Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

48307200 .. 48309639

Gene Structure 2440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTTTGGCACGTTTGGCTTTGAAGAAGCACTTTCACCAGAGGGTGCTTTCTCCATCTTCTTCTTTCTCTGCTGCTAACTCTGTGTTATTGGGTCGTGGTGGTAGTGAGAGGAGGTTGCTTGCTACAGACGCTGGTGATAAGGTGACTCCTGAGAAAACAACCGACGACAAAGATCTTAGCATCTCGGAGGCTAAAGGTAGATGGACCAACTTGTTCCCTAACTGGAGCCGCAGTAGGGGATTATGGAGCAATAAGGATCGAGACTTTGTTCCTGCCCTTTCTGGCCTTGAAAGAGCATTGTTACAAGCAACCGGGAACATAAGTAGGCTGTTTGAGAACCTAAACATATCACCATGGTCAGTATCCGGGCGTGTCAAAGAGCAAGACGACTGTTACAAATTGCGGTTTGACATGCCGGGACTTACCAAGGAGGATGTGAAGATTAGTGTTCATCACGGAGTTCTGACAATCAAGGGGGAGCACAAGGACGAAGAGGGAGAAGAGACGGAGGACGAATTTTGGTCATCAAGGAGTTATGGTTATTATCACACTAGTTTCGCGTTGCCTGATGATGCTAAAGTTGATGAGATAAAGGCATCGTTGAGGGATGGGGTGCTGTCTGTTACCATTCCTAGAACTGAGAAGCCTGCGCAAGATGTGAAGGAGGTCAATGTACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

227

Amino Acids

25.46

Weight (kDa)

6.4

Isoelectric Point (pI)

