Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

47409171 .. 47410315

Gene Structure 1145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG223600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGAGTTCACCAACCAAAGCAAATGCATCTGTTTGGTTTTGGTCCTCATGTCGGGGCTTTGGTCTTCAGAAGCCACTTCTCGCAGTCTCCAAGATGCATTAGCTTATGGGAGGTACGAGCAATGGGTGGCTCGTTATGGACGTGTATATAATGATGTCATTGAGAAGGAGAAGCGCTTCAAGATATTCAAGGAGAATGAGGCATTTATAGAATCTTCCAATAATGAAGGAAATAAGCTTTACAAATTGGGTTTGAATCAATATGCAGACCTTACAAATGATGAATTCATAGCCTCGAGAAATCGATTCAAGGGGCATGAATGTTCCACAAAGACCACTACTTTCAAATATGAAAATGCTACTGTGCCGGCGACAATGGACTGGAGACAGAAGGGAGCTGTAACTCCTGTCAAGGACCAAGGCCAATGTGGATATTGTTGGGCATTCTCAGCAGTTGCAGCCATGGAAGGAATTACTCAGCTTACAACTGGTAAACTAATATCTTTGTCTGAGCAAGAGCTGGTTGACTGTGATGTCAATGGTGAAGACCAAGGTTGTGAGGGTGGCTTGATGGACAATGCATTTGAGTTCATCAATCAAAATCATGGACTTAGCACGGAGGCTAACTATCCCTACACGGGGGAAGATGGTACATGCGATGCTAAGAAGGAAGCAAGCCATGCAGCCTCAATTACTGGCCATGAAGATGTGCCTCCCAACAACGAAAGTGCCCTTCTCAAGGCCGTTGCTAATCAACCTATTTCTGTTGCCATTGATGCTAGCGGATCTGACTTCCAGTTCTATACGAGTGGTGTTTTCACAGGACCATGTGGAACAAGCCTAGACCATGGTGTTACTGCTGTTGGTTATGGTGTCAGTGATAATGGGACTAAGTATTGGTTGGTGAAGAACTCATGGGGTGCACAATGGGGTGAAGAAGGTTACATAAGAATGCAAAGAGATGTGCCTGCACCGGAAGGTCTTTGTGGCATTGCCATGGAACCCTCATACCCAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

340

Amino Acids

37.31

Weight (kDa)

4.74

Isoelectric Point (pI)

