Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8314361.1

Orthogroup ID

OG0000141

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 418

Gene Structure 417 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8314361.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atggaaggaatcactcaactttcaacaggtaaacttatctctttgtctgagcaagagctagttgactgtgatgtgaatggtggagaccaaggttgtgagggtggcttgatcgacaatgcctttgagttcatcgatcaaaatcatggacttagtactgaagctaattacccctacaccggtgttgatggtacatgcaatgcccaaaaggaagccagccatgcagcctcgataactggtcacgaagatgtgccggcaaataatgaaagtgcccttcttaaggccgtcgctaatcaacccatttctgttgccattgatgctagtagttcggatttccaattctattcaagtggtgttttcacaggaacttgcagaacaagtggtttgccattgatgctaaaccatggtgttaccgcagta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

139

Amino Acids

14.46

Weight (kDa)

4.16

Isoelectric Point (pI)

20.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22160
fragaria_vesca	FvH4_1g23580 FvH4_1g25982 FvH4_2g17070 FvH4_3g40500 FvH4_6g27180 FvH4_6g27320 FvH4_6g33300 FvH4_6g33310 FvH4_7g09480 FvH4_7g13000 FvH4_7g13320 FvH4_7g13600
malus_domestica	MD00G1208000.v1.1 MD09G1238200.v1.1 MD09G1238600.v1.1 MD09G1238800.v1.1 MD09G1239100.v1.1 MD16G1226900.v1.1 MD16G1242700.v1.1 MD16G1244200.v1.1 MD16G1245500.v1.1 MD16G1245800.v1.1 MD17G1231600.v1.1 MD17G1231700.v1.1 MD17G1231800.v1.1 MD17G1232200.v1.1 MD17G1232300.v1.1 MD17G1232400.v1.1
prunus_persica	Prupe.1G072300_v2.0.a1 Prupe.1G072400_v2.0.a1 Prupe.3G106300_v2.0.a1 Prupe.3G106400_v2.0.a1 Prupe.3G119400_v2.0.a1 Prupe.3G120600_v2.0.a1 Prupe.3G121900_v2.0.a1 Prupe.3G122000_v2.0.a1 Prupe.3G122100_v2.0.a1 Prupe.3G122200_v2.0.a1 Prupe.3G122700_v2.0.a1 Prupe.5G055900_v2.0.a1 Prupe.5G056500_v2.0.a1
pyrus_communis	pycom09g15770 pycom09g15780 pycom09g15790 pycom16g20640 pycom17g18390
rosa_chinensis	RchiOBHm_Chr1g0352141 RchiOBHm_Chr1g0352581 RchiOBHm_Chr1g0352601 RchiOBHm_Chr1g0352621 RchiOBHm_Chr1g0352631 RchiOBHm_Chr2g0119131 RchiOBHm_Chr2g0128691 RchiOBHm_Chr2g0128701 RchiOBHm_Chr2g0129151 RchiOBHm_Chr2g0129221 RchiOBHm_Chr2g0129401 RchiOBHm_Chr2g0129421 RchiOBHm_Chr2g0129431 RchiOBHm_Chr2g0129471 RchiOBHm_Chr2g0129481 RchiOBHm_Chr2g0129491 RchiOBHm_Chr2g0143051 RchiOBHm_Chr2g0143121 RchiOBHm_Chr2g0143171 RchiOBHm_Chr3g0457341 RchiOBHm_Chr5g0049011 RchiOBHm_Chr6g0281281 RchiOBHm_Chr6g0281311
rosa_laevigata	RLG00000012975 RLG00000012976 RLG00000012979 RLG00000018447 RLG00000019018 RLG00000019061 RLG00000019066 RLG00000019078 RLG00000019079 RLG00000019080 RLG00000019083 RLG00000019085 RLG00000020009 RLG00000020010 RLG00000025234 RLG00000028326 RLG00000028327 RLG00000028328 RLG00000028329 RLG00000028357 RLG00000031784
rosa_multiflora	Rmu_co8169188.1_g000001 Rmu_co8261007.1_g000001 Rmu_co8314361.1_g000001 Rmu_sc0000109.1_g000014 Rmu_sc0000638.1_g000020 Rmu_sc0000847.1_g000020 Rmu_sc0000847.1_g000028 Rmu_sc0000847.1_g000037 Rmu_sc0000847.1_g000046 Rmu_sc0000911.1_g000034 Rmu_sc0000999.1_g000021 Rmu_sc0001171.1_g000013 Rmu_sc0001171.1_g000018 Rmu_sc0001171.1_g000019 Rmu_sc0001653.1_g000004 Rmu_sc0002277.1_g000005 Rmu_sc0003479.1_g000001 Rmu_sc0005118.1_g000006 Rmu_sc0005118.1_g000008 Rmu_sc0005227.1_g000012 Rmu_sc0005442.1_g000010 Rmu_sc0005514.1_g000005 Rmu_sc0005996.1_g000014 Rmu_sc0008800.1_g000002 Rmu_sc0008800.1_g000010 Rmu_sc0008800.1_g000014
