Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Forward (+)

33233512 .. 33234722

Gene Structure 1211 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0230200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTTAACAGAAGCAGTTGCTTCAGATCAAGCACTCTTCTATGCATCGTAGTACTGCTTTTAATACTACACTTGAATCCTTCTATTGGATATGGATGCATTGAGAGGGAAAGGCAAGCACTTCTTGCATTCAAAAAAGACACTGTGGACAACTACAATCGACTCTCTTCATGGGGATCGAGTGAAGATTGTTGTAAATGGGCAGGAGTCCGGTGCAGCAACCAGAATGGCAATGTCAATGAACTTCATCTTCAACCTGAGCCTCTGATGCGACCCTTGAAAGGTACCATTAGTTCTAAACTGATCGAGTTAGAGTTTTTGGAATACTTGGACCTCAGCTACAATAAGTTGAATCTTGACAGCATTCGAGATTTCATTGGTTCGTTGAGGAAATTAAGGTACCTCGATCTCTCTTCTAATTTTGTTAGTGGTTCATTTCCGTATCAAATTGGAAATCTTACAAACTTGGAATATCTCGATCTTGGCTACACTTACTTAACTAGAATAGAAAACTTCAACTGGCTCTCTCATCTTACTTCTTTAAGAGACTTGAAGCTGTCCGGCAGCAATCTCAGTACTGCTTTCGATTGGCTGGAAGCAGTTAATAGCATAATTGAGAATCATTCAACAAAGGAAGCAGAAGAAAATCTCACTCTCTCTCTCACTGCCGAACCCACCAAAAAACAGAGCACAAATTCTTCGATCTCTCTCTCCCACCTCAGGCCACCTCAAGACGTCAGACCACCTCCATTACCTTCGCCTCTTCCTTGCGCAGCCGTCAGTGGTAACTTTTCGTCGTCTCGTGAGCCGTACACGGCGGTGGAGCACGAGGCCAGTTTAACTTCCTTTTGTTCCAAGCTTGATATCTCAGGCTACCGGTCACCACTCATCGTCAAACTTCATCCACGAGCTCACCTCAATCTCCAGAAGCGCCCAGAAGTGTCCTTTCACGGCGGCACTACGTGTGGTGGCGGTTGGAAGCCAAACCCGATCAAAAAAAATCGAAACCGAGCTATCAACCCGGATATCTCGAGTTACAGACCACCTTTTCCTGTGACTCTTGGCCTGGTGAGTTCGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

360

Amino Acids

40.26

Weight (kDa)