26.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	39 - 96	1.3e-17	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 339	4.1e-84	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	533
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	1 cut(s)	793
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	51
AfaI	GTAC	2 cut(s)	116, 652
AfeI	AGCGCT	1 cut(s)	176
AfiI	CCNNNNNNNGG	4 cut(s)	52, 638, 639, 739
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	5 cut(s)	181, 190, 256, 310, 346
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	5 cut(s)	104, 238, 398, 481, 520
AluI	AGCT	5 cut(s)	104, 238, 398, 481, 520
Alw21I	GWGCWC	1 cut(s)	925
Alw26I	GTCTC	2 cut(s)	92, 379
Alw44I	GTGCAC	1 cut(s)	921
AlwI	GGATC	1 cut(s)	793
Ama87I	CYCGRG	1 cut(s)	295
Aor51HI	AGCGCT	1 cut(s)	176
AoxI	GGCC	3 cut(s)	421, 697, 741
ApaLI	GTGCAC	1 cut(s)	921
ApeKI	GCWGC	2 cut(s)	458, 683
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	566, 598
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	3 cut(s)	43, 415, 824
AsuHPI	GGTGA	3 cut(s)	554, 916, 944
AsuNHI	GCTAGC	1 cut(s)	779
AvaI	CYCGRG	1 cut(s)	295
AvaII	GGWCC	3 cut(s)	43, 415, 824
BaeGI	GKGCMC	2 cut(s)	733, 925
BalI	TGGCCA	1 cut(s)	699
BbsI	GAAGAC	2 cut(s)	57, 552
Bbv12I	GWGCWC	1 cut(s)	925
BbvI	GCAGC	2 cut(s)	470, 695
BccI	CCATC	2 cut(s)	565, 641
BceAI	ACGGC	1 cut(s)	728
BcoDI	GTCTC	2 cut(s)	92, 379
BfaI	CTAG	2 cut(s)	780, 842
BfoI	RGCGCY	1 cut(s)	178
BisI	GCNGC	2 cut(s)	459, 684
BlsI	GCNGC	2 cut(s)	460, 685
Bme18I	GGWCC	3 cut(s)	43, 415, 824
BmeT110I	CYCGRG	1 cut(s)	295
BmgBI	CACGTC	1 cut(s)	143
BmgT120I	GGNCC	3 cut(s)	43, 415, 824
BmiI	GGNNCC	1 cut(s)	1002
BmsI	GCATC	4 cut(s)	36, 85, 649, 766
BmtI	GCTAGC	1 cut(s)	783
BpiI	GAAGAC	2 cut(s)	57, 552
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	1 cut(s)	722
Bsa29I	ATCGAT	1 cut(s)	304
BsaJI	CCNNGG	5 cut(s)	418, 462, 550, 847, 996
BsaWI	WCCGGW	1 cut(s)	973
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 638, 639, 739
Bse118I	RCCGGY	1 cut(s)	367
Bse1I	ACTGG	4 cut(s)	386, 493, 700, 796
Bse3DI	GCAATG	2 cut(s)	128, 990
BseCI	ATCGAT	1 cut(s)	304
BseDI	CCNNGG	5 cut(s)	418, 462, 550, 847, 996
BseLI	CCNNNNNNNGG	4 cut(s)	52, 638, 639, 739
BseMI	GCAATG	2 cut(s)	128, 990
BseMII	CTCAG	3 cut(s)	462, 491, 501
BseNI	ACTGG	4 cut(s)	386, 493, 700, 796
BseSI	GKGCMC	2 cut(s)	733, 925
BseXI	GCAGC	2 cut(s)	470, 695
BsgI	GTGCAG	1 cut(s)	954
BshFI	GGCC	3 cut(s)	423, 699, 743
BshVI	ATCGAT	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	925
BsiHKCI	CYCGRG	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	368, 974
BslFI	GGGAC	1 cut(s)	901
BslI	CCNNNNNNNGG	4 cut(s)	52, 638, 639, 739
BsmAI	GTCTC	2 cut(s)	92, 379
BsmFI	GGGAC	1 cut(s)	901
BsmI	GAATGC	2 cut(s)	443, 957
BsnI	GGCC	3 cut(s)	423, 699, 743
BsoBI	CYCGRG	1 cut(s)	295
Bsp1286I	GDGCHC	2 cut(s)	733, 925
Bsp143I	GATC	1 cut(s)	785
