Rmu_sc0001171.1_g000013

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001171.1
Physical Location & Seq
Reverse (-)
54205 .. 55241
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001171.1_g000013.1.cds

Sequence Viewer

Length: 921 bp
atgtatgagaggtacgagcaatggatggctcattatggacgtgtttataatgacatgaccgaaaaggaggaccgcttcaaaatattcaaggacaatgtggcatttatagaatcttccaataatgcaggaaacaaactttacaaattgagtgtgaatcaatttgcagaccttacgaatgaagaattcactactgcaagaaatcggttcaaggggcatgagtgctccacaaagaccactactttcaagtatgaaaatgctagcgtgccagctacaatggactggaggcagaaaggagctgtaactcccatcaaggaccaaggccagtgtggatgttgttgggcgttctcagccgtggcagccatggaaggaattactcaacttacaactggtaaattgatttctttgtctgagcaagagttggttgactgtgatgtcaatggtgaagatcaaggctgtgagggtggcttgatggacgatgcctttcagttcatcaatcaaaatcatggactcagtaccgaagctaattatccatacactggtggtgatggtacatgcaatgccaagaaggaagcagaccatgcagcctcaatcacaggccacgaagatgtgcctgcaaatagagaaagtgcacttcttaaggccgtcggtaatcaagctatttctgttgccattgatgctagtggatccgatttccagttctactcaagtggtgttttcacaggaacctgtggaactagcctagaccatggtgttaccgctgttggttatggtgctagcaatgatgggactaagtactggctggtgaagaactcatggggtgaacaatggggtgaagaaggttacataaggatgcaaagagatgtttctgcaccagaaggtctctgtggcattgccatggaagcttcctatcccactgcataa

Protein Analysis

306

Amino Acids

33.48

Weight (kDa)

4.73

Isoelectric Point (pI)