8.65

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	36 - 73	9.5e-13	Leucine rich repeat N-terminal domain
LRR_14	PF23598	98 - 189	3.8e-09	Leucine-rich repeat region
LRR_8	PF13855	130 - 191	1.6e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	738
Acc16I	TGCGCA	1 cut(s)	772
Acc65I	GGTACC	2 cut(s)	284, 399
AccB1I	GGYRCC	2 cut(s)	284, 399
AciI	CCGC	3 cut(s)	818, 954, 972
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	1 cut(s)	694
AcuI	CTGAAG	1 cut(s)	7
AcyI	GRCGYC	1 cut(s)	735
AdeI	CACNNNGTG	1 cut(s)	963
AfaI	GTAC	5 cut(s)	54, 286, 401, 577, 812
AfiI	CCNNNNNNNGG	3 cut(s)	86, 281, 720
AflIII	ACRYGT	1 cut(s)	962
AgeI	ACCGGT	1 cut(s)	876
AgsI	TTSAA	8 cut(s)	76, 133, 254, 280, 352, 517, 553, 627
AjnI	CCWGG	1 cut(s)	1065
AleI	CACNNNNGTG	1 cut(s)	818
AluBI	AGCT	5 cut(s)	339, 556, 859, 911, 1013
AluI	AGCT	5 cut(s)	339, 556, 859, 911, 1013
Alw21I	GWGCWC	3 cut(s)	692, 828, 913
Alw26I	GTCTC	2 cut(s)	540, 804
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	1030
AoxI	GGCC	3 cut(s)	722, 831, 1063
ApeKI	GCWGC	3 cut(s)	216, 564, 773
ApoI	RAATTY	1 cut(s)	694
AsiGI	ACCGGT	1 cut(s)	876
Asp718I	GGTACC	2 cut(s)	284, 399
AspLEI	GCGC	2 cut(s)	773, 933
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	1022
AsuHPI	GGTGA	3 cut(s)	873, 905, 1081
AvaI	CYCGRG	1 cut(s)	1030
AvaII	GGWCC	1 cut(s)	331
AxyI	CCTNAGG	1 cut(s)	719
BanI	GGYRCC	2 cut(s)	284, 399
BanII	GRGCYC	1 cut(s)	913
BauI	CACGAG	3 cut(s)	801, 827, 906
Bbv12I	GWGCWC	3 cut(s)	692, 828, 913
BbvCI	CCTCAGC	1 cut(s)	335
BbvI	GCAGC	3 cut(s)	228, 576, 785
BceAI	ACGGC	4 cut(s)	761, 793, 831, 967
BciT130I	CCWGG	1 cut(s)	1067
BcnI	CCSGG	1 cut(s)	1022
BcoDI	GTCTC	2 cut(s)	540, 804
BfaI	CTAG	1 cut(s)	501
BfoI	RGCGCY	1 cut(s)	934
BisI	GCNGC	4 cut(s)	217, 565, 774, 955
BlsI	GCNGC	4 cut(s)	218, 566, 775, 956
BmcAI	AGTACT	2 cut(s)	54, 577
Bme1390I	CCNGG	2 cut(s)	1022, 1067
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	1030
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	2 cut(s)	286, 401
BmrFI	CCNGG	2 cut(s)	1022, 1067
BmsI	GCATC	3 cut(s)	54, 86, 258
BplI	GAGNNNNNCTC	2 cut(s)	900, 932
BpmI	CTGGAG	1 cut(s)	908
Bpu10I	CCTNAGC	2 cut(s)	258, 335
BpuEI	CTTGAG	1 cut(s)	714
BpuMI	CCSGG	1 cut(s)	1022
BsaAI	YACGTR	1 cut(s)	963
BsaHI	GRCGYC	1 cut(s)	735
BsaWI	WCCGGW	2 cut(s)	210, 876
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 281, 720
Bse118I	RCCGGY	1 cut(s)	876
Bse1I	ACTGG	2 cut(s)	524, 834
Bse21I	CCTNAGG	1 cut(s)	719
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	1067
BseGI	GGATG	2 cut(s)	101, 901
BseLI	CCNNNNNNNGG	3 cut(s)	86, 281, 720
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	5 cut(s)	249, 349, 586, 733, 882
BseNI	ACTGG	2 cut(s)	524, 834
BseXI	GCAGC	3 cut(s)	228, 576, 785
BsgI	GTGCAG	1 cut(s)	235
BshFI	GGCC	3 cut(s)	724, 833, 1065
BshNI	GGYRCC	2 cut(s)	284, 399
BshTI	ACCGGT	1 cut(s)	876
BsiHKAI	GWGCWC	3 cut(s)	692, 828, 913
BsiHKCI	CYCGRG	1 cut(s)	1030
BsiSI	CCGG	4 cut(s)	211, 561, 877, 1022
BslI	CCNNNNNNNGG	3 cut(s)	86, 281, 720
BsmAI	GTCTC	2 cut(s)	540, 804
BsmBI	CGTCTC	1 cut(s)	804
BsmI	GAATGC	2 cut(s)	128, 363
BsnI	GGCC	3 cut(s)	724, 833, 1065
BsoBI	CYCGRG	1 cut(s)	1030
Bsp1286I	GDGCHC	3 cut(s)	692, 828, 913
Bsp143I	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
BspACI	CCGC	3 cut(s)	818, 954, 972
BspANI	GGCC	3 cut(s)	724, 833, 1065
BspCNI	CTCAG	5 cut(s)	250, 348, 585, 732, 881
BspLI	GGNNCC	2 cut(s)	286, 401
BspPI	GGATC	1 cut(s)	184
