19I CCATGG 2 cut(s) 829, 978
BspACI CCGC 2 cut(s) 297, 840
BspANI GGCC 5 cut(s) 41, 77, 426, 681, 725
BspCNI CTCAG 3 cut(s) 64, 484, 606
BspLI GGNNCC 2 cut(s) 769, 808
BspOI GCTAGC 1 cut(s) 366
BspPI GGATC 5 cut(s) 40, 762, 775, 801, 814
BspTI CTTAAG 1 cut(s) 719
BspTNI GGTCTC 1 cut(s) 968
BsrDI GCAATG 3 cut(s) 131, 646, 972
BsrI ACTGG 5 cut(s) 389, 475, 625, 778, 884
BssECI CCNNGG 5 cut(s) 421, 435, 444, 829, 978
BssMI GATC 4 cut(s) 45, 529, 767, 806
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 3 cut(s) 421, 829, 978
Bst2BI CACGAG 1 cut(s) 50
Bst4CI ACNGT 2 cut(s) 29, 512
BstAFI CTTAAG 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 364, 368, 372, 696
BstDEI CTNAG 4 cut(s) 72, 492, 593, 873
BstDSI CCRYGG 4 cut(s) 435, 444, 829, 978
BstF5I GGATG 2 cut(s) 135, 939
BstKTI GATC 4 cut(s) 48, 532, 770, 809
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 4 cut(s) 45, 529, 767, 806
BstMWI GCNNNNNNNGC 4 cut(s) 440, 662, 758, 983
BstNSI RCATGY 1 cut(s) 639
BstSLI GKGCMC 1 cut(s) 715
BstV1I GCAGC 2 cut(s) 452, 677
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 767, 806
BstYI RGATCY 2 cut(s) 767, 806
BsuRI GGCC 5 cut(s) 41, 77, 426, 681, 725
BtgI CCRYGG 4 cut(s) 435, 444, 829, 978
BtgZI GCGATG 1 cut(s) 876
BtrI CACGTC 1 cut(s) 146
BtsCI GGATG 2 cut(s) 135, 939
BtsI GCAGTG 1 cut(s) 996
BtsIMutI CAGTG 2 cut(s) 618, 996
Cac8I GCNNGC 4 cut(s) 364, 368, 372, 696
Cfr13I GGNCC 1 cut(s) 418
CseI GACGC 1 cut(s) 657
Csp6I GTAC 4 cut(s) 118, 597, 633, 877
CviAII CATG 7 cut(s) 160, 320, 587, 636, 830, 897, 979
CviQI GTAC 4 cut(s) 118, 597, 633, 877
DdeI CTNAG 4 cut(s) 72, 492, 593, 873
DpnI GATC 4 cut(s) 47, 531, 769, 808
DpnII GATC 4 cut(s) 45, 529, 767, 806
DrdI GACNNNNNNGTC 1 cut(s) 515
DseDI GACNNNNNNGTC 1 cut(s) 515
Eco130I CCWWGG 3 cut(s) 421, 829, 978
Eco31I GGTCTC 1 cut(s) 968
Eco47I GGWCC 1 cut(s) 418
EcoRI GAATTC 1 cut(s) 287
EcoT14I CCWWGG 3 cut(s) 421, 829, 978
EcoT22I ATGCAT 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 421, 829, 978
FaeI CATG 7 cut(s) 163, 323, 590, 639, 833, 900, 982
FaqI GGGAC 1 cut(s) 883
FatI CATG 7 cut(s) 159, 319, 586, 635, 829, 896, 978
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 2 cut(s) 441, 666
FokI GGATG 2 cut(s) 142, 946
Fsp4HI GCNGC 2 cut(s) 441, 666
FspBI CTAG 5 cut(s) 363, 503, 762, 819, 824
GluI GCNGC 2 cut(s) 441, 666
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 406
HaeIII GGCC 5 cut(s) 41, 77, 426, 681, 725
HgaI GACGC 1 cut(s) 657
Hin1II CATG 7 cut(s) 163, 323, 590, 639, 833, 900, 982
HincII GTYRAC 1 cut(s) 508
HindII GTYRAC 1 cut(s) 508
HindIII AAGCTT 1 cut(s) 984
HinfI GANTC 3 cut(s) 215, 259, 591
HphI GGTGA 4 cut(s) 536, 898, 914, 926
Hpy166II GTNNAC 5 cut(s) 9, 151, 508, 713, 905
Hpy188I TCNGA 3 cut(s) 73, 493, 772
Hpy8I GTNNAC 5 cut(s) 9, 151, 508, 713, 905
Hpy99I CGWCG 1 cut(s) 731
HpyAV CCTTC 4 cut(s) 443, 643, 914, 953
