Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008800.1

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

38502 .. 39023

Gene Structure 522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008800.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atggaaggaatcactcgactttcaacaggaaaattaatctctttgtccaagcaagagatggttgactatgatgtgaatggcttgatggacaatgcttttgagttcatcaatcaaaatcacggacttagtactgaggctaattacccatacaccggtgttgatggtacatgcaatgcccagaaggaagcaagctatgcagcctcaataactagtcatgaagatgtgcctgcaaatagtgaaagtgcccttcttaaggccgtcgccaatcaacccatttccgttgccattgatgccagtggatctgatttccaattctatttaagtggtgttttcacaggaacttgtggaacaagcctagaccatggtgttattgctattagttatggcgtcagtgatgatgggactaagtattggttggttaagaactcgttatggatgtggtctttctatggcagcctcttaccctactgcataagtaatataccatcaagtcaaatgaatgctacatactatcttttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

173

Amino Acids

18.8

Weight (kDa)

4.38

Isoelectric Point (pI)

25.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	307
AcyI	GRCGYC	1 cut(s)	387
AfaI	GTAC	2 cut(s)	130, 166
AfiI	CCNNNNNNNGG	2 cut(s)	152, 253
AflII	CTTAAG	1 cut(s)	251
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	24
AhlI	ACTAGT	1 cut(s)	209
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
AlwI	GGATC	1 cut(s)	307
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	197, 453
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AseI	ATTAAT	1 cut(s)	35
AsiGI	ACCGGT	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	209, 465
BccI	CCATC	5 cut(s)	52, 79, 155, 392, 493
BceAI	ACGGC	1 cut(s)	242
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	3 cut(s)	210, 356, 520
BfrI	CTTAAG	1 cut(s)	251
BisI	GCNGC	2 cut(s)	198, 454
BlsI	GCNGC	2 cut(s)	199, 455
BmcAI	AGTACT	1 cut(s)	130
BmsI	GCATC	1 cut(s)	280
BsaHI	GRCGYC	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	361
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 253
Bse118I	RCCGGY	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	152, 253
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	123
BseNI	ACTGG	1 cut(s)	294
BseSI	GKGCMC	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	209, 465
BshFI	GGCC	1 cut(s)	257
BshTI	ACCGGT	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	2 cut(s)	152, 253
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	299
Bsp19I	CCATGG	1 cut(s)	361
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	214
BspPI	GGATC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	1 cut(s)	299
BssNI	GRCGYC	1 cut(s)	387
BssT1I	CCWWGG	1 cut(s)	361
BstACI	GRCGYC	1 cut(s)	387
BstAFI	CTTAAG	1 cut(s)	251
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	190, 228
BstDEI	CTNAG	3 cut(s)	125, 132, 405
BstDSI	CCRYGG	1 cut(s)	361
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	1 cut(s)	441
BstKTI	GATC	1 cut(s)	302
BstMBI	GATC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	2 cut(s)	194, 290
BstNSI	RCATGY	1 cut(s)	171
BstSLI	GKGCMC	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	209, 465
BstX2I	RGATCY	1 cut(s)	299
BstYI	RGATCY	1 cut(s)	299
BsuRI	GGCC	1 cut(s)	257
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	441
BtsIMutI	CAGTG	2 cut(s)	301, 397
Cac8I	GCNNGC	2 cut(s)	190, 228
CciI	TCATGA	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	152
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	129, 165
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	3 cut(s)	168, 215, 362
CviJI	RGCY	7 cut(s)	81, 137, 192, 200, 257, 354, 456
CviKI_1	RGCY	7 cut(s)	81, 137, 192, 200, 257, 354, 456
CviQI	GTAC	2 cut(s)	129, 165
DdeI	CTNAG	3 cut(s)	125, 132, 405
DpnI	GATC	1 cut(s)	301
DpnII	GATC	1 cut(s)	299
Eco130I	CCWWGG	1 cut(s)	361
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoT14I	CCWWGG	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	361
FaeI	CATG	3 cut(s)	171, 218, 365
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	3 cut(s)	167, 214, 361
Fnu4HI	GCNGC	2 cut(s)	198, 454
FokI	GGATG	1 cut(s)	448
Fsp4HI	GCNGC	2 cut(s)	198, 454
FspBI	CTAG	3 cut(s)	210, 356, 520
GluI	GCNGC	2 cut(s)	198, 454
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	3 cut(s)	171, 218, 365
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	1 cut(s)	215
Hpy8I	GTNNAC	1 cut(s)	64
Hpy99I	CGWCG	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	175, 257
HpyCH4V	TGCA	4 cut(s)	171, 197, 230, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	194, 290
HpyF3I	CTNAG	3 cut(s)	125, 132, 405
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	3 cut(s)	171, 218, 365
Kzo9I	GATC	1 cut(s)	299
LpnPI	CCDG	6 cut(s)	12, 166, 191, 240, 307, 321
Lsp1109I	GCAGC	2 cut(s)	209, 465
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	210, 356, 520
MalI	GATC	1 cut(s)	301
MboI	GATC	1 cut(s)	299
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	247
MluCI	AATT	3 cut(s)	32, 139, 311
MnlI	CCTC	3 cut(s)	127, 211, 467
MseI	TTAA	4 cut(s)	35, 252, 320, 420
MslI	CAYNNNNRTG	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	251
MspI	CCGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	2 cut(s)	194, 290
NcoI	CCATGG	1 cut(s)	361
NdeII	GATC	1 cut(s)	299
NlaIII	CATG	3 cut(s)	171, 218, 365
NspI	RCATGY	1 cut(s)	171
PagI	TCATGA	1 cut(s)	214
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	199, 455
PshBI	ATTAAT	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	299
RsaI	GTAC	2 cut(s)	130, 166
RsaNI	GTAC	2 cut(s)	129, 165
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	4 cut(s)	35, 252, 320, 420
SatI	GCNGC	2 cut(s)	198, 454
Sau3AI	GATC	1 cut(s)	299
ScaI	AGTACT	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	247
SetI	ASST	1 cut(s)	194
SfaNI	GCATC	1 cut(s)	280
SgrAI	CRCCGGYG	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	3 cut(s)	32, 139, 311
SspMI	CTAG	3 cut(s)	210, 356, 520
StyI	CCWWGG	1 cut(s)	361
TaqI	TCGA	1 cut(s)	16
TasI	AATT	3 cut(s)	32, 139, 311
TatI	WGTACW	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	4 cut(s)	35, 252, 320, 420
Tru9I	TTAA	4 cut(s)	35, 252, 320, 420
TscAI	CASTG	2 cut(s)	301, 397
TseI	GCWGC	2 cut(s)	197, 453
TspDTI	ATGAA	3 cut(s)	94, 231, 512
TspGWI	ACGGA	2 cut(s)	135, 268
TspRI	CASTG	2 cut(s)	301, 397
Vha464I	CTTAAG	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	35
XagI	CCTNNNNNAGG	1 cut(s)	251
XceI	RCATGY	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	3 cut(s)	210, 356, 520
ZrmI	AGTACT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.