BspT107I	GGYRCC	2 cut(s)	284, 399
BsrDI	GCAATG	1 cut(s)	238
BsrFI	RCCGGY	1 cut(s)	876
BsrI	ACTGG	2 cut(s)	524, 834
BssAI	RCCGGY	1 cut(s)	876
BssMI	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
BssNI	GRCGYC	1 cut(s)	735
BssSI	CACGAG	3 cut(s)	801, 827, 906
Bst2BI	CACGAG	3 cut(s)	801, 827, 906
Bst2UI	CCWGG	1 cut(s)	1067
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	4 cut(s)	42, 172, 418, 768
BstACI	GRCGYC	1 cut(s)	735
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	963
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	5 cut(s)	258, 335, 572, 719, 868
BstEII	GGTNACC	1 cut(s)	879
BstF5I	GGATG	2 cut(s)	101, 901
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	2 cut(s)	773, 933
BstKTI	GATC	7 cut(s)	29, 179, 306, 409, 481, 705, 993
BstMAI	GTCTC	2 cut(s)	540, 804
BstMBI	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 268
BstNI	CCWGG	1 cut(s)	1067
BstPI	GGTNACC	1 cut(s)	879
BstSCI	CCNGG	2 cut(s)	1020, 1065
BstV1I	GCAGC	3 cut(s)	228, 576, 785
Bsu36I	CCTNAGG	1 cut(s)	719
BsuRI	GGCC	3 cut(s)	724, 833, 1065
BtsCI	GGATG	2 cut(s)	101, 901
BtsI	GCAGTG	1 cut(s)	663
BtsIMutI	CAGTG	3 cut(s)	141, 663, 787
Cac8I	GCNNGC	1 cut(s)	117
CfoI	GCGC	2 cut(s)	773, 933
Cfr10I	RCCGGY	1 cut(s)	876
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	5 cut(s)	53, 285, 400, 576, 811
CspAI	ACCGGT	1 cut(s)	876
CviAII	CATG	1 cut(s)	171
CviQI	GTAC	5 cut(s)	53, 285, 400, 576, 811
DdeI	CTNAG	5 cut(s)	258, 335, 572, 719, 868
DpnI	GATC	7 cut(s)	28, 178, 305, 408, 480, 704, 992
DpnII	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
DraIII	CACNNNGTG	1 cut(s)	963
Eam1104I	CTCTTC	4 cut(s)	42, 172, 418, 768
EarI	CTCTTC	4 cut(s)	42, 172, 418, 768
Ecl136II	GAGCTC	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	913
Eco32I	GATATC	2 cut(s)	865, 1027
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	911
Eco57I	CTGAAG	1 cut(s)	7
Eco81I	CCTNAGG	1 cut(s)	719
Eco88I	CYCGRG	1 cut(s)	1030
Eco91I	GGTNACC	1 cut(s)	879
EcoICRI	GAGCTC	1 cut(s)	911
EcoO65I	GGTNACC	1 cut(s)	879
EcoRII	CCWGG	1 cut(s)	1065
EcoRV	GATATC	2 cut(s)	865, 1027
EcoT22I	ATGCAT	2 cut(s)	47, 101
EcoT38I	GRGCYC	1 cut(s)	913
Esp3I	CGTCTC	1 cut(s)	804
FaeI	CATG	1 cut(s)	174
FaiI	YATR	4 cut(s)	43, 93, 172, 611
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FatI	CATG	1 cut(s)	170
Fnu4HI	GCNGC	4 cut(s)	217, 565, 774, 955
FokI	GGATG	2 cut(s)	108, 888
FriOI	GRGCYC	1 cut(s)	913
Fsp4HI	GCNGC	4 cut(s)	217, 565, 774, 955
FspBI	CTAG	1 cut(s)	501
FspI	TGCGCA	1 cut(s)	772
GlaI	GCGC	2 cut(s)	772, 932
GluI	GCNGC	4 cut(s)	217, 565, 774, 955
GsuI	CTGGAG	1 cut(s)	908
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	3 cut(s)	724, 833, 1065
HapII	CCGG	4 cut(s)	211, 561, 877, 1022
HhaI	GCGC	2 cut(s)	773, 933
Hin1I	GRCGYC	1 cut(s)	735
Hin1II	CATG	1 cut(s)	174
Hin6I	GCGC	2 cut(s)	771, 931
HinP1I	GCGC	2 cut(s)	771, 931
HincII	GTYRAC	1 cut(s)	7
HindII	GTYRAC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	6 cut(s)	76, 162, 207, 352, 619, 1057
HpaI	GTTAAC	1 cut(s)	7
HpaII	CCGG	4 cut(s)	211, 561, 877, 1022
HphI	GGTGA	3 cut(s)	873, 905, 1081
Hpy166II	GTNNAC	3 cut(s)	7, 148, 813
Hpy188I	TCNGA	3 cut(s)	26, 267, 740
Hpy188III	TCNNGA	7 cut(s)	356, 368, 476, 731, 803, 925, 1030
Hpy8I	GTNNAC	3 cut(s)	7, 148, 813
Hpy99I	CGWCG	1 cut(s)	799
HpyAV	CCTTC	2 cut(s)	90, 765
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	735, 962
HpyCH4V	TGCA	4 cut(s)	45, 99, 128, 216
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 268
