Rmu_sc0003479.1_g000001

Belongs to the peptidase C1 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003479.1
Physical Location & Seq
Forward (+)
1710 .. 2830
1121 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003479.1_g000001.1.cds

Sequence Viewer

Length: 993 bp
atgtgcttgatcctcatattcggggcttggtcttctgaagccacctctcggaatcttgaagatgcagccatgtatgagagatacgagcaatggatgactcgttatggacgccaatacagcagcatgaatgagaaggagactcgcttcaatgtattcaagaaaaatgtggcaatgattgattcttcgaatagcgatgtaaacaaaccatacaaattgagcgtcaatcaatttgcagaccttacaactgaagaattcaaatcccaaaggactggattcaagggtcttcgggatacccctccgccgactacttctttcaagtacgaaaatgttagcatagtgccatcttcaatagactggagaacgaaaggagctgtaatgcctgtcaaggatcaaggccaatgtggaagctgttgggctttcgcaacagtgggagccttggaaggagctcttcagcttgctactggtgaactagtctctatgtccgagcaagagttggttgactgtaacgtcggaggtgagaatgaaggctgtatgggtggctaccccgacgttgcctttctgtacatcatagaaaagcacgggcttacaaacgaggctaattatccctatactgctactgataatatgtgcaatactaaagaggcagacagcccttcaggtagcataaccggctacgaagatgtgcctgtaaacagtgaacaggaccttctcaaggctgttgctaatcaacctgtatccgtttgcattcaagctgagggagcattcgaatactattcatctggtgtgttgacaggagattgtggaacggacctcgaccattgtgttaccgctattggttacggaacaactgatgaggggatcgattattggttgctgaaaaactcatggggcacagaatggggtgaagaaggctacgttaggattcaaagaaatatagaggctgtggaaggaatgtgtggcattgctacgtcagcctcttatgctactgtgtag

Protein Analysis

330

Amino Acids

36.27

Weight (kDa)

4.42

Isoelectric Point (pI)