46.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP20	PF00011	126 - 226	2.7e-27	Hsp20/alpha crystallin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	654
AccII	CGCG	1 cut(s)	563
AciI	CCGC	2 cut(s)	232, 406
AclWI	GGATC	1 cut(s)	267
AcsI	RAATTY	1 cut(s)	518
AfaI	GTAC	1 cut(s)	678
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	2 cut(s)	25, 293
AhlI	ACTAGT	1 cut(s)	554
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	2 cut(s)	258, 500
AlwI	GGATC	1 cut(s)	267
AlwNI	CAGNNNCTG	1 cut(s)	134
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	518
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	207
AsuC2I	CCSGG	3 cut(s)	316, 370, 420
AsuHPI	GGTGA	4 cut(s)	29, 149, 157, 345
AvaII	GGWCC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	64, 198, 605
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	3 cut(s)	316, 370, 420
BcoDI	GTCTC	2 cut(s)	258, 500
BcuI	ACTAGT	1 cut(s)	554
BfaI	CTAG	2 cut(s)	555, 636
BfmI	CTRYAG	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	75, 232
BlsI	GCNGC	2 cut(s)	76, 233
Bme1390I	CCNGG	3 cut(s)	316, 370, 420
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	230
BmrFI	CCNGG	3 cut(s)	316, 370, 420
BmsI	GCATC	3 cut(s)	192, 565, 608
BpmI	CTGGAG	1 cut(s)	247
BpuMI	CCSGG	3 cut(s)	316, 370, 420
BsaJI	CCNNGG	2 cut(s)	356, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	220, 250, 526, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	2 cut(s)	356, 429
BseGI	GGATG	2 cut(s)	442, 616
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	144, 633
BseNI	ACTGG	1 cut(s)	230
BseRI	GAGGAG	1 cut(s)	127
BseXI	GCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	563
BshFI	GGCC	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	486
BsiSI	CCGG	3 cut(s)	315, 369, 419
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	2 cut(s)	258, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp1407I	TGTACA	1 cut(s)	676
Bsp143I	GATC	2 cut(s)	175, 259
Bsp19I	CCATGG	1 cut(s)	356
BspACI	CCGC	2 cut(s)	232, 406
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	145, 634
BspFNI	CGCG	1 cut(s)	563
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	676
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	356, 429
BssMI	GATC	2 cut(s)	175, 259
BssT1I	CCWWGG	2 cut(s)	356, 429
Bst4CI	ACNGT	1 cut(s)	395
Bst6I	CTCTTC	2 cut(s)	489, 498
BstAUI	TGTACA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	123, 651
BstDEI	CTNAG	3 cut(s)	153, 179, 642
BstDSI	CCRYGG	1 cut(s)	356
BstF5I	GGATG	2 cut(s)	442, 616
BstFNI	CGCG	1 cut(s)	563
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	2 cut(s)	178, 262
BstMAI	GTCTC	2 cut(s)	258, 500
BstMBI	GATC	2 cut(s)	175, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 131
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	3 cut(s)	314, 368, 418
BstSFI	CTRYAG	1 cut(s)	126
BstUI	CGCG	1 cut(s)	563
BstV1I	GCAGC	1 cut(s)	61
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	356
BtsCI	GGATG	2 cut(s)	442, 616
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	2 cut(s)	123, 651
CaiI	CAGNNNCTG	1 cut(s)	134
CfoI	GCGC	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	677
CviAII	CATG	2 cut(s)	357, 415
CviJI	RGCY	7 cut(s)	5, 20, 194, 231, 288, 331, 649
CviKI_1	RGCY	7 cut(s)	5, 20, 194, 231, 288, 331, 649
CviQI	GTAC	1 cut(s)	677
DdeI	CTNAG	3 cut(s)	153, 179, 642
DpnI	GATC	2 cut(s)	177, 261
DpnII	GATC	2 cut(s)	175, 259
Eam1104I	CTCTTC	2 cut(s)	489, 498
EarI	CTCTTC	2 cut(s)	489, 498
Eco130I	CCWWGG	2 cut(s)	356, 429
Eco47I	GGWCC	1 cut(s)	207
EcoT14I	CCWWGG	2 cut(s)	356, 429
ErhI	CCWWGG	2 cut(s)	356, 429
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	2 cut(s)	360, 418
FaiI	YATR	6 cut(s)	247, 323, 350, 358, 416, 540
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	2 cut(s)	356, 414
Fnu4HI	GCNGC	2 cut(s)	75, 232
FokI	GGATG	2 cut(s)	449, 623
Fsp4HI	GCNGC	2 cut(s)	75, 232
FspBI	CTAG	2 cut(s)	555, 636
FspI	TGCGCA	1 cut(s)	654
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	2 cut(s)	75, 232
GsuI	CTGGAG	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	3 cut(s)	315, 369, 419
HgaI	GACGC	1 cut(s)	140
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	2 cut(s)	360, 418
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	315, 369, 419
HphI	GGTGA	4 cut(s)	29, 149, 157, 345
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	2 cut(s)	190, 468
Hpy188III	TCNNGA	2 cut(s)	152, 263
Hpy8I	GTNNAC	1 cut(s)	679
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	13
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 131
HpyF3I	CTNAG	3 cut(s)	153, 179, 642
HpySE526I	ACGT	1 cut(s)	13
Hsp92II	CATG	2 cut(s)	360, 418
HspAI	GCGC	1 cut(s)	653
Kzo9I	GATC	2 cut(s)	175, 259
LmnI	GCTCC	3 cut(s)	228, 249, 481
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	3 cut(s)	192, 565, 608
MaeI	CTAG	2 cut(s)	555, 636
MaeII	ACGT	1 cut(s)	13
MaeIII	GTNAC	4 cut(s)	145, 303, 395, 625
MalI	GATC	2 cut(s)	177, 261
MboI	GATC	2 cut(s)	175, 259
MboII	GAAGA	6 cut(s)	37, 51, 54, 454, 506, 515
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	2 cut(s)	401, 518
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	9 cut(s)	36, 105, 108, 184, 427, 490, 505, 600, 661
MspI	CCGG	3 cut(s)	315, 369, 419
MspR9I	CCNGG	3 cut(s)	316, 370, 420
MvnI	CGCG	1 cut(s)	563
MwoI	GCNNNNNNNGC	2 cut(s)	17, 131
NciI	CCSGG	3 cut(s)	316, 370, 420
NcoI	CCATGG	1 cut(s)	356
NdeII	GATC	2 cut(s)	175, 259
NlaIII	CATG	2 cut(s)	360, 418
NlaIV	GGNNCC	1 cut(s)	230
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	654
NspI	RCATGY	1 cut(s)	418
PkrI	GCNGC	2 cut(s)	76, 233
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	1 cut(s)	207
PstNI	CAGNNNCTG	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	1 cut(s)	678
RsaNI	GTAC	1 cut(s)	677
SatI	GCNGC	2 cut(s)	75, 232
Sau3AI	GATC	2 cut(s)	175, 259
Sau96I	GGNCC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	3 cut(s)	316, 370, 420
SduI	GDGCHC	1 cut(s)	486
SetI	ASST	6 cut(s)	16, 119, 147, 202, 345, 672
SfaNI	GCATC	3 cut(s)	192, 565, 608
SfcI	CTRYAG	1 cut(s)	126
SinI	GGWCC	1 cut(s)	207
SpeI	ACTAGT	1 cut(s)	554
Sse9I	AATT	2 cut(s)	401, 518
SsiI	CCGC	2 cut(s)	232, 406
SspMI	CTAG	2 cut(s)	555, 636
StyD4I	CCNGG	3 cut(s)	314, 368, 418
StyI	CCWWGG	2 cut(s)	356, 429
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	16
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	401, 518
TatI	WGTACW	1 cut(s)	676
TauI	GCSGC	1 cut(s)	234
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	2 cut(s)	474, 524
VpaK11BI	GGWCC	1 cut(s)	207
XapI	RAATTY	1 cut(s)	518
XceI	RCATGY	1 cut(s)	418
XspI	CTAG	2 cut(s)	555, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.