rosa_roxburghii	Rroxscaffold_1G00065560 Rroxscaffold_2G00102080 Rroxscaffold_2G00102090 Rroxscaffold_2G00102110 Rroxscaffold_2G00114560 Rroxscaffold_2G00114570 Rroxscaffold_2G00114610 Rroxscaffold_2G00114620 Rroxscaffold_2G00114640 Rroxscaffold_2G00114740 Rroxscaffold_2G00114790 Rroxscaffold_2G00115860 Rroxscaffold_2G00124490 Rroxscaffold_4G00302260 Rroxscaffold_4G00302530 Rroxscaffold_4G00302550 Rroxscaffold_4G00302560 Rroxscaffold_4G00302620 Rroxscaffold_6G00421980 Rroxscaffold_7G00187140 Rroxscaffold_7G00187170
rosa_rugosa	Rorug01G0225000 Rorug01G0230200 Rorug02G0220500 Rorug02G0280000 Rorug02G0285200 Rorug02G0285400 Rorug02G0286300 Rorug02G0286300 Rorug02G0286400 Rorug02G0286900 Rorug02G0377800 Rorug02G0377900 Rorug02G0378000 Rorug02G0378000 Rorug02G0378800 Rorug03G0019800 Rorug04G0452700 Rorug06G0140300 Rorug06G0140500 Rorug06G0140600
rosa_samantha	Rh1CG223600 Rh1CG227200 Rh1CG227500 Rh1CG227600 Rh2BG341200 Rh2BG345300 Rh2BG440200 Rh2DG284500 Rh2DG357900 Rh2DG362100 Rh2DG362600 Rh2DG364500 Rh2DG364600 Rh2DG364700 Rh2DG364800 Rh2DG364900 Rh2DG365000 Rh2DG365400 Rh2DG450400 Rh3AG080000 Rh3BG081900 Rh5AG322100 Rh5BG079800 Rh6AG252100 Rh6BG255600
rosa_wichuraiana	Rw1G020770 Rw1G021290 Rw2G022120 Rw2G026940 Rw2G027360 Rw2G027370 Rw2G027950 Rw2G027960 Rw2G027970 Rw2G035220 Rw3G006890 Rw6G021900 Rw6G021930 Rw6G021950 Rw6G021970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	411
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	154, 190
AfiI	CCNNNNNNNGG	2 cut(s)	176, 277
AflII	CTTAAG	1 cut(s)	275
AgeI	ACCGGT	1 cut(s)	176
AgsI	TTSAA	2 cut(s)	24, 345
AluBI	AGCT	2 cut(s)	58, 161
AluI	AGCT	2 cut(s)	58, 161
Alw26I	GTCTC	1 cut(s)	78
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	221
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
AsiGI	ACCGGT	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	179
BceAI	ACGGC	1 cut(s)	266
BcoDI	GTCTC	1 cut(s)	78
BfaI	CTAG	2 cut(s)	59, 318
BfrI	CTTAAG	1 cut(s)	275
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmcAI	AGTACT	1 cut(s)	154
BmsI	GCATC	2 cut(s)	304, 381
Bsa29I	ATCGAT	1 cut(s)	132
BsaBI	GATNNNNATC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	88, 400
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 277
Bse118I	RCCGGY	2 cut(s)	176, 250
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	88, 400
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	2 cut(s)	176, 277
BseMI	GCAATG	1 cut(s)	202
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	238
BseSI	GKGCMC	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	233
BshFI	GGCC	1 cut(s)	281
BshTI	ACCGGT	1 cut(s)	176
BshVI	ATCGAT	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	177, 251
BslI	CCNNNNNNNGG	2 cut(s)	176, 277
BsmAI	GTCTC	1 cut(s)	78
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	78
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	108, 133
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	132
BspTI	CTTAAG	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	78
BsrDI	GCAATG	1 cut(s)	202
BsrFI	RCCGGY	2 cut(s)	176, 250
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	2 cut(s)	176, 250
BssECI	CCNNGG	2 cut(s)	88, 400
BssMI	GATC	2 cut(s)	108, 133
BssT1I	CCWWGG	2 cut(s)	88, 400
Bst4CI	ACNGT	1 cut(s)	68
BstAFI	CTTAAG	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	214, 252
BstDEI	CTNAG	2 cut(s)	48, 149
BstDSI	CCRYGG	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstKTI	GATC	2 cut(s)	111, 136