32.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000141)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22160
fragaria_vesca FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 506
AciI CCGC 2 cut(s) 299, 828
AclWI GGATC 3 cut(s) 4, 396, 866
AcsI RAATTY 1 cut(s) 251
AcuI CTGAAG 4 cut(s) 57, 267, 434, 639
AcyI GRCGYC 1 cut(s) 109
AfaI GTAC 2 cut(s) 320, 563
AfiI CCNNNNNNNGG 2 cut(s) 48, 712
AgsI TTSAA 9 cut(s) 59, 148, 157, 256, 277, 316, 348, 749, 926
AhlI ACTAGT 1 cut(s) 469
AluBI AGCT 5 cut(s) 371, 408, 446, 454, 752
AluI AGCT 5 cut(s) 371, 408, 446, 454, 752
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 2 cut(s) 131, 478
AlwI GGATC 3 cut(s) 4, 396, 866
AoxI GGCC 1 cut(s) 394
ApeKI GCWGC 2 cut(s) 65, 120
ApoI RAATTY 1 cut(s) 251
ArsI GACNNNNNNTTYG 2 cut(s) 204, 236
AspS9I GGNCC 2 cut(s) 703, 808
AsuHPI GGTGA 3 cut(s) 476, 527, 914
AsuII TTCGAA 2 cut(s) 185, 765
AvaII GGWCC 2 cut(s) 703, 808
BaeGI GKGCMC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 2 cut(s) 24, 275
Bbv12I GWGCWC 1 cut(s) 448
BbvCI CCTCAGC 1 cut(s) 753
BbvI GCAGC 2 cut(s) 77, 132
BccI CCATC 1 cut(s) 349
BciVI GTATCC 2 cut(s) 283, 745
BcoDI GTCTC 2 cut(s) 131, 478
BcuI ACTAGT 1 cut(s) 469
BfaI CTAG 1 cut(s) 470
BfuI GTATCC 2 cut(s) 283, 745
BisI GCNGC 2 cut(s) 66, 121
BlsI GCNGC 2 cut(s) 67, 122
Bme18I GGWCC 2 cut(s) 703, 808
BmgT120I GGNCC 2 cut(s) 703, 808
BmiI GGNNCC 1 cut(s) 433
BmsI GCATC 1 cut(s) 52
BpiI GAAGAC 2 cut(s) 24, 275
BpmI CTGGAG 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 753
Bpu14I TTCGAA 2 cut(s) 185, 765
BpuEI CTTGAG 1 cut(s) 695
Bsa29I ATCGAT 1 cut(s) 861
BsaHI GRCGYC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 435
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 712
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 3 cut(s) 274, 359, 466
Bse3DI GCAATG 3 cut(s) 95, 177, 960
BseCI ATCGAT 1 cut(s) 861
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 2 cut(s) 48, 712
BseMI GCAATG 3 cut(s) 95, 177, 960
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 3 cut(s) 274, 359, 466
BseSI GKGCMC 1 cut(s) 893
BseXI GCAGC 2 cut(s) 77, 132
BshFI GGCC 1 cut(s) 396
BshVI ATCGAT 1 cut(s) 861
BsiHKAI GWGCWC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 48, 712
BsmAI GTCTC 2 cut(s) 131, 478
BsmI GAATGC 2 cut(s) 744, 761
BsnI GGCC 1 cut(s) 396
Bsp119I TTCGAA 2 cut(s) 185, 765
Bsp1286I GDGCHC 2 cut(s) 448, 893
Bsp1407I TGTACA 1 cut(s) 561
Bsp143I GATC 3 cut(s) 9, 388, 858
BspACI CCGC 2 cut(s) 299, 828
BspANI GGCC 1 cut(s) 396
BspCNI CTCAG 1 cut(s) 745
BspDI ATCGAT 1 cut(s) 861
BspLI GGNNCC 1 cut(s) 433
BspPI GGATC 3 cut(s) 4, 396, 866
BspQI GCTCTTC 1 cut(s) 453
BspT104I TTCGAA 2 cut(s) 185, 765
BsrDI GCAATG 3 cut(s) 95, 177, 960
BsrFI RCCGGY 1 cut(s) 668
BsrGI TGTACA 1 cut(s) 561
BsrI ACTGG 3 cut(s) 274, 359, 466
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 3 cut(s) 9, 388, 858
BssNI GRCGYC 1 cut(s) 109
BssT1I CCWWGG 1 cut(s) 435
Bst4CI ACNGT 4 cut(s) 427, 503, 695, 988
Bst6I CTCTTC 1 cut(s) 453
BstACI GRCGYC 1 cut(s) 109
BstAUI TGTACA 1 cut(s) 561
BstBI TTCGAA 2 cut(s) 185, 765
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 1 cut(s) 753
BstENI CCTNNNNNAGG 1 cut(s) 710
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 3 cut(s) 12, 391, 861
BstMAI GTCTC 2 cut(s) 131, 478
BstMBI GATC 3 cut(s) 9, 388, 858
BstMWI GCNNNNNNNGC 5 cut(s) 117, 669, 758, 971, 980
BstSLI GKGCMC 1 cut(s) 893
BstV1I GCAGC 2 cut(s) 77, 132
BstV2I GAAGAC 2 cut(s) 24, 275
BstXI CCANNNNNNTGG 1 cut(s) 269
Bsu15I ATCGAT 1 cut(s) 861
BsuI GTATCC 2 cut(s) 283, 745
BsuRI GGCC 1 cut(s) 396
BsuTUI ATCGAT 1 cut(s) 861
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 432, 700
Cac8I GCNNGC 1 cut(s) 456
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 2 cut(s) 703, 808
ClaI ATCGAT 1 cut(s) 861
CseI GACGC 2 cut(s) 117, 208
Csp6I GTAC 2 cut(s) 319, 562
CviAII CATG 3 cut(s) 70, 124, 885
CviQI GTAC 2 cut(s) 319, 562