HpyCH4III ACNGT 2 cut(s) 29, 512
HpyCH4IV ACGT 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 662, 758, 983
HpyF3I CTNAG 4 cut(s) 72, 492, 593, 873
HpySE526I ACGT 1 cut(s) 145
Hsp92II CATG 7 cut(s) 163, 323, 590, 639, 833, 900, 982
Kzo9I GATC 4 cut(s) 45, 529, 767, 806
LmnI GCTCC 1 cut(s) 398
Lsp1109I GCAGC 2 cut(s) 452, 677
LweI GCATC 5 cut(s) 88, 110, 550, 748, 924
MaeI CTAG 5 cut(s) 363, 503, 762, 819, 824
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 3 cut(s) 403, 835, 923
MalI GATC 4 cut(s) 47, 531, 769, 808
MboI GATC 4 cut(s) 45, 529, 767, 806
MboII GAAGA 8 cut(s) 60, 185, 210, 296, 539, 698, 901, 929
MflI RGATCY 2 cut(s) 767, 806
MhlI GDGCHC 1 cut(s) 715
MluCI AATT 6 cut(s) 248, 263, 287, 453, 476, 607
MlyI GAGTC 1 cut(s) 585
MnlI CCTC 5 cut(s) 59, 67, 108, 381, 535
Mph1103I ATGCAT 1 cut(s) 103
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 3 cut(s) 687, 932, 977
MspA1I CMGCKG 1 cut(s) 842
MspCI CTTAAG 1 cut(s) 719
MwoI GCNNNNNNNGC 4 cut(s) 440, 662, 758, 983
NcoI CCATGG 2 cut(s) 829, 978
NdeII GATC 4 cut(s) 45, 529, 767, 806
NheI GCTAGC 1 cut(s) 362
NlaIII CATG 7 cut(s) 163, 323, 590, 639, 833, 900, 982
NlaIV GGNNCC 2 cut(s) 769, 808
NsiI ATGCAT 1 cut(s) 103
NspI RCATGY 1 cut(s) 639
PcsI WCGNNNNNNNCGW 1 cut(s) 142
PfeI GAWTC 2 cut(s) 215, 259
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 2 cut(s) 442, 667
PleI GAGTC 1 cut(s) 585
PpsI GAGTC 1 cut(s) 585
PspFI CCCAGC 1 cut(s) 55
PspN4I GGNNCC 2 cut(s) 769, 808
PspPI GGNCC 1 cut(s) 418
PsuI RGATCY 2 cut(s) 767, 806
RsaI GTAC 4 cut(s) 119, 598, 634, 878
RsaNI GTAC 4 cut(s) 118, 597, 633, 877
RseI CAYNNNNRTG 3 cut(s) 687, 932, 977
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 2 cut(s) 441, 666
Sau3AI GATC 4 cut(s) 45, 529, 767, 806
Sau96I GGNCC 1 cut(s) 418
ScaI AGTACT 1 cut(s) 878
SchI GAGTC 1 cut(s) 585
SduI GDGCHC 1 cut(s) 715
SfaNI GCATC 5 cut(s) 88, 110, 550, 748, 924
SinI GGWCC 1 cut(s) 418
SmiMI CAYNNNNRTG 3 cut(s) 687, 932, 977
SmlI CTYRAG 2 cut(s) 719, 787
SmoI CTYRAG 2 cut(s) 719, 787
Sse9I AATT 6 cut(s) 248, 263, 287, 453, 476, 607
SsiI CCGC 2 cut(s) 297, 840
SspMI CTAG 5 cut(s) 363, 503, 762, 819, 824
StyI CCWWGG 3 cut(s) 421, 829, 978
TaaI ACNGT 2 cut(s) 29, 512
TaiI ACGT 1 cut(s) 148
TasI AATT 6 cut(s) 248, 263, 287, 453, 476, 607
TatI WGTACW 1 cut(s) 876
TfiI GAWTC 2 cut(s) 215, 259
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 2 cut(s) 625, 1003
TseI GCWGC 2 cut(s) 440, 665
TspDTI ATGAA 4 cut(s) 176, 297, 369, 562
TspGWI ACGGA 1 cut(s) 461
TspRI CASTG 2 cut(s) 625, 1003
Van91I CCANNNNNTGG 1 cut(s) 620
Vha464I CTTAAG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 711
VpaK11BI GGWCC 1 cut(s) 418
XapI RAATTY 1 cut(s) 287
XceI RCATGY 1 cut(s) 639
XmiI GTMKAC 1 cut(s) 150
XspI CTAG 5 cut(s) 363, 503, 762, 819, 824
ZrmI AGTACT 1 cut(s) 878
Zsp2I ATGCAT 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.