BstMAI	GTCTC	1 cut(s)	78
BstMBI	GATC	2 cut(s)	108, 133
BstMWI	GCNNNNNNNGC	3 cut(s)	218, 314, 391
BstNSI	RCATGY	1 cut(s)	195
BstSLI	GKGCMC	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	233
Bsu15I	ATCGAT	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	281
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	214, 252
Cfr10I	RCCGGY	2 cut(s)	176, 250
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	153, 189
CspAI	ACCGGT	1 cut(s)	176
CviAII	CATG	4 cut(s)	143, 192, 218, 401
CviJI	RGCY	7 cut(s)	58, 105, 161, 212, 216, 224, 281
CviKI_1	RGCY	7 cut(s)	58, 105, 161, 212, 216, 224, 281
CviQI	GTAC	2 cut(s)	153, 189
DdeI	CTNAG	2 cut(s)	48, 149
DpnI	GATC	2 cut(s)	110, 135
DpnII	GATC	2 cut(s)	108, 133
Eco130I	CCWWGG	2 cut(s)	88, 400
Eco31I	GGTCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoT14I	CCWWGG	2 cut(s)	88, 400
ErhI	CCWWGG	2 cut(s)	88, 400
FaeI	CATG	4 cut(s)	146, 195, 221, 404
FaiI	YATR	4 cut(s)	144, 193, 219, 402
FatI	CATG	4 cut(s)	142, 191, 217, 400
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	59, 318
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	2 cut(s)	177, 251
Hin1II	CATG	4 cut(s)	146, 195, 221, 404
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	177, 251
Hpy166II	GTNNAC	2 cut(s)	32, 64
Hpy188I	TCNGA	2 cut(s)	49, 328
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	32, 64
Hpy99I	CGWCG	1 cut(s)	287
HpyAV	CCTTC	1 cut(s)	281
HpyCH4III	ACNGT	1 cut(s)	68
HpyCH4V	TGCA	3 cut(s)	195, 221, 369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	218, 314, 391
HpyF3I	CTNAG	2 cut(s)	48, 149
Hsp92II	CATG	4 cut(s)	146, 195, 221, 404
KroI	GCCGGC	1 cut(s)	250
KroNI	GCCGGC	1 cut(s)	252
Kzo9I	GATC	2 cut(s)	108, 133
LpnPI	CCDG	6 cut(s)	12, 190, 219, 226, 264, 345
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	304, 381
MaeI	CTAG	2 cut(s)	59, 318
MaeIII	GTNAC	2 cut(s)	236, 406
MalI	GATC	2 cut(s)	110, 135
MboI	GATC	2 cut(s)	108, 133
MboII	GAAGA	1 cut(s)	254
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	2 cut(s)	163, 335
MnlI	CCTC	2 cut(s)	91, 235
MroNI	GCCGGC	1 cut(s)	250
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	243
MspCI	CTTAAG	1 cut(s)	275
MspI	CCGG	2 cut(s)	177, 251
MwoI	GCNNNNNNNGC	3 cut(s)	218, 314, 391
NaeI	GCCGGC	1 cut(s)	252
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	2 cut(s)	108, 133
NgoMIV	GCCGGC	1 cut(s)	250
NlaIII	CATG	4 cut(s)	146, 195, 221, 404
NmuCI	GTSAC	1 cut(s)	236
NspI	RCATGY	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	9
PinAI	ACCGGT	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	154, 190
RsaNI	GTAC	2 cut(s)	153, 189
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	2 cut(s)	108, 133
ScaI	AGTACT	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	271
SetI	ASST	4 cut(s)	31, 60, 94, 163
SfaNI	GCATC	2 cut(s)	304, 381
SgrAI	CRCCGGYG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	163, 335
SsiI	CCGC	1 cut(s)	411
SspMI	CTAG	2 cut(s)	59, 318
StyI	CCWWGG	2 cut(s)	88, 400
TaaI	ACNGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	111, 132, 227
TasI	AATT	2 cut(s)	163, 335
TatI	WGTACW	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	221
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	118, 276
Vha464I	CTTAAG	1 cut(s)	275
XagI	CCTNNNNNAGG	1 cut(s)	275
XceI	RCATGY	1 cut(s)	195
XspI	CTAG	2 cut(s)	59, 318
ZrmI	AGTACT	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.