Bsp19I	CCATGG	3 cut(s)	462, 847, 996
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	3 cut(s)	423, 699, 743
BspCNI	CTCAG	3 cut(s)	461, 490, 502
BspDI	ATCGAT	1 cut(s)	304
BspLI	GGNNCC	1 cut(s)	1002
BspOI	GCTAGC	1 cut(s)	783
BspPI	GGATC	1 cut(s)	793
BsrDI	GCAATG	2 cut(s)	128, 990
BsrFI	RCCGGY	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	386, 493, 700, 796
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	5 cut(s)	418, 462, 550, 847, 996
BssMI	GATC	1 cut(s)	785
BssT1I	CCWWGG	5 cut(s)	418, 462, 550, 847, 996
Bst4CI	ACNGT	2 cut(s)	364, 530
BstAPI	GCANNNNNTGC	1 cut(s)	680
BstC8I	GCNNGC	4 cut(s)	369, 676, 781, 969
BstDEI	CTNAG	6 cut(s)	448, 477, 510, 611, 663, 891
BstDSI	CCRYGG	3 cut(s)	462, 847, 996
BstENI	CCTNNNNNAGG	1 cut(s)	737
BstH2I	RGCGCY	1 cut(s)	178
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	1 cut(s)	788
BstMAI	GTCTC	2 cut(s)	92, 379
BstMBI	GATC	1 cut(s)	785
BstMWI	GCNNNNNNNGC	4 cut(s)	449, 458, 680, 776
BstNSI	RCATGY	1 cut(s)	657
BstSLI	GKGCMC	2 cut(s)	733, 925
BstV1I	GCAGC	2 cut(s)	470, 695
BstV2I	GAAGAC	2 cut(s)	57, 552
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
Bsu15I	ATCGAT	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	423, 699, 743
BsuTUI	ATCGAT	1 cut(s)	304
BtgI	CCRYGG	3 cut(s)	462, 847, 996
BtgZI	GCGATG	1 cut(s)	672
BtrI	CACGTC	1 cut(s)	143
BtsIMutI	CAGTG	1 cut(s)	883
Cac8I	GCNNGC	4 cut(s)	369, 676, 781, 969
CfoI	GCGC	1 cut(s)	177
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	3 cut(s)	43, 415, 824
ClaI	ATCGAT	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	115, 651
CviQI	GTAC	2 cut(s)	115, 651
DdeI	CTNAG	6 cut(s)	448, 477, 510, 611, 663, 891
DpnI	GATC	1 cut(s)	787
DpnII	GATC	1 cut(s)	785
DrdI	GACNNNNNNGTC	1 cut(s)	533
DseDI	GACNNNNNNGTC	1 cut(s)	533
EaeI	YGGCCR	1 cut(s)	697
Eco130I	CCWWGG	5 cut(s)	418, 462, 550, 847, 996
Eco47I	GGWCC	3 cut(s)	43, 415, 824
Eco47III	AGCGCT	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	295
EcoNI	CCTNNNNNAGG	1 cut(s)	737
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	5 cut(s)	418, 462, 550, 847, 996
EcoT22I	ATGCAT	3 cut(s)	29, 100, 583
ErhI	CCWWGG	5 cut(s)	418, 462, 550, 847, 996
FaqI	GGGAC	1 cut(s)	901
Fnu4HI	GCNGC	2 cut(s)	459, 684
Fsp4HI	GCNGC	2 cut(s)	459, 684
FspBI	CTAG	2 cut(s)	780, 842
GlaI	GCGC	1 cut(s)	176
GluI	GCNGC	2 cut(s)	459, 684
GsuI	CTGGAG	1 cut(s)	403
HaeII	RGCGCY	1 cut(s)	178
HaeIII	GGCC	3 cut(s)	423, 699, 743
HapII	CCGG	2 cut(s)	368, 974
HhaI	GCGC	1 cut(s)	177
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	3 cut(s)	212, 256, 306
HpaII	CCGG	2 cut(s)	368, 974
HphI	GGTGA	3 cut(s)	554, 916, 944
Hpy166II	GTNNAC	4 cut(s)	9, 494, 526, 923
Hpy188I	TCNGA	3 cut(s)	70, 511, 790
Hpy188III	TCNNGA	2 cut(s)	181, 297
Hpy8I	GTNNAC	4 cut(s)	9, 494, 526, 923
HpyAV	CCTTC	8 cut(s)	160, 221, 385, 461, 661, 743, 932, 971
HpyCH4III	ACNGT	2 cut(s)	364, 530