DdeI CTNAG 1 cut(s) 753
DpnI GATC 3 cut(s) 11, 390, 860
DpnII GATC 3 cut(s) 9, 388, 858
DrdI GACNNNNNNGTC 1 cut(s) 506
DseDI GACNNNNNNGTC 1 cut(s) 506
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EciI GGCGGA 1 cut(s) 288
Ecl136II GAGCTC 1 cut(s) 446
Eco130I CCWWGG 1 cut(s) 435
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 703, 808
Eco53kI GAGCTC 1 cut(s) 446
Eco57I CTGAAG 4 cut(s) 57, 267, 434, 639
EcoICRI GAGCTC 1 cut(s) 446
EcoNI CCTNNNNNAGG 1 cut(s) 710
EcoO109I RGGNCCY 1 cut(s) 703
EcoRI GAATTC 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 3 cut(s) 73, 127, 888
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FatI CATG 3 cut(s) 69, 123, 884
Fnu4HI GCNGC 2 cut(s) 66, 121
FokI GGATG 1 cut(s) 106
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 66, 121
FspBI CTAG 1 cut(s) 470
GluI GCNGC 2 cut(s) 66, 121
GsuI CTGGAG 1 cut(s) 376
HaeIII GGCC 1 cut(s) 396
HapII CCGG 1 cut(s) 669
HgaI GACGC 2 cut(s) 117, 208
Hin1I GRCGYC 1 cut(s) 109
Hin1II CATG 3 cut(s) 73, 127, 888
HincII GTYRAC 2 cut(s) 499, 789
HindII GTYRAC 2 cut(s) 499, 789
HinfI GANTC 6 cut(s) 52, 97, 139, 179, 273, 922
HpaII CCGG 1 cut(s) 669
HphI GGTGA 3 cut(s) 476, 527, 914
Hpy166II GTNNAC 6 cut(s) 199, 467, 499, 691, 698, 789
Hpy188I TCNGA 4 cut(s) 37, 51, 484, 512
Hpy188III TCNNGA 3 cut(s) 56, 157, 287
Hpy8I GTNNAC 6 cut(s) 199, 467, 499, 691, 698, 789
Hpy99I CGWCG 2 cut(s) 512, 551
HpyAV CCTTC 7 cut(s) 127, 434, 518, 663, 716, 902, 941
HpyCH4III ACNGT 4 cut(s) 427, 503, 695, 988
HpyCH4IV ACGT 4 cut(s) 507, 549, 915, 968
HpyCH4V TGCA 4 cut(s) 65, 233, 630, 744
HpyF10VI GCNNNNNNNGC 5 cut(s) 117, 669, 758, 971, 980
HpyF3I CTNAG 1 cut(s) 753
HpySE526I ACGT 4 cut(s) 507, 549, 915, 968
Hsp92I GRCGYC 1 cut(s) 109
Hsp92II CATG 3 cut(s) 73, 127, 888
Kzo9I GATC 3 cut(s) 9, 388, 858
LguI GCTCTTC 1 cut(s) 453
LmnI GCTCC 4 cut(s) 368, 431, 443, 758
Lsp1109I GCAGC 2 cut(s) 77, 132
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 470
MaeII ACGT 4 cut(s) 507, 549, 915, 968
MaeIII GTNAC 3 cut(s) 503, 823, 836
MalI GATC 3 cut(s) 11, 390, 860
MboI GATC 3 cut(s) 9, 388, 858
MboII GAAGA 9 cut(s) 24, 71, 174, 260, 275, 336, 440, 689, 917
MhlI GDGCHC 2 cut(s) 448, 893
MluCI AATT 4 cut(s) 212, 227, 251, 598
MlyI GAGTC 2 cut(s) 91, 133
MmeI TCCRAC 1 cut(s) 490
MspI CCGG 1 cut(s) 669
Mva1269I GAATGC 2 cut(s) 744, 761
MwoI GCNNNNNNNGC 5 cut(s) 117, 669, 758, 971, 980
NdeII GATC 3 cut(s) 9, 388, 858
NlaIII CATG 3 cut(s) 73, 127, 888
NlaIV GGNNCC 1 cut(s) 433
NspV TTCGAA 2 cut(s) 185, 765
PciSI GCTCTTC 1 cut(s) 453
PctI GAATGC 2 cut(s) 744, 761
PfeI GAWTC 4 cut(s) 52, 179, 273, 922
PkrI GCNGC 2 cut(s) 67, 122
PleI GAGTC 2 cut(s) 91, 133
PpsI GAGTC 2 cut(s) 91, 133
PpuMI RGGWCCY 1 cut(s) 703
Psp124BI GAGCTC 1 cut(s) 448
Psp5II RGGWCCY 1 cut(s) 703
PspN4I GGNNCC 1 cut(s) 433
PspPI GGNCC 2 cut(s) 703, 808
PspPPI RGGWCCY 1 cut(s) 703
RsaI GTAC 2 cut(s) 320, 563
RsaNI GTAC 2 cut(s) 319, 562
SacI GAGCTC 1 cut(s) 448
SapI GCTCTTC 1 cut(s) 453
SatI GCNGC 2 cut(s) 66, 121
Sau3AI GATC 3 cut(s) 9, 388, 858
Sau96I GGNCC 2 cut(s) 703, 808
SchI GAGTC 2 cut(s) 91, 133
SduI GDGCHC 2 cut(s) 448, 893
SfaNI GCATC 1 cut(s) 52
SfuI TTCGAA 2 cut(s) 185, 765
SinI GGWCC 2 cut(s) 703, 808
SmlI CTYRAG 1 cut(s) 710
SmoI CTYRAG 1 cut(s) 710
SpeI ACTAGT 1 cut(s) 469
Sse9I AATT 4 cut(s) 212, 227, 251, 598
SsiI CCGC 2 cut(s) 299, 828
SspMI CTAG 1 cut(s) 470
SstI GAGCTC 1 cut(s) 448
StyI CCWWGG 1 cut(s) 435
TaaI ACNGT 4 cut(s) 427, 503, 695, 988
TaiI ACGT 4 cut(s) 510, 552, 918, 971
TaqI TCGA 4 cut(s) 185, 765, 813, 861
TasI AATT 4 cut(s) 212, 227, 251, 598
TatI WGTACW 1 cut(s) 561
TfiI GAWTC 4 cut(s) 52, 179, 273, 922
TscAI CASTG 2 cut(s) 432, 700
TseI GCWGC 2 cut(s) 65, 120
TspDTI ATGAA 3 cut(s) 140, 537, 765
TspGWI ACGGA 3 cut(s) 727, 821, 855
TspRI CASTG 2 cut(s) 432, 700
VpaK11BI GGWCC 2 cut(s) 703, 808
XagI CCTNNNNNAGG 1 cut(s) 710
XapI RAATTY 1 cut(s) 251
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.