17.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 48
AasI GACNNNNNNGTC 1 cut(s) 431
AccB7I CCANNNNNTGG 1 cut(s) 536
AciI CCGC 2 cut(s) 73, 756
AclWI GGATC 2 cut(s) 678, 691
AcsI RAATTY 1 cut(s) 182
AfaI GTAC 4 cut(s) 14, 514, 550, 794
AfiI CCNNNNNNNGG 1 cut(s) 536
AflII CTTAAG 1 cut(s) 635
AflIII ACRYGT 1 cut(s) 40
AgsI TTSAA 4 cut(s) 79, 88, 208, 244
AjiI CACGTC 1 cut(s) 41
AluBI AGCT 5 cut(s) 269, 296, 521, 656, 902
AluI AGCT 5 cut(s) 269, 296, 521, 656, 902
Alw21I GWGCWC 2 cut(s) 224, 631
Alw26I GTCTC 1 cut(s) 884
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 2 cut(s) 678, 691
AoxI GGCC 3 cut(s) 319, 595, 639
ApaLI GTGCAC 1 cut(s) 627
ApeKI GCWGC 2 cut(s) 356, 581
ApoI RAATTY 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 70, 313
AsuHPI GGTGA 5 cut(s) 452, 554, 814, 830, 842
AsuNHI GCTAGC 2 cut(s) 257, 773
AvaII GGWCC 2 cut(s) 70, 313
BaeGI GKGCMC 1 cut(s) 631
BamHI GGATCC 1 cut(s) 683
Bbv12I GWGCWC 2 cut(s) 224, 631
BbvI GCAGC 2 cut(s) 368, 593
BccI CCATC 5 cut(s) 19, 314, 463, 539, 776
BceAI ACGGC 2 cut(s) 335, 626
BcoDI GTCTC 1 cut(s) 884
BfaI CTAG 5 cut(s) 258, 678, 735, 740, 774
BfrI CTTAAG 1 cut(s) 635
BisI GCNGC 2 cut(s) 357, 582
BlsI GCNGC 2 cut(s) 358, 583
BmcAI AGTACT 1 cut(s) 794
Bme18I GGWCC 2 cut(s) 70, 313
BmgBI CACGTC 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 70, 313
BmiI GGNNCC 2 cut(s) 685, 724
BmsI GCATC 3 cut(s) 466, 664, 840
BmtI GCTAGC 2 cut(s) 261, 777
BpmI CTGGAG 1 cut(s) 301
BpuEI CTTGAG 1 cut(s) 688
BsaI GGTCTC 1 cut(s) 884
BsaJI CCNNGG 5 cut(s) 316, 351, 360, 745, 894
Bsc4I CCNNNNNNNGG 1 cut(s) 536
Bse1I ACTGG 6 cut(s) 284, 322, 391, 541, 694, 800
Bse3DI GCAATG 4 cut(s) 26, 562, 784, 888
BseDI CCNNGG 5 cut(s) 316, 351, 360, 745, 894
BseGI GGATG 3 cut(s) 30, 335, 855
BseLI CCNNNNNNNGG 1 cut(s) 536
BseMI GCAATG 4 cut(s) 26, 562, 784, 888
BseMII CTCAG 3 cut(s) 360, 399, 523
BseNI ACTGG 6 cut(s) 284, 322, 391, 541, 694, 800
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 2 cut(s) 368, 593
BsgI GTGCAG 1 cut(s) 852
BshFI GGCC 3 cut(s) 321, 597, 641
BsiHKAI GWGCWC 2 cut(s) 224, 631
BslFI GGGAC 1 cut(s) 799
BslI CCNNNNNNNGG 1 cut(s) 536
BsmAI GTCTC 1 cut(s) 884
BsmFI GGGAC 1 cut(s) 799
BsnI GGCC 3 cut(s) 321, 597, 641
Bso31I GGTCTC 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 224, 631
Bsp143I GATC 2 cut(s) 445, 683
Bsp19I CCATGG 3 cut(s) 360, 745, 894
BspACI CCGC 2 cut(s) 73, 756
BspANI GGCC 3 cut(s) 321, 597, 641
BspCNI CTCAG 3 cut(s) 359, 400, 522
BspLI GGNNCC 2 cut(s) 685, 724
BspOI GCTAGC 2 cut(s) 261, 777
BspPI GGATC 2 cut(s) 678, 691
BspTI CTTAAG 1 cut(s) 635
BspTNI GGTCTC 1 cut(s) 884
BsrDI GCAATG 4 cut(s) 26, 562, 784, 888
BsrI ACTGG 6 cut(s) 284, 322, 391, 541, 694, 800
BssECI CCNNGG 5 cut(s) 316, 351, 360, 745, 894
BssMI GATC 2 cut(s) 445, 683
BssT1I CCWWGG 4 cut(s) 316, 360, 745, 894
Bst4CI ACNGT 1 cut(s) 428
BstAFI CTTAAG 1 cut(s) 635
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 5 cut(s) 259, 263, 267, 612, 775
BstDEI CTNAG 4 cut(s) 346, 408, 509, 789
BstDSI CCRYGG 4 cut(s) 351, 360, 745, 894
BstF5I GGATG 3 cut(s) 30, 335, 855
BstKTI GATC 2 cut(s) 448, 686
BstMAI GTCTC 1 cut(s) 884
BstMBI GATC 2 cut(s) 445, 683
BstMWI GCNNNNNNNGC 5 cut(s) 347, 356, 578, 674, 899
BstNSI RCATGY 1 cut(s) 555
BstSLI GKGCMC 1 cut(s) 631
BstV1I GCAGC 2 cut(s) 368, 593
BstX2I RGATCY 1 cut(s) 683
BstYI RGATCY 1 cut(s) 683
BsuRI GGCC 3 cut(s) 321, 597, 641
BtgI CCRYGG 4 cut(s) 351, 360, 745, 894
BtrI CACGTC 1 cut(s) 41
BtsCI GGATG 3 cut(s) 30, 335, 855
BtsI GCAGTG 1 cut(s) 912
BtsIMutI CAGTG 3 cut(s) 329, 534, 912
Cac8I GCNNGC 5 cut(s) 259, 263, 267, 612, 775
Cfr13I GGNCC 2 cut(s) 70, 313
Csp6I GTAC 4 cut(s) 13, 513, 549, 793
CviAII CATG 9 cut(s) 55, 215, 361, 503, 552, 578, 746, 813, 895
CviQI GTAC 4 cut(s) 13, 513, 549, 793
DdeI CTNAG 4 cut(s) 346, 408, 509, 789
DpnI GATC 2 cut(s) 447, 685