HpyCH4IV	ACGT	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	449, 458, 680, 776
HpyF3I	CTNAG	6 cut(s)	448, 477, 510, 611, 663, 891
HpySE526I	ACGT	1 cut(s)	142
HspAI	GCGC	1 cut(s)	175
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Kzo9I	GATC	1 cut(s)	785
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	2 cut(s)	470, 695
LweI	GCATC	4 cut(s)	36, 85, 649, 766
MaeI	CTAG	2 cut(s)	780, 842
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	3 cut(s)	400, 853, 941
MalI	GATC	1 cut(s)	787
MboI	GATC	1 cut(s)	785
MboII	GAAGA	7 cut(s)	57, 207, 557, 656, 716, 919, 947
MflI	RGATCY	1 cut(s)	785
MhlI	GDGCHC	2 cut(s)	733, 925
MlsI	TGGCCA	1 cut(s)	699
MluCI	AATT	4 cut(s)	245, 284, 471, 690
MluNI	TGGCCA	1 cut(s)	699
MnlI	CCTC	9 cut(s)	56, 105, 193, 304, 553, 613, 697, 723, 1015
Mox20I	TGGCCA	1 cut(s)	699
Mph1103I	ATGCAT	3 cut(s)	29, 100, 583
MroNI	GCCGGC	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	699
MslI	CAYNNNNRTG	3 cut(s)	705, 950, 995
Msp20I	TGGCCA	1 cut(s)	699
MspI	CCGG	2 cut(s)	368, 974
Mva1269I	GAATGC	2 cut(s)	443, 957
MwoI	GCNNNNNNNGC	4 cut(s)	449, 458, 680, 776
NaeI	GCCGGC	1 cut(s)	369
NcoI	CCATGG	3 cut(s)	462, 847, 996
NdeII	GATC	1 cut(s)	785
NgoMIV	GCCGGC	1 cut(s)	367
NheI	GCTAGC	1 cut(s)	779
NlaIV	GGNNCC	1 cut(s)	1002
NsiI	ATGCAT	3 cut(s)	29, 100, 583
NspI	RCATGY	1 cut(s)	657
PaeR7I	CTCGAG	1 cut(s)	295
PcsI	WCGNNNNNNNCGW	1 cut(s)	139
PctI	GAATGC	2 cut(s)	443, 957
PdiI	GCCGGC	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	212, 256, 306
PkrI	GCNGC	2 cut(s)	460, 685
PspN4I	GGNNCC	1 cut(s)	1002
PspPI	GGNCC	3 cut(s)	43, 415, 824
PsuI	RGATCY	1 cut(s)	785
RsaI	GTAC	2 cut(s)	116, 652
RsaNI	GTAC	2 cut(s)	115, 651
RseI	CAYNNNNRTG	3 cut(s)	705, 950, 995
SatI	GCNGC	2 cut(s)	459, 684
Sau3AI	GATC	1 cut(s)	785
Sau96I	GGNCC	3 cut(s)	43, 415, 824
SduI	GDGCHC	2 cut(s)	733, 925
SfaNI	GCATC	4 cut(s)	36, 85, 649, 766
Sfr274I	CTCGAG	1 cut(s)	295
SinI	GGWCC	3 cut(s)	43, 415, 824
SlaI	CTCGAG	1 cut(s)	295
SmiMI	CAYNNNNRTG	3 cut(s)	705, 950, 995
SmlI	CTYRAG	2 cut(s)	295, 737
SmoI	CTYRAG	2 cut(s)	295, 737
Sse9I	AATT	4 cut(s)	245, 284, 471, 690
SsiI	CCGC	1 cut(s)	783
SspMI	CTAG	2 cut(s)	780, 842
StyI	CCWWGG	5 cut(s)	418, 462, 550, 847, 996
TaaI	ACNGT	2 cut(s)	364, 530
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	296, 304
TasI	AATT	4 cut(s)	245, 284, 471, 690
TfiI	GAWTC	3 cut(s)	212, 256, 306
TscAI	CASTG	1 cut(s)	883
TseI	GCWGC	2 cut(s)	458, 683
TspDTI	ATGAA	7 cut(s)	240, 277, 297, 333, 366, 580, 717
TspGWI	ACGGA	1 cut(s)	632
TspRI	CASTG	1 cut(s)	883
VneI	GTGCAC	1 cut(s)	921
VpaK11BI	GGWCC	3 cut(s)	43, 415, 824
XagI	CCTNNNNNAGG	1 cut(s)	737
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	657
XcmI	CCANNNNNNNNNTGG	1 cut(s)	425
XhoI	CTCGAG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	2 cut(s)	780, 842
Zsp2I	ATGCAT	3 cut(s)	29, 100, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.