HpyF3I	CTNAG	5 cut(s)	258, 335, 572, 719, 868
HpySE526I	ACGT	2 cut(s)	735, 962
Hsp92I	GRCGYC	1 cut(s)	735
Hsp92II	CATG	1 cut(s)	174
HspAI	GCGC	2 cut(s)	771, 931
KpnI	GGTACC	2 cut(s)	288, 403
KspAI	GTTAAC	1 cut(s)	7
Kzo9I	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	3 cut(s)	228, 576, 785
LweI	GCATC	3 cut(s)	54, 86, 258
MaeI	CTAG	1 cut(s)	501
MaeII	ACGT	2 cut(s)	735, 962
MaeIII	GTNAC	4 cut(s)	785, 879, 1034, 1054
MalI	GATC	7 cut(s)	28, 178, 305, 408, 480, 704, 992
MboI	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
MboII	GAAGA	8 cut(s)	29, 159, 197, 242, 405, 653, 690, 755
MhlI	GDGCHC	3 cut(s)	692, 828, 913
MluCI	AATT	5 cut(s)	392, 418, 447, 612, 694
MlyI	GAGTC	3 cut(s)	156, 216, 1051
MmeI	TCCRAC	1 cut(s)	956
Mph1103I	ATGCAT	2 cut(s)	47, 101
MseI	TTAA	7 cut(s)	6, 62, 395, 497, 542, 603, 839
MslI	CAYNNNNRTG	1 cut(s)	818
MspI	CCGG	4 cut(s)	211, 561, 877, 1022
MspR9I	CCNGG	2 cut(s)	1022, 1067
Mva1269I	GAATGC	2 cut(s)	128, 363
MvaI	CCWGG	1 cut(s)	1067
MwoI	GCNNNNNNNGC	2 cut(s)	125, 268
NciI	CCSGG	1 cut(s)	1022
NdeII	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
NlaIII	CATG	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	286, 401
NmuCI	GTSAC	2 cut(s)	879, 1054
NsbI	TGCGCA	1 cut(s)	772
NsiI	ATGCAT	2 cut(s)	47, 101
OliI	CACNNNNGTG	1 cut(s)	818
PaeR7I	CTCGAG	1 cut(s)	1030
PctI	GAATGC	2 cut(s)	128, 363
PfeI	GAWTC	3 cut(s)	76, 352, 619
PinAI	ACCGGT	1 cut(s)	876
PkrI	GCNGC	4 cut(s)	218, 566, 775, 956
PleI	GAGTC	3 cut(s)	156, 215, 1051
PpsI	GAGTC	3 cut(s)	156, 215, 1051
Ppu21I	YACGTR	1 cut(s)	963
Psp124BI	GAGCTC	1 cut(s)	913
Psp6I	CCWGG	1 cut(s)	1065
PspEI	GGTNACC	1 cut(s)	879
PspGI	CCWGG	1 cut(s)	1065
PspN4I	GGNNCC	2 cut(s)	286, 401
PspPI	GGNCC	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	277, 309
RsaI	GTAC	5 cut(s)	54, 286, 401, 577, 812
RsaNI	GTAC	5 cut(s)	53, 285, 400, 576, 811
RseI	CAYNNNNRTG	1 cut(s)	818
SacI	GAGCTC	1 cut(s)	913
SaqAI	TTAA	7 cut(s)	6, 62, 395, 497, 542, 603, 839
SatI	GCNGC	4 cut(s)	217, 565, 774, 955
Sau3AI	GATC	7 cut(s)	26, 176, 303, 406, 478, 702, 990
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	2 cut(s)	54, 577
SchI	GAGTC	3 cut(s)	156, 216, 1051
ScrFI	CCNGG	2 cut(s)	1022, 1067
SduI	GDGCHC	3 cut(s)	692, 828, 913
SfaNI	GCATC	3 cut(s)	54, 86, 258
Sfr274I	CTCGAG	1 cut(s)	1030
SinI	GGWCC	1 cut(s)	331
SlaI	CTCGAG	1 cut(s)	1030
SmiMI	CAYNNNNRTG	1 cut(s)	818
SmlI	CTYRAG	2 cut(s)	729, 1030
SmoI	CTYRAG	2 cut(s)	729, 1030
Sse9I	AATT	5 cut(s)	392, 418, 447, 612, 694
SsiI	CCGC	3 cut(s)	818, 954, 972
SspMI	CTAG	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	913
StyD4I	CCNGG	2 cut(s)	1020, 1065
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	738, 965
TasI	AATT	5 cut(s)	392, 418, 447, 612, 694
TatI	WGTACW	2 cut(s)	52, 575
TauI	GCSGC	1 cut(s)	957
TfiI	GAWTC	3 cut(s)	76, 352, 619
Tru1I	TTAA	7 cut(s)	6, 62, 395, 497, 542, 603, 839
Tru9I	TTAA	7 cut(s)	6, 62, 395, 497, 542, 603, 839
TscAI	CASTG	3 cut(s)	148, 670, 787
TseFI	GTSAC	2 cut(s)	879, 1054
TseI	GCWGC	3 cut(s)	216, 564, 773
Tsp45I	GTSAC	2 cut(s)	879, 1054
TspDTI	ATGAA	6 cut(s)	159, 236, 255, 364, 423, 890
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	3 cut(s)	148, 670, 787
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	694
XhoI	CTCGAG	1 cut(s)	1030
XspI	CTAG	1 cut(s)	501
ZraI	GACGTC	1 cut(s)	736
ZrmI	AGTACT	2 cut(s)	54, 577
Zsp2I	ATGCAT	2 cut(s)	47, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.