DpnII GATC 2 cut(s) 445, 683
DrdI GACNNNNNNGTC 1 cut(s) 431
DseDI GACNNNNNNGTC 1 cut(s) 431
Eco130I CCWWGG 4 cut(s) 316, 360, 745, 894
Eco31I GGTCTC 1 cut(s) 884
Eco47I GGWCC 2 cut(s) 70, 313
EcoRI GAATTC 1 cut(s) 182
EcoT14I CCWWGG 4 cut(s) 316, 360, 745, 894
ErhI CCWWGG 4 cut(s) 316, 360, 745, 894
FaeI CATG 9 cut(s) 58, 218, 364, 506, 555, 581, 749, 816, 898
FaqI GGGAC 1 cut(s) 799
FatI CATG 9 cut(s) 54, 214, 360, 502, 551, 577, 745, 812, 894
Fnu4HI GCNGC 2 cut(s) 357, 582
FokI GGATG 3 cut(s) 37, 342, 862
Fsp4HI GCNGC 2 cut(s) 357, 582
FspBI CTAG 5 cut(s) 258, 678, 735, 740, 774
GluI GCNGC 2 cut(s) 357, 582
GsuI CTGGAG 1 cut(s) 301
HaeIII GGCC 3 cut(s) 321, 597, 641
Hin1II CATG 9 cut(s) 58, 218, 364, 506, 555, 581, 749, 816, 898
HincII GTYRAC 1 cut(s) 424
HindII GTYRAC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 900
HinfI GANTC 3 cut(s) 110, 154, 507
HphI GGTGA 5 cut(s) 452, 554, 814, 830, 842
Hpy166II GTNNAC 3 cut(s) 424, 629, 821
Hpy188I TCNGA 2 cut(s) 409, 688
Hpy8I GTNNAC 3 cut(s) 424, 629, 821
Hpy99I CGWCG 1 cut(s) 647
HpyAV CCTTC 4 cut(s) 359, 559, 830, 869
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 5 cut(s) 347, 356, 578, 674, 899
HpyF3I CTNAG 4 cut(s) 346, 408, 509, 789
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 9 cut(s) 58, 218, 364, 506, 555, 581, 749, 816, 898
Kzo9I GATC 2 cut(s) 445, 683
LmnI GCTCC 2 cut(s) 227, 293
Lsp1109I GCAGC 2 cut(s) 368, 593
LweI GCATC 3 cut(s) 466, 664, 840
MaeI CTAG 5 cut(s) 258, 678, 735, 740, 774
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 3 cut(s) 298, 751, 839
MalI GATC 2 cut(s) 447, 685
MboI GATC 2 cut(s) 445, 683
MboII GAAGA 6 cut(s) 105, 191, 455, 614, 817, 845
MflI RGATCY 1 cut(s) 683
MhlI GDGCHC 2 cut(s) 224, 631
MluCI AATT 6 cut(s) 143, 158, 182, 369, 392, 523
MlyI GAGTC 1 cut(s) 501
MnlI CCTC 5 cut(s) 3, 61, 276, 451, 595
MseI TTAA 1 cut(s) 636
MslI CAYNNNNRTG 3 cut(s) 603, 848, 893
MspA1I CMGCKG 1 cut(s) 758
MspCI CTTAAG 1 cut(s) 635
MwoI GCNNNNNNNGC 5 cut(s) 347, 356, 578, 674, 899
NcoI CCATGG 3 cut(s) 360, 745, 894
NdeII GATC 2 cut(s) 445, 683
NheI GCTAGC 2 cut(s) 257, 773
NlaIII CATG 9 cut(s) 58, 218, 364, 506, 555, 581, 749, 816, 898
NlaIV GGNNCC 2 cut(s) 685, 724
NspI RCATGY 1 cut(s) 555
PfeI GAWTC 2 cut(s) 110, 154
PflMI CCANNNNNTGG 1 cut(s) 536
PkrI GCNGC 2 cut(s) 358, 583
PleI GAGTC 1 cut(s) 501
PpsI GAGTC 1 cut(s) 501
PsiI TTATAA 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 685, 724
PspPI GGNCC 2 cut(s) 70, 313
PsuI RGATCY 1 cut(s) 683
RsaI GTAC 4 cut(s) 14, 514, 550, 794
RsaNI GTAC 4 cut(s) 13, 513, 549, 793
RseI CAYNNNNRTG 3 cut(s) 603, 848, 893
SaqAI TTAA 1 cut(s) 636
SatI GCNGC 2 cut(s) 357, 582
Sau3AI GATC 2 cut(s) 445, 683
Sau96I GGNCC 2 cut(s) 70, 313
ScaI AGTACT 1 cut(s) 794
SchI GAGTC 1 cut(s) 501
SduI GDGCHC 2 cut(s) 224, 631
SfaNI GCATC 3 cut(s) 466, 664, 840
SinI GGWCC 2 cut(s) 70, 313
SmiMI CAYNNNNRTG 3 cut(s) 603, 848, 893
SmlI CTYRAG 2 cut(s) 635, 703
SmoI CTYRAG 2 cut(s) 635, 703
Sse9I AATT 6 cut(s) 143, 158, 182, 369, 392, 523
SsiI CCGC 2 cut(s) 73, 756
SspI AATATT 1 cut(s) 84
SspMI CTAG 5 cut(s) 258, 678, 735, 740, 774
StyI CCWWGG 4 cut(s) 316, 360, 745, 894
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 43
TaqII GACCGA 1 cut(s) 74
TasI AATT 6 cut(s) 143, 158, 182, 369, 392, 523
TatI WGTACW 1 cut(s) 792
TfiI GAWTC 2 cut(s) 110, 154
Tru1I TTAA 1 cut(s) 636
Tru9I TTAA 1 cut(s) 636
TscAI CASTG 3 cut(s) 329, 541, 919
TseI GCWGC 2 cut(s) 356, 581
TspDTI ATGAA 3 cut(s) 192, 264, 478
TspRI CASTG 3 cut(s) 329, 541, 919
Van91I CCANNNNNTGG 1 cut(s) 536
Vha464I CTTAAG 1 cut(s) 635
VneI GTGCAC 1 cut(s) 627
VpaK11BI GGWCC 2 cut(s) 70, 313
XapI RAATTY 1 cut(s) 182
XceI RCATGY 1 cut(s) 555
XcmI CCANNNNNNNNNTGG 1 cut(s) 323
XspI CTAG 5 cut(s) 258, 678, 735, 740, 774
ZrmI